Wall clock time and date at job start Tue Mar 31 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47207 * 2 1 4 4 N 1.30261 * 125.61597 * 90.00402 * 3 2 1 5 5 C 1.34481 * 108.69787 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.16173 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46790 * 275.02300 * 6 5 4 8 8 C 1.46903 * 111.00131 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47302 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.47135 * 59.99463 * 9 8 7 11 11 O 1.42897 * 109.46674 * 299.99470 * 9 8 7 12 12 C 1.53004 * 109.46799 * 179.97438 * 9 8 7 13 13 N 1.46898 * 109.46619 * 184.99872 * 12 9 8 14 14 C 1.46901 * 111.00443 * 66.04574 * 13 12 9 15 15 C 1.46906 * 110.99820 * 189.99887 * 13 12 9 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00248 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99357 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46811 * 90.00524 * 20 18 16 22 22 H 1.48502 * 109.46643 * 209.99901 * 20 18 16 23 23 H 1.48499 * 109.47300 * 329.99977 * 20 18 16 24 24 C 1.34322 * 107.67009 * 0.25864 * 5 4 3 25 25 O 1.33967 * 125.62108 * 269.95835 * 3 2 1 26 26 H 1.08998 * 109.46811 * 299.99703 * 1 2 3 27 27 H 1.08996 * 109.47357 * 59.99268 * 1 2 3 28 28 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46811 * 240.00297 * 2 1 3 30 30 H 1.08993 * 109.46935 * 120.00446 * 2 1 3 31 31 H 1.09000 * 109.46904 * 155.02441 * 6 5 4 32 32 H 1.08998 * 109.47520 * 35.01998 * 6 5 4 33 33 H 1.00904 * 111.00509 * 56.04401 * 7 6 5 34 34 H 1.08996 * 109.47237 * 59.99345 * 8 7 6 35 35 H 1.09009 * 109.46499 * 299.99967 * 8 7 6 36 36 H 0.96701 * 114.00549 * 300.00026 * 11 9 8 37 37 H 1.08994 * 109.47270 * 64.99737 * 12 9 8 38 38 H 1.08999 * 109.47017 * 304.99614 * 12 9 8 39 39 H 1.09002 * 109.47401 * 183.95136 * 14 13 12 40 40 H 1.09001 * 109.46874 * 63.95149 * 14 13 12 41 41 H 1.09004 * 109.46970 * 303.95282 * 14 13 12 42 42 H 1.08997 * 109.46995 * 289.99871 * 15 13 12 43 43 H 1.09001 * 109.46848 * 49.99877 * 15 13 12 44 44 H 0.96999 * 119.99895 * 180.02562 * 19 18 16 45 45 H 1.08003 * 126.44454 * 179.73383 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2853 2.1359 1.0589 5 6 2.7147 3.3488 0.6676 6 6 3.1171 4.4844 1.5729 7 7 1.9230 5.2452 1.9642 8 6 2.2776 6.3633 2.8486 9 6 1.0109 7.1299 3.2345 10 1 0.3247 6.4603 3.7527 11 8 0.3829 7.6363 2.0550 12 6 1.3803 8.2941 4.1561 13 7 0.1552 8.9570 4.6224 14 6 -0.6310 8.0646 5.4845 15 6 0.4678 10.2153 5.3131 16 6 -0.8053 10.9835 5.5583 17 1 -1.7521 10.5774 5.2339 18 6 -0.7616 12.2048 6.1967 19 7 -1.8726 12.8749 6.4112 20 14 0.8759 12.9068 6.7584 21 1 1.4589 13.7336 5.6714 22 1 0.6660 13.7495 7.9630 23 1 1.8043 11.7954 7.0874 24 6 2.7154 3.3672 -0.6755 25 8 2.2932 2.1561 -1.0890 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8098 5.1409 1.0462 32 1 3.6014 4.0848 2.4638 33 1 1.2373 4.6447 2.3972 34 1 2.9643 7.0327 2.3306 35 1 2.7564 5.9770 3.7485 36 1 0.9372 8.2407 1.5427 37 1 1.9950 9.0092 3.6097 38 1 1.9377 7.9162 5.0132 39 1 -1.5655 8.5543 5.7586 40 1 -0.0624 7.8365 6.3861 41 1 -0.8486 7.1406 4.9487 42 1 0.9495 9.9967 6.2661 43 1 1.1389 10.8120 4.6951 44 1 -1.8418 13.7343 6.8600 45 1 3.0029 4.1959 -1.3056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819358006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:58 Heat of formation + Delta-G solvation = -22.551817 kcal Electronic energy + Delta-G solvation = -23404.641042 eV Core-core repulsion = 19845.032382 eV Total energy + Delta-G solvation = -3559.608660 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.60604 -38.39495 -36.51686 -35.45875 -34.87871 -33.94880 -32.44974 -30.69340 -29.37231 -27.76671 -26.67823 -25.05586 -24.59314 -23.04793 -21.69735 -21.37773 -20.91814 -20.10210 -17.49479 -16.96306 -16.88542 -16.51378 -15.84672 -15.46426 -15.21240 -15.03235 -14.77708 -14.62154 -14.24541 -14.19623 -13.79497 -13.43487 -13.11762 -12.84325 -12.57022 -12.46927 -12.27213 -12.12290 -11.96885 -11.62978 -11.60094 -11.35877 -11.21436 -10.98197 -10.83346 -10.77411 -10.51948 -10.27057 -10.00790 -9.53175 -9.22414 -9.07489 -8.57535 -8.55690 -7.31865 -6.03339 -4.00431 1.18423 2.31428 2.45912 3.28134 3.35465 3.36794 3.58794 4.00505 4.42490 4.42938 4.52524 4.62547 4.68729 4.73163 4.81548 4.92412 5.07224 5.17517 5.22923 5.27017 5.30696 5.33297 5.43098 5.47886 5.55304 5.58119 5.61373 5.65609 5.72185 5.93889 5.99428 6.10058 6.22834 6.32948 6.69112 6.73899 6.86052 6.99842 7.13703 7.47057 7.59595 7.90883 8.00924 8.14667 8.68047 9.06510 9.58094 11.09858 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034311 B = 0.002211 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.871960 B =12658.749277 C =13013.485945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.025 4.025 3 C 0.190 3.810 4 N -0.478 5.478 5 C -0.012 4.012 6 C 0.141 3.859 7 N -0.674 5.674 8 C 0.026 3.974 9 C 0.117 3.883 10 H 0.094 0.906 11 O -0.534 6.534 12 C 0.022 3.978 13 N -0.520 5.520 14 C 0.036 3.964 15 C 0.162 3.838 16 C -0.507 4.507 17 H 0.082 0.918 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C -0.055 4.055 25 O -0.204 6.204 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.347 0.653 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.368 0.632 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.080 0.920 40 H 0.010 0.990 41 H 0.049 0.951 42 H -0.014 1.014 43 H 0.022 0.978 44 H 0.263 0.737 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.959 -24.615 -13.573 30.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.063 4.063 3 C -0.018 4.018 4 N -0.208 5.208 5 C -0.131 4.131 6 C 0.011 3.989 7 N -0.305 5.305 8 C -0.104 4.104 9 C 0.056 3.944 10 H 0.112 0.888 11 O -0.337 6.337 12 C -0.108 4.108 13 N -0.244 5.244 14 C -0.113 4.113 15 C 0.036 3.964 16 C -0.545 4.545 17 H 0.100 0.900 18 C -0.135 4.135 19 N -0.539 5.539 20 Si 0.703 3.297 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.126 4.126 25 O -0.090 6.090 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.165 0.835 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.214 0.786 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.028 0.972 41 H 0.068 0.932 42 H 0.004 0.996 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.033 -24.535 -13.669 30.175 hybrid contribution 2.236 0.631 1.093 2.568 sum 13.270 -23.904 -12.576 30.094 Atomic orbital electron populations 1.21790 0.92929 1.02990 1.03217 1.20050 0.96997 0.84270 1.05018 1.26300 0.99876 0.96913 0.78685 1.70318 1.16411 1.03642 1.30406 1.21584 1.04728 0.93917 0.92915 1.20135 0.92695 0.89911 0.96154 1.60400 1.11426 1.12325 1.46398 1.22748 0.98791 0.93822 0.95010 1.21866 0.92559 0.93526 0.86421 0.88813 1.86619 1.44316 1.65850 1.36954 1.22776 0.93577 0.96503 0.97936 1.61853 1.17004 1.04887 1.40641 1.22289 0.99527 0.95816 0.93646 1.20202 0.97695 0.87131 0.91398 1.21042 0.93549 1.03022 1.36929 0.90045 1.24913 0.96142 0.96737 0.95675 1.69894 1.26543 1.14521 1.42973 0.86862 0.84883 0.79360 0.78614 1.20154 1.21210 1.19425 1.24803 1.04588 0.87045 0.96185 1.84445 1.63976 1.22798 1.37761 0.91592 0.92066 0.90882 0.89002 0.87749 0.89398 0.93597 0.83474 0.90489 0.94442 0.78605 0.91063 0.95418 0.90172 0.97185 0.93222 0.99590 0.95964 0.92689 0.76727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.19 1.84 7.60 -12.95 -0.10 1.74 16 4 N -0.48 -5.54 11.29 -7.36 -0.08 -5.62 16 5 C -0.01 -0.13 6.62 -82.81 -0.55 -0.67 16 6 C 0.14 1.34 6.23 -4.97 -0.03 1.31 16 7 N -0.67 -7.45 6.36 -115.05 -0.73 -8.18 16 8 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 9 C 0.12 1.63 3.13 -26.73 -0.08 1.55 16 10 H 0.09 1.39 6.26 -51.93 -0.33 1.07 16 11 O -0.53 -8.39 13.15 -35.23 -0.46 -8.85 16 12 C 0.02 0.36 4.60 -3.82 -0.02 0.34 16 13 N -0.52 -11.05 4.70 -244.37 -1.15 -12.20 16 14 C 0.04 0.70 9.17 60.07 0.55 1.25 16 15 C 0.16 3.98 3.79 -4.97 -0.02 3.96 16 16 C -0.51 -14.66 9.07 -34.44 -0.31 -14.97 16 17 H 0.08 2.58 7.35 -52.48 -0.39 2.19 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 20 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 24 C -0.05 -0.50 12.08 29.35 0.35 -0.15 16 25 O -0.20 -2.03 10.78 5.34 0.06 -1.98 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.35 4.16 8.72 -39.29 -0.34 3.82 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.37 4.70 9.05 45.56 0.41 5.11 16 37 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 38 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 39 H 0.08 1.77 6.86 -51.93 -0.36 1.41 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.05 0.85 6.21 -51.93 -0.32 0.53 16 42 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 43 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.22 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -34.48 370.83 -7.54 -42.02 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.73 Total: 3.66 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.14 Total: -4.30 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -1.19 Total: -53.11 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.41 Total: -10.83 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.48 -7.54 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819358006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.465 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds