Wall clock time and date at job start Tue Mar 31 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27641 * 125.76533 * 2 1 4 4 O 1.41440 * 113.18215 * 179.72632 * 3 2 1 5 5 C 1.44243 * 107.47941 * 17.31330 * 4 3 2 6 6 H 1.09006 * 111.01252 * 93.02361 * 5 4 3 7 7 C 1.50698 * 111.01428 * 216.85364 * 5 4 3 8 8 O 1.21281 * 120.00219 * 356.57791 * 7 5 4 9 9 N 1.34781 * 120.00346 * 176.57593 * 7 5 4 10 10 C 1.46496 * 119.99556 * 5.21645 * 9 7 5 11 11 C 1.50699 * 109.47458 * 53.70830 * 10 9 7 12 12 H 1.07997 * 119.99844 * 244.26160 * 11 10 9 13 13 C 1.37870 * 119.99959 * 63.98565 * 11 10 9 14 14 N 1.31516 * 120.00270 * 1.19913 * 13 11 10 15 15 Si 1.86804 * 120.00061 * 181.19434 * 13 11 10 16 16 H 1.48506 * 109.46710 * 59.99915 * 15 13 11 17 17 H 1.48494 * 109.47248 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47189 * 300.00216 * 15 13 11 19 19 C 1.46502 * 119.99880 * 185.21008 * 9 7 5 20 20 C 1.52998 * 109.47262 * 276.22684 * 19 9 7 21 21 C 1.52995 * 109.46894 * 172.59062 * 20 19 9 22 22 N 1.46900 * 109.47198 * 180.02562 * 21 20 19 23 23 C 1.46905 * 111.00117 * 170.00021 * 22 21 20 24 24 C 1.46902 * 110.99900 * 293.95565 * 22 21 20 25 25 C 1.51682 * 125.76572 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46970 * 269.97595 * 1 2 3 27 27 H 1.09002 * 109.46971 * 29.97876 * 1 2 3 28 28 H 1.09004 * 109.46661 * 149.97725 * 1 2 3 29 29 H 1.09000 * 109.47154 * 293.69974 * 10 9 7 30 30 H 1.09005 * 109.46950 * 173.70622 * 10 9 7 31 31 H 0.97002 * 120.00082 * 184.94417 * 14 13 11 32 32 H 1.08995 * 109.46751 * 36.23770 * 19 9 7 33 33 H 1.09000 * 109.46456 * 156.22823 * 19 9 7 34 34 H 1.08999 * 109.47463 * 292.59496 * 20 19 9 35 35 H 1.09003 * 109.46813 * 52.59888 * 20 19 9 36 36 H 1.08999 * 109.47420 * 300.00460 * 21 20 19 37 37 H 1.09004 * 109.47177 * 60.00514 * 21 20 19 38 38 H 1.09005 * 109.46743 * 59.99940 * 23 22 21 39 39 H 1.09003 * 109.47028 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47279 * 299.99983 * 23 22 21 41 41 H 1.08996 * 109.47124 * 60.00054 * 24 22 21 42 42 H 1.09001 * 109.46868 * 179.97438 * 24 22 21 43 43 H 1.08997 * 109.47196 * 299.99546 * 24 22 21 44 44 H 1.08997 * 110.80825 * 46.45803 * 25 2 1 45 45 H 1.08995 * 110.81238 * 282.94941 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6335 0.7276 0.0062 5 6 3.7718 -0.6499 -0.3989 6 1 3.9322 -0.7268 -1.4743 7 6 4.8835 -1.3274 0.3601 8 8 5.5612 -0.6913 1.1393 9 7 5.1249 -2.6401 0.1730 10 6 4.3839 -3.3825 -0.8497 11 6 4.5165 -2.6793 -2.1759 12 1 3.6438 -2.2600 -2.6544 13 6 5.7527 -2.5662 -2.7757 14 7 6.8126 -3.0925 -2.2020 15 14 5.9223 -1.6654 -4.4034 16 1 5.4727 -0.2594 -4.2402 17 1 7.3435 -1.6833 -4.8333 18 1 5.0854 -2.3366 -5.4302 19 6 6.1282 -3.3245 0.9923 20 6 7.5163 -3.1057 0.3871 21 6 8.5799 -3.6603 1.3368 22 7 9.9127 -3.4498 0.7561 23 6 10.9667 -3.7504 1.7342 24 6 10.0861 -4.2461 -0.4662 25 6 2.3936 -1.2308 -0.0006 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 3.3318 -3.4350 -0.5698 30 1 4.7889 -4.3912 -0.9313 31 1 7.6922 -2.9520 -2.5861 32 1 6.1058 -2.9224 2.0051 33 1 5.9080 -4.3916 1.0201 34 1 7.5803 -3.6214 -0.5711 35 1 7.6834 -2.0390 0.2376 36 1 8.5158 -3.1447 2.2950 37 1 8.4127 -4.7270 1.4864 38 1 10.8833 -4.7903 2.0501 39 1 11.9430 -3.5867 1.2781 40 1 10.8557 -3.0977 2.6001 41 1 9.3350 -3.9537 -1.1999 42 1 11.0810 -4.0711 -0.8757 43 1 9.9710 -5.3039 -0.2300 44 1 2.0504 -1.9549 -0.7394 45 1 2.4347 -1.6789 0.9922 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823736014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:32 Heat of formation + Delta-G solvation = -2.330963 kcal Electronic energy + Delta-G solvation = -25807.802755 eV Core-core repulsion = 22249.070937 eV Total energy + Delta-G solvation = -3558.731818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03311 -38.24828 -37.08159 -35.06944 -33.40564 -32.66036 -31.66567 -29.87376 -28.17962 -27.46700 -27.23081 -25.62853 -23.99836 -22.88659 -21.78224 -20.14852 -19.48434 -18.33599 -17.21880 -15.87446 -15.73159 -15.47834 -15.24152 -15.00160 -14.89394 -14.57305 -14.21845 -13.82303 -13.56617 -13.22654 -13.05385 -12.75363 -12.58452 -12.38258 -12.10476 -12.08531 -11.86479 -11.75621 -11.64003 -11.38418 -11.29596 -11.10007 -11.02362 -10.91146 -10.76323 -10.55243 -10.22732 -9.99239 -9.69519 -9.32854 -9.19003 -8.72269 -8.50664 -7.93520 -7.39565 -6.23695 -4.49354 2.15875 3.15332 3.23649 3.26903 3.34847 3.66806 4.17063 4.18631 4.42937 4.46568 4.96206 5.03498 5.16466 5.38142 5.42714 5.51323 5.53373 5.57201 5.66621 5.66702 5.74780 5.82257 5.95562 5.99542 6.00662 6.06093 6.15097 6.30812 6.32744 6.39047 6.42537 6.48720 6.58249 6.66795 6.85623 7.24459 7.39285 7.47743 7.52491 7.65162 7.80106 7.95715 8.05891 8.45548 8.69973 9.25708 9.30655 10.67201 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.005420 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.963532 B = 5165.090361 C = 6279.348613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.071 3.929 3 N -0.301 5.301 4 O -0.181 6.181 5 C 0.029 3.971 6 H 0.142 0.858 7 C 0.533 3.467 8 O -0.561 6.561 9 N -0.573 5.573 10 C 0.226 3.774 11 C -0.557 4.557 12 H 0.063 0.937 13 C 0.084 3.916 14 N -0.849 5.849 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.137 3.863 20 C -0.144 4.144 21 C 0.059 3.941 22 N -0.544 5.544 23 C 0.026 3.974 24 C 0.023 3.977 25 C -0.135 4.135 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.020 0.980 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.137 0.863 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.017 0.983 44 H 0.111 0.889 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 -4.493 3.420 7.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 N -0.041 5.041 4 O -0.200 6.200 5 C -0.032 4.032 6 H 0.158 0.842 7 C 0.319 3.681 8 O -0.441 6.441 9 N -0.304 5.304 10 C 0.107 3.893 11 C -0.595 4.595 12 H 0.081 0.919 13 C -0.124 4.124 14 N -0.484 5.484 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.013 3.987 20 C -0.183 4.183 21 C -0.070 4.070 22 N -0.267 5.267 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.175 4.175 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.130 0.870 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.675 -2.577 3.691 5.811 hybrid contribution 0.424 -1.364 -0.711 1.596 sum -3.251 -3.941 2.980 5.914 Atomic orbital electron populations 1.20356 0.85816 1.04103 1.03641 1.26226 0.97819 0.92873 0.95365 1.77744 0.90374 1.23810 1.12215 1.91321 1.13773 1.26825 1.88108 1.24166 0.93963 0.81949 1.03149 0.84151 1.19593 0.84331 0.82603 0.81556 1.90616 1.50529 1.64384 1.38567 1.48612 1.37865 1.07982 1.35990 1.19426 0.90031 0.93797 0.86045 1.21303 0.94476 1.39492 1.04224 0.91869 1.25013 0.95955 0.94221 0.97171 1.69579 0.98833 1.41208 1.38754 0.86685 0.77648 0.80562 0.83564 1.19836 1.20821 1.19894 1.21051 0.89300 0.95213 0.93126 1.22517 0.90532 1.03474 1.01746 1.22198 0.88732 0.97682 0.98345 1.61930 1.02798 1.56194 1.05815 1.22358 0.95353 0.98434 0.96133 1.22453 1.02338 0.94311 0.93419 1.23001 0.91707 0.98319 1.04427 0.89739 0.90159 0.89675 0.96157 0.93451 0.92116 0.93312 0.92351 0.84565 0.91948 0.92317 0.96025 0.96390 0.91999 0.91834 0.89304 0.92544 0.96428 0.87040 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.49 36.01 0.38 -0.42 16 2 C 0.07 1.09 7.45 -78.57 -0.59 0.51 16 3 N -0.30 -5.88 12.45 35.65 0.44 -5.44 16 4 O -0.18 -4.25 11.84 -30.20 -0.36 -4.61 16 5 C 0.03 0.62 3.18 -26.95 -0.09 0.53 16 6 H 0.14 3.21 5.39 -51.93 -0.28 2.93 16 7 C 0.53 12.68 6.65 -10.98 -0.07 12.61 16 8 O -0.56 -15.21 16.12 -13.25 -0.21 -15.42 16 9 N -0.57 -12.45 2.31 -175.06 -0.40 -12.86 16 10 C 0.23 4.71 5.13 -5.20 -0.03 4.68 16 11 C -0.56 -12.67 6.27 -34.44 -0.22 -12.89 16 12 H 0.06 1.40 7.30 -52.49 -0.38 1.02 16 13 C 0.08 2.00 5.40 -17.82 -0.10 1.90 16 14 N -0.85 -20.39 8.83 55.43 0.49 -19.90 16 15 Si 0.89 19.48 29.54 -169.99 -5.02 14.46 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 19 C 0.14 2.78 5.29 -4.04 -0.02 2.76 16 20 C -0.14 -3.02 4.39 -26.73 -0.12 -3.14 16 21 C 0.06 1.05 4.95 -3.83 -0.02 1.03 16 22 N -0.54 -9.36 5.02 -251.26 -1.26 -10.62 16 23 C 0.03 0.36 9.57 60.07 0.57 0.93 16 24 C 0.02 0.37 9.32 60.07 0.56 0.93 16 25 C -0.13 -2.23 5.27 -26.47 -0.14 -2.37 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.02 0.37 6.07 -51.93 -0.32 0.06 16 30 H 0.05 1.03 7.77 -51.93 -0.40 0.62 16 31 H 0.27 6.39 8.21 -40.82 -0.34 6.05 16 32 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 33 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 34 H 0.14 3.02 3.37 -51.93 -0.17 2.84 16 35 H 0.06 1.57 7.92 -51.93 -0.41 1.15 16 36 H 0.06 1.03 8.06 -51.93 -0.42 0.62 16 37 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 41 H 0.09 1.62 6.36 -51.93 -0.33 1.29 16 42 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 43 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.11 1.63 7.08 -51.93 -0.37 1.26 16 45 H 0.09 1.48 7.90 -51.93 -0.41 1.07 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -29.39 355.00 -8.08 -37.47 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.23 Total: 4.52 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 0.13 Total: 7.06 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.73 Total: -48.82 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.57 Total: -20.04 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.39 -8.08 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823736014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.135 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds