Wall clock time and date at job start Tue Mar 31 2020 03:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 C 1.46766 * 124.35325 * 179.72239 * 5 2 1 7 7 C 1.54664 * 105.38352 * 162.85498 * 6 5 2 8 8 H 1.09003 * 110.84724 * 143.79290 * 7 6 5 9 9 C 1.52996 * 111.19337 * 267.59811 * 7 6 5 10 10 N 1.46507 * 109.46680 * 178.86302 * 9 7 6 11 11 C 1.34776 * 119.99720 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00138 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99925 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99696 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46707 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00062 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99729 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00255 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99807 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47485 * 89.99938 * 19 17 15 21 21 H 1.48504 * 109.46870 * 210.00155 * 19 17 15 22 22 H 1.48505 * 109.46937 * 329.99725 * 19 17 15 23 23 C 1.54624 * 101.68260 * 25.77451 * 7 6 5 24 24 C 1.34422 * 124.35128 * 0.03160 * 5 2 1 25 25 O 1.21287 * 124.93768 * 0.42168 * 24 5 2 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.08990 * 110.25067 * 281.98964 * 6 5 2 36 36 H 1.09007 * 110.24333 * 43.98993 * 6 5 2 37 37 H 1.08997 * 109.47221 * 298.85733 * 9 7 6 38 38 H 1.09001 * 109.47286 * 58.86650 * 9 7 6 39 39 H 0.96999 * 119.99681 * 0.02562 * 10 9 7 40 40 H 0.96999 * 119.99475 * 0.02562 * 13 11 10 41 41 H 1.09005 * 109.47308 * 299.99173 * 14 13 11 42 42 H 1.08993 * 109.47163 * 60.00183 * 14 13 11 43 43 H 0.97006 * 120.00208 * 180.02562 * 18 17 15 44 44 H 1.08997 * 110.48691 * 216.30835 * 23 7 6 45 45 H 1.08995 * 110.49326 * 93.65976 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 6 3.4367 -0.8740 -1.5255 7 6 3.4693 -1.9976 -2.5878 8 1 4.2484 -1.8103 -3.3268 9 6 3.6547 -3.3695 -1.9364 10 7 3.6530 -4.4059 -2.9718 11 6 3.8021 -5.7009 -2.6293 12 8 3.9386 -6.0089 -1.4611 13 7 3.8011 -6.6544 -3.5820 14 6 3.9638 -8.0619 -3.2096 15 6 3.9265 -8.9170 -4.4500 16 1 3.7953 -8.4579 -5.4187 17 6 4.0611 -10.2854 -4.3482 18 7 4.2224 -10.8443 -3.1687 19 14 4.0157 -11.3454 -5.8857 20 1 5.3919 -11.4993 -6.4217 21 1 3.4631 -12.6821 -5.5492 22 1 3.1557 -10.6974 -6.9084 23 6 2.0643 -1.8708 -3.2208 24 6 1.2248 -1.2327 -2.1361 25 8 0.0123 -1.2127 -2.1173 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 3.8513 0.0474 -1.9342 36 1 3.9935 -1.1784 -0.6391 37 1 4.6039 -3.3923 -1.4011 38 1 2.8387 -3.5530 -1.2373 39 1 3.5445 -4.1601 -3.9039 40 1 3.6933 -6.4085 -4.5141 41 1 4.9202 -8.1958 -2.7042 42 1 3.1550 -8.3567 -2.5411 43 1 4.3175 -11.8071 -3.0971 44 1 1.6716 -2.8545 -3.4780 45 1 2.0993 -1.2307 -4.1023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854027072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:46 Heat of formation + Delta-G solvation = -72.328917 kcal Electronic energy + Delta-G solvation = -24374.355675 eV Core-core repulsion = 20812.588518 eV Total energy + Delta-G solvation = -3561.767157 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12222 -39.17051 -36.98377 -36.71518 -34.27062 -33.78283 -32.28127 -30.62364 -28.39874 -27.75972 -27.64011 -27.07368 -25.26633 -22.47620 -21.96704 -20.86159 -20.16531 -18.82808 -18.06495 -16.97505 -16.63194 -15.94224 -15.57816 -15.46242 -15.08041 -14.67939 -14.31513 -14.29059 -14.06237 -13.93803 -13.64037 -13.47043 -13.14478 -12.85825 -12.64940 -12.44673 -12.35147 -12.00532 -11.94503 -11.93238 -11.71414 -11.51606 -11.45841 -11.28484 -11.14526 -10.93952 -10.86815 -10.29055 -9.55697 -9.42943 -9.35588 -8.92678 -8.79471 -8.67481 -7.75281 -6.13999 -4.20542 2.44697 2.69167 3.25690 3.26894 3.32724 3.36355 3.94830 4.05963 4.17604 4.34288 4.38312 4.49708 4.58730 4.67162 4.73741 5.07958 5.09489 5.18688 5.20104 5.22162 5.22791 5.29930 5.42720 5.44047 5.46178 5.52591 5.56944 5.64585 5.74440 5.78243 5.92963 6.00147 6.10639 6.44628 6.80964 6.94661 7.11355 7.52389 7.55892 7.58745 7.91264 8.04367 8.05231 8.77732 8.94810 9.33920 9.49167 10.96281 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.002581 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.729036 B =10846.311659 C =11003.471273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.173 3.827 3 C -0.156 4.156 4 C -0.160 4.160 5 N -0.611 5.611 6 C 0.111 3.889 7 C -0.112 4.112 8 H 0.105 0.895 9 C 0.151 3.849 10 N -0.758 5.758 11 C 0.693 3.307 12 O -0.601 6.601 13 N -0.729 5.729 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.156 4.156 24 C 0.521 3.479 25 O -0.528 6.528 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.391 0.609 40 H 0.386 0.614 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.107 0.893 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 26.286 2.767 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.090 3.910 3 C -0.214 4.214 4 C -0.218 4.218 5 N -0.346 5.346 6 C -0.013 4.013 7 C -0.131 4.131 8 H 0.123 0.877 9 C 0.026 3.974 10 N -0.416 5.416 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.196 4.196 24 C 0.309 3.691 25 O -0.405 6.405 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.225 0.775 40 H 0.218 0.782 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.125 0.875 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.997 25.798 4.056 26.191 hybrid contribution 0.062 -0.429 -1.627 1.684 sum -1.935 25.369 2.429 25.559 Atomic orbital electron populations 1.22098 0.92132 1.03744 1.01865 1.20465 0.95346 0.91410 0.83819 1.22179 1.01438 0.95212 1.02560 1.22205 1.01588 1.01344 0.96633 1.48423 1.07094 1.56610 1.22506 1.22037 0.82445 0.97930 0.98881 1.22463 0.97785 0.94810 0.98090 0.87670 1.20986 1.02289 0.83962 0.90187 1.45100 1.81442 1.05350 1.09682 1.16136 0.78483 0.80298 0.85842 1.90877 1.58105 1.81424 1.17553 1.45714 1.76114 1.08380 1.07892 1.18979 0.97290 0.72979 0.96184 1.21226 1.52074 0.91848 0.92845 0.91948 1.24947 0.94795 0.97831 0.96484 1.69978 1.48126 1.11339 1.22866 0.86413 0.78278 0.79631 0.82553 1.20493 1.21021 1.19777 1.22502 0.94981 1.03856 0.98255 1.20844 0.87437 0.77673 0.83185 1.90734 1.12859 1.59420 1.77464 0.91350 0.92486 0.91154 0.91316 0.92205 0.92249 0.91799 0.92088 0.91297 0.90553 0.89794 0.91304 0.91896 0.77527 0.78165 0.95751 0.95759 0.92467 0.87487 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 7.00 37.16 0.26 -1.14 16 2 C 0.17 1.45 1.20 -131.82 -0.16 1.29 16 3 C -0.16 -0.98 8.53 37.15 0.32 -0.66 16 4 C -0.16 -1.23 8.50 37.16 0.32 -0.92 16 5 N -0.61 -5.53 2.76 -157.46 -0.43 -5.97 16 6 C 0.11 0.72 6.16 -3.02 -0.02 0.71 16 7 C -0.11 -0.82 3.21 -88.89 -0.29 -1.10 16 8 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 9 C 0.15 1.75 5.04 -4.04 -0.02 1.73 16 10 N -0.76 -10.51 5.11 -65.22 -0.33 -10.84 16 11 C 0.69 14.10 8.57 -86.91 -0.74 13.35 16 12 O -0.60 -15.01 16.34 5.29 0.09 -14.92 16 13 N -0.73 -15.50 5.55 -66.41 -0.37 -15.87 16 14 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 15 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 19 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.16 -1.34 6.23 -26.74 -0.17 -1.51 16 24 C 0.52 5.99 7.84 -10.86 -0.09 5.91 16 25 O -0.53 -8.00 13.99 5.55 0.08 -7.93 16 26 H 0.07 0.77 7.06 -51.93 -0.37 0.41 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.87 7.08 -51.93 -0.37 0.50 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.32 7.89 -51.93 -0.41 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.42 7.22 -51.93 -0.37 0.04 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.51 6.91 -51.92 -0.36 0.15 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.39 4.16 8.21 -40.82 -0.34 3.83 16 40 H 0.39 6.94 8.34 -40.82 -0.34 6.60 16 41 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.11 1.07 7.40 -51.93 -0.38 0.68 16 45 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -35.52 364.05 -8.35 -43.86 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.54 Total: 4.46 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -1.03 Total: 11.37 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.40 Total: -58.24 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.16 Total: -22.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.52 -8.35 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854027072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.467 kcal (2) G-P(sol) polarization free energy of solvation -35.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds