Wall clock time and date at job start Tue Mar 31 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47207 * 2 1 4 4 N 1.30261 * 125.61597 * 90.00402 * 3 2 1 5 5 C 1.34481 * 108.69787 * 179.97438 * 4 3 2 6 6 C 1.50702 * 126.16173 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46790 * 275.02300 * 6 5 4 8 8 C 1.46903 * 111.00131 * 180.02562 * 7 6 5 9 9 C 1.52998 * 109.47302 * 180.02562 * 8 7 6 10 10 H 1.08992 * 109.47135 * 59.99463 * 9 8 7 11 11 O 1.42897 * 109.46674 * 299.99470 * 9 8 7 12 12 C 1.53004 * 109.46799 * 179.97438 * 9 8 7 13 13 N 1.46898 * 109.46619 * 184.99872 * 12 9 8 14 14 C 1.46901 * 111.00443 * 66.04574 * 13 12 9 15 15 C 1.46906 * 110.99820 * 189.99887 * 13 12 9 16 16 C 1.50696 * 109.47351 * 169.99890 * 15 13 12 17 17 H 1.08007 * 119.99780 * 0.02562 * 16 15 13 18 18 C 1.37878 * 120.00506 * 180.02562 * 16 15 13 19 19 N 1.31510 * 120.00248 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99357 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46811 * 90.00524 * 20 18 16 22 22 H 1.48502 * 109.46643 * 209.99901 * 20 18 16 23 23 H 1.48499 * 109.47300 * 329.99977 * 20 18 16 24 24 C 1.34322 * 107.67009 * 0.25864 * 5 4 3 25 25 O 1.33967 * 125.62108 * 269.95835 * 3 2 1 26 26 H 1.08998 * 109.46811 * 299.99703 * 1 2 3 27 27 H 1.08996 * 109.47357 * 59.99268 * 1 2 3 28 28 H 1.09000 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46811 * 240.00297 * 2 1 3 30 30 H 1.08993 * 109.46935 * 120.00446 * 2 1 3 31 31 H 1.09000 * 109.46904 * 155.02441 * 6 5 4 32 32 H 1.08998 * 109.47520 * 35.01998 * 6 5 4 33 33 H 1.00904 * 111.00509 * 56.04401 * 7 6 5 34 34 H 1.08996 * 109.47237 * 59.99345 * 8 7 6 35 35 H 1.09009 * 109.46499 * 299.99967 * 8 7 6 36 36 H 0.96701 * 114.00549 * 300.00026 * 11 9 8 37 37 H 1.08994 * 109.47270 * 64.99737 * 12 9 8 38 38 H 1.08999 * 109.47017 * 304.99614 * 12 9 8 39 39 H 1.09002 * 109.47401 * 183.95136 * 14 13 12 40 40 H 1.09001 * 109.46874 * 63.95149 * 14 13 12 41 41 H 1.09004 * 109.46970 * 303.95282 * 14 13 12 42 42 H 1.08997 * 109.46995 * 289.99871 * 15 13 12 43 43 H 1.09001 * 109.46848 * 49.99877 * 15 13 12 44 44 H 0.96999 * 119.99895 * 180.02562 * 19 18 16 45 45 H 1.08003 * 126.44454 * 179.73383 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2853 2.1359 1.0589 5 6 2.7147 3.3488 0.6676 6 6 3.1171 4.4844 1.5729 7 7 1.9230 5.2452 1.9642 8 6 2.2776 6.3633 2.8486 9 6 1.0109 7.1299 3.2345 10 1 0.3247 6.4603 3.7527 11 8 0.3829 7.6363 2.0550 12 6 1.3803 8.2941 4.1561 13 7 0.1552 8.9570 4.6224 14 6 -0.6310 8.0646 5.4845 15 6 0.4678 10.2153 5.3131 16 6 -0.8053 10.9835 5.5583 17 1 -1.7521 10.5774 5.2339 18 6 -0.7616 12.2048 6.1967 19 7 -1.8726 12.8749 6.4112 20 14 0.8759 12.9068 6.7584 21 1 1.4589 13.7336 5.6714 22 1 0.6660 13.7495 7.9630 23 1 1.8043 11.7954 7.0874 24 6 2.7154 3.3672 -0.6755 25 8 2.2932 2.1561 -1.0890 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8098 5.1409 1.0462 32 1 3.6014 4.0848 2.4638 33 1 1.2373 4.6447 2.3972 34 1 2.9643 7.0327 2.3306 35 1 2.7564 5.9770 3.7485 36 1 0.9372 8.2407 1.5427 37 1 1.9950 9.0092 3.6097 38 1 1.9377 7.9162 5.0132 39 1 -1.5655 8.5543 5.7586 40 1 -0.0624 7.8365 6.3861 41 1 -0.8486 7.1406 4.9487 42 1 0.9495 9.9967 6.2661 43 1 1.1389 10.8120 4.6951 44 1 -1.8418 13.7343 6.8600 45 1 3.0029 4.1959 -1.3056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819358006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:57 Heat of formation + Delta-G solvation = -53.778477 kcal Electronic energy + Delta-G solvation = -23405.995131 eV Core-core repulsion = 19845.032382 eV Total energy + Delta-G solvation = -3560.962749 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.30842 -39.61465 -37.68377 -36.63635 -35.56212 -34.62852 -34.59746 -31.71734 -30.52036 -29.42081 -27.85102 -26.31003 -25.21446 -24.34391 -22.60419 -22.36685 -21.85490 -21.59875 -19.02814 -18.20181 -17.64914 -17.51995 -17.02103 -16.75259 -16.12629 -16.04542 -15.97970 -15.67152 -15.57812 -15.24063 -14.91191 -14.58734 -14.45934 -14.10384 -13.59653 -13.53206 -13.43698 -13.15218 -13.01462 -12.73225 -12.58651 -12.51797 -12.40822 -12.31589 -12.14451 -12.03500 -11.91114 -11.61894 -11.58191 -11.49147 -10.78369 -10.69598 -9.78661 -9.38813 -8.96511 -8.27834 -6.31709 0.49861 1.34473 1.36662 1.47095 1.57784 1.84514 2.34518 2.89829 3.04487 3.07552 3.44928 3.70846 3.80100 3.93460 3.96698 4.12538 4.20409 4.25061 4.31153 4.42218 4.43213 4.48777 4.58474 4.63140 4.64062 4.68584 4.77110 4.83922 4.88270 4.93087 4.97065 5.01251 5.08403 5.11724 5.23443 5.23931 5.36583 5.52783 5.92639 6.00042 6.24253 6.34637 6.66884 6.74947 6.76345 7.08230 7.31690 8.89042 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034311 B = 0.002211 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.871960 B =12658.749277 C =13013.485945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.025 4.025 3 C 0.184 3.816 4 N -0.510 5.510 5 C -0.036 4.036 6 C 0.146 3.854 7 N -0.680 5.680 8 C 0.039 3.961 9 C 0.125 3.875 10 H 0.082 0.918 11 O -0.557 6.557 12 C 0.023 3.977 13 N -0.542 5.542 14 C 0.041 3.959 15 C 0.172 3.828 16 C -0.518 4.518 17 H 0.033 0.967 18 C 0.003 3.997 19 N -0.949 5.949 20 Si 0.953 3.047 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.250 1.250 24 C -0.053 4.053 25 O -0.212 6.212 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.042 0.958 33 H 0.338 0.662 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.380 0.620 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.020 0.980 41 H 0.074 0.926 42 H -0.013 1.013 43 H 0.031 0.969 44 H 0.267 0.733 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.828 -25.580 -14.340 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.024 4.024 4 N -0.240 5.240 5 C -0.155 4.155 6 C 0.017 3.983 7 N -0.311 5.311 8 C -0.091 4.091 9 C 0.065 3.935 10 H 0.100 0.900 11 O -0.362 6.362 12 C -0.106 4.106 13 N -0.266 5.266 14 C -0.107 4.107 15 C 0.045 3.955 16 C -0.556 4.556 17 H 0.052 0.948 18 C -0.194 4.194 19 N -0.590 5.590 20 Si 0.776 3.224 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.174 1.174 24 C -0.124 4.124 25 O -0.098 6.098 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.156 0.844 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.092 0.908 42 H 0.005 0.995 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 13.920 -25.521 -14.453 32.466 hybrid contribution 1.235 0.852 1.267 1.963 sum 15.155 -24.670 -13.187 31.814 Atomic orbital electron populations 1.21767 0.92744 1.04097 1.01928 1.20279 0.97000 0.82470 1.06544 1.27067 0.99070 0.97945 0.78281 1.70305 1.17645 1.04548 1.31545 1.21851 1.05766 0.94100 0.93794 1.20162 0.92179 0.89864 0.96090 1.60409 1.12018 1.12442 1.46265 1.22575 0.97117 0.93708 0.95700 1.21762 0.93689 0.92604 0.85459 0.89975 1.86587 1.45650 1.66406 1.37567 1.22887 0.91673 0.97277 0.98794 1.61726 1.19745 1.04698 1.40388 1.22198 0.97993 0.96115 0.94421 1.19959 0.95210 0.88463 0.91866 1.21283 0.93782 1.03763 1.36763 0.94829 1.25928 1.00661 0.97104 0.95690 1.70063 1.29492 1.15235 1.44236 0.85641 0.79501 0.78955 0.78353 1.18750 1.20820 1.17408 1.25389 1.03449 0.87330 0.96248 1.84461 1.64101 1.23225 1.38043 0.93461 0.92696 0.88576 0.86731 0.86904 0.87358 0.93968 0.84448 0.88785 0.93490 0.77231 0.89928 0.94016 0.93722 0.96174 0.90752 0.99493 0.95084 0.92438 0.73860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.90 71.98 0.71 -0.76 16 2 C -0.03 -0.26 6.56 29.85 0.20 -0.06 16 3 C 0.18 3.42 7.60 88.34 0.67 4.09 16 4 N -0.51 -11.57 11.29 -291.98 -3.30 -14.87 16 5 C -0.04 -0.73 6.62 41.26 0.27 -0.45 16 6 C 0.15 2.52 6.23 85.56 0.53 3.05 16 7 N -0.68 -13.82 6.36 -517.92 -3.29 -17.11 16 8 C 0.04 0.74 5.35 86.30 0.46 1.20 16 9 C 0.13 3.26 3.13 30.60 0.10 3.35 16 10 H 0.08 2.33 6.26 -2.39 -0.01 2.31 16 11 O -0.56 -16.71 13.15 -148.98 -1.96 -18.67 16 12 C 0.02 0.68 4.60 86.30 0.40 1.08 16 13 N -0.54 -22.63 4.70 -927.04 -4.36 -26.99 16 14 C 0.04 1.63 9.17 127.69 1.17 2.80 16 15 C 0.17 8.31 3.79 85.55 0.32 8.63 16 16 C -0.52 -30.67 9.07 25.60 0.23 -30.43 16 17 H 0.03 2.25 7.35 -2.91 -0.02 2.22 16 18 C 0.00 0.18 5.47 84.66 0.46 0.65 16 19 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 20 Si 0.95 44.19 27.47 68.60 1.88 46.07 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 24 C -0.05 -0.90 12.08 66.92 0.81 -0.09 16 25 O -0.21 -3.99 10.78 -3.80 -0.04 -4.03 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.34 7.82 8.72 -89.69 -0.78 7.04 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.38 9.02 9.05 -74.06 -0.67 8.35 16 37 H 0.08 2.32 7.93 -2.39 -0.02 2.30 16 38 H 0.04 1.18 8.12 -2.39 -0.02 1.16 16 39 H 0.04 2.05 6.86 -2.39 -0.02 2.04 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 2.53 6.21 -2.38 -0.01 2.52 16 42 H -0.01 -0.60 7.18 -2.39 -0.02 -0.62 16 43 H 0.03 1.45 7.36 -2.39 -0.02 1.43 16 44 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 45 H 0.25 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -76.51 370.83 -4.94 -81.45 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.52 Total: 21.18 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 6.34 Total: -6.94 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -10.65 Total: -119.06 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -2.00 Total: -22.70 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -76.51 -4.94 -81.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819358006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.674 kcal (2) G-P(sol) polarization free energy of solvation -76.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds