Wall clock time and date at job start Tue Mar 31 2020 03:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.27641 * 125.76533 * 2 1 4 4 O 1.41440 * 113.18215 * 179.72632 * 3 2 1 5 5 C 1.44243 * 107.47941 * 17.31330 * 4 3 2 6 6 H 1.09006 * 111.01252 * 93.02361 * 5 4 3 7 7 C 1.50698 * 111.01428 * 216.85364 * 5 4 3 8 8 O 1.21281 * 120.00219 * 356.57791 * 7 5 4 9 9 N 1.34781 * 120.00346 * 176.57593 * 7 5 4 10 10 C 1.46496 * 119.99556 * 5.21645 * 9 7 5 11 11 C 1.50699 * 109.47458 * 53.70830 * 10 9 7 12 12 H 1.07997 * 119.99844 * 244.26160 * 11 10 9 13 13 C 1.37870 * 119.99959 * 63.98565 * 11 10 9 14 14 N 1.31516 * 120.00270 * 1.19913 * 13 11 10 15 15 Si 1.86804 * 120.00061 * 181.19434 * 13 11 10 16 16 H 1.48506 * 109.46710 * 59.99915 * 15 13 11 17 17 H 1.48494 * 109.47248 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47189 * 300.00216 * 15 13 11 19 19 C 1.46502 * 119.99880 * 185.21008 * 9 7 5 20 20 C 1.52998 * 109.47262 * 276.22684 * 19 9 7 21 21 C 1.52995 * 109.46894 * 172.59062 * 20 19 9 22 22 N 1.46900 * 109.47198 * 180.02562 * 21 20 19 23 23 C 1.46905 * 111.00117 * 170.00021 * 22 21 20 24 24 C 1.46902 * 110.99900 * 293.95565 * 22 21 20 25 25 C 1.51682 * 125.76572 * 180.02562 * 2 1 3 26 26 H 1.08998 * 109.46970 * 269.97595 * 1 2 3 27 27 H 1.09002 * 109.46971 * 29.97876 * 1 2 3 28 28 H 1.09004 * 109.46661 * 149.97725 * 1 2 3 29 29 H 1.09000 * 109.47154 * 293.69974 * 10 9 7 30 30 H 1.09005 * 109.46950 * 173.70622 * 10 9 7 31 31 H 0.97002 * 120.00082 * 184.94417 * 14 13 11 32 32 H 1.08995 * 109.46751 * 36.23770 * 19 9 7 33 33 H 1.09000 * 109.46456 * 156.22823 * 19 9 7 34 34 H 1.08999 * 109.47463 * 292.59496 * 20 19 9 35 35 H 1.09003 * 109.46813 * 52.59888 * 20 19 9 36 36 H 1.08999 * 109.47420 * 300.00460 * 21 20 19 37 37 H 1.09004 * 109.47177 * 60.00514 * 21 20 19 38 38 H 1.09005 * 109.46743 * 59.99940 * 23 22 21 39 39 H 1.09003 * 109.47028 * 179.97438 * 23 22 21 40 40 H 1.08995 * 109.47279 * 299.99983 * 23 22 21 41 41 H 1.08996 * 109.47124 * 60.00054 * 24 22 21 42 42 H 1.09001 * 109.46868 * 179.97438 * 24 22 21 43 43 H 1.08997 * 109.47196 * 299.99546 * 24 22 21 44 44 H 1.08997 * 110.80825 * 46.45803 * 25 2 1 45 45 H 1.08995 * 110.81238 * 282.94941 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6335 0.7276 0.0062 5 6 3.7718 -0.6499 -0.3989 6 1 3.9322 -0.7268 -1.4743 7 6 4.8835 -1.3274 0.3601 8 8 5.5612 -0.6913 1.1393 9 7 5.1249 -2.6401 0.1730 10 6 4.3839 -3.3825 -0.8497 11 6 4.5165 -2.6793 -2.1759 12 1 3.6438 -2.2600 -2.6544 13 6 5.7527 -2.5662 -2.7757 14 7 6.8126 -3.0925 -2.2020 15 14 5.9223 -1.6654 -4.4034 16 1 5.4727 -0.2594 -4.2402 17 1 7.3435 -1.6833 -4.8333 18 1 5.0854 -2.3366 -5.4302 19 6 6.1282 -3.3245 0.9923 20 6 7.5163 -3.1057 0.3871 21 6 8.5799 -3.6603 1.3368 22 7 9.9127 -3.4498 0.7561 23 6 10.9667 -3.7504 1.7342 24 6 10.0861 -4.2461 -0.4662 25 6 2.3936 -1.2308 -0.0006 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 3.3318 -3.4350 -0.5698 30 1 4.7889 -4.3912 -0.9313 31 1 7.6922 -2.9520 -2.5861 32 1 6.1058 -2.9224 2.0051 33 1 5.9080 -4.3916 1.0201 34 1 7.5803 -3.6214 -0.5711 35 1 7.6834 -2.0390 0.2376 36 1 8.5158 -3.1447 2.2950 37 1 8.4127 -4.7270 1.4864 38 1 10.8833 -4.7903 2.0501 39 1 11.9430 -3.5867 1.2781 40 1 10.8557 -3.0977 2.6001 41 1 9.3350 -3.9537 -1.1999 42 1 11.0810 -4.0711 -0.8757 43 1 9.9710 -5.3039 -0.2300 44 1 2.0504 -1.9549 -0.7394 45 1 2.4347 -1.6789 0.9922 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823736014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:32 Heat of formation + Delta-G solvation = -21.281583 kcal Electronic energy + Delta-G solvation = -25808.624516 eV Core-core repulsion = 22249.070937 eV Total energy + Delta-G solvation = -3559.553578 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60708 -39.90302 -38.48137 -36.86828 -34.78534 -34.39117 -33.31577 -31.37415 -29.23770 -29.14368 -28.44514 -27.17065 -25.62225 -24.52201 -23.28881 -21.64185 -20.83857 -20.01508 -18.96851 -17.44329 -17.37311 -17.05767 -16.85967 -16.56152 -16.31723 -16.04720 -15.62009 -15.22158 -15.05923 -14.60603 -14.54521 -14.21395 -13.98463 -13.73710 -13.55958 -13.36724 -13.28516 -13.16218 -13.04920 -12.98171 -12.75448 -12.65099 -12.54893 -12.40804 -12.31196 -12.16673 -11.77360 -11.52553 -11.43855 -11.01476 -10.84609 -10.54419 -10.21426 -9.23991 -9.15631 -8.05684 -6.32048 0.90301 1.37431 1.45405 1.45880 1.70218 1.95791 2.37412 2.61943 3.11353 3.14052 3.24893 3.61203 3.71914 3.94031 4.15193 4.21675 4.28874 4.35879 4.50702 4.54174 4.59811 4.67277 4.71975 4.72493 4.77263 4.81391 4.82705 4.84193 4.90198 4.91933 4.95715 4.99119 5.13752 5.19890 5.35886 5.51978 5.65253 5.83387 6.15292 6.17673 6.18361 6.34966 6.43621 6.65641 6.92273 7.42502 7.50381 8.82061 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.005420 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.963532 B = 5165.090361 C = 6279.348613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.103 3.897 3 N -0.339 5.339 4 O -0.235 6.235 5 C 0.025 3.975 6 H 0.123 0.877 7 C 0.523 3.477 8 O -0.607 6.607 9 N -0.567 5.567 10 C 0.226 3.774 11 C -0.556 4.556 12 H 0.070 0.930 13 C 0.045 3.955 14 N -0.860 5.860 15 Si 0.927 3.073 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.260 1.260 19 C 0.132 3.868 20 C -0.129 4.129 21 C 0.067 3.933 22 N -0.570 5.570 23 C 0.027 3.973 24 C 0.029 3.971 25 C -0.129 4.129 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.128 0.872 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.140 0.860 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -6.324 3.650 9.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 N -0.085 5.085 4 O -0.250 6.250 5 C -0.036 4.036 6 H 0.140 0.860 7 C 0.310 3.690 8 O -0.491 6.491 9 N -0.297 5.297 10 C 0.108 3.892 11 C -0.594 4.594 12 H 0.088 0.912 13 C -0.161 4.161 14 N -0.495 5.495 15 Si 0.754 3.246 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.184 1.184 19 C 0.009 3.991 20 C -0.168 4.168 21 C -0.061 4.061 22 N -0.294 5.294 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.168 4.168 26 H 0.128 0.872 27 H 0.108 0.892 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.158 0.842 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.673 -4.453 3.899 8.198 hybrid contribution 0.970 -0.815 -0.774 1.485 sum -4.703 -5.268 3.125 7.722 Atomic orbital electron populations 1.20708 0.81056 1.06210 1.05828 1.27167 1.00063 0.91162 0.90635 1.77800 0.88569 1.25244 1.16937 1.91280 1.17247 1.27611 1.88832 1.24009 0.95886 0.82166 1.01497 0.85968 1.20112 0.84629 0.83012 0.81268 1.90573 1.52235 1.65445 1.40831 1.48675 1.37713 1.07572 1.35715 1.19510 0.91708 0.92906 0.85095 1.21564 0.94308 1.38719 1.04843 0.91191 1.25518 0.96477 0.95209 0.98865 1.69680 0.98618 1.42060 1.39166 0.86098 0.77112 0.78975 0.82383 1.21683 1.21708 1.18408 1.21205 0.88780 0.96504 0.92642 1.22281 0.92170 0.99886 1.02430 1.22027 0.88510 0.98322 0.97238 1.61880 1.03190 1.57307 1.07027 1.22399 0.94797 0.99337 0.95523 1.22364 1.02338 0.94716 0.92520 1.23051 0.88980 0.99107 1.05665 0.87219 0.89229 0.86377 0.92788 0.93913 0.92788 0.93724 0.89637 0.85451 0.97174 0.92424 0.94242 0.94960 0.90530 0.91592 0.92076 0.90880 0.95225 0.84247 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.49 71.24 0.75 -0.46 16 2 C 0.10 2.91 7.45 46.90 0.35 3.26 16 3 N -0.34 -13.18 12.45 -40.62 -0.51 -13.69 16 4 O -0.24 -11.44 11.84 -20.44 -0.24 -11.68 16 5 C 0.03 1.11 3.18 30.45 0.10 1.20 16 6 H 0.12 5.69 5.39 -2.38 -0.01 5.67 16 7 C 0.52 25.46 6.65 87.66 0.58 26.04 16 8 O -0.61 -34.52 16.12 14.95 0.24 -34.28 16 9 N -0.57 -24.63 2.31 -826.16 -1.91 -26.54 16 10 C 0.23 9.08 5.13 85.63 0.44 9.52 16 11 C -0.56 -24.84 6.27 25.60 0.16 -24.68 16 12 H 0.07 2.99 7.30 -2.91 -0.02 2.97 16 13 C 0.04 2.14 5.40 84.65 0.46 2.60 16 14 N -0.86 -42.13 8.83 21.44 0.19 -41.94 16 15 Si 0.93 40.45 29.54 68.60 2.03 42.48 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 19 C 0.13 5.37 5.29 86.38 0.46 5.83 16 20 C -0.13 -5.55 4.39 30.59 0.13 -5.41 16 21 C 0.07 2.39 4.95 86.30 0.43 2.82 16 22 N -0.57 -19.36 5.02 -948.84 -4.76 -24.13 16 23 C 0.03 0.71 9.57 127.69 1.22 1.93 16 24 C 0.03 0.91 9.32 127.69 1.19 2.10 16 25 C -0.13 -3.96 5.27 30.77 0.16 -3.80 16 26 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.80 6.07 -2.39 -0.01 1.79 16 30 H 0.04 1.77 7.77 -2.38 -0.02 1.76 16 31 H 0.26 12.92 8.21 -92.71 -0.76 12.16 16 32 H 0.04 1.84 7.69 -2.39 -0.02 1.82 16 33 H 0.09 2.99 7.85 -2.39 -0.02 2.97 16 34 H 0.13 5.78 3.37 -2.39 -0.01 5.77 16 35 H 0.01 0.50 7.92 -2.39 -0.02 0.48 16 36 H 0.06 2.03 8.06 -2.39 -0.02 2.01 16 37 H 0.04 1.26 8.12 -2.38 -0.02 1.24 16 38 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.08 1.75 8.12 -2.39 -0.02 1.73 16 40 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 41 H 0.06 2.27 6.36 -2.39 -0.02 2.26 16 42 H 0.07 2.02 8.12 -2.39 -0.02 2.00 16 43 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.14 3.50 7.08 -2.39 -0.02 3.48 16 45 H 0.10 3.03 7.90 -2.39 -0.02 3.01 16 Total: -1.00 -68.36 355.00 2.45 -65.91 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.98 Total: 22.92 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 6.43 Total: 20.96 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -6.99 Total: -106.30 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: 0.00 Total: -45.96 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -68.36 2.45 -65.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823736014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.625 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds