Wall clock time and date at job start Tue Mar 31 2020 03:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 C 1.46766 * 124.35325 * 179.72239 * 5 2 1 7 7 C 1.54664 * 105.38352 * 162.85498 * 6 5 2 8 8 H 1.09003 * 110.84724 * 143.79290 * 7 6 5 9 9 C 1.52996 * 111.19337 * 267.59811 * 7 6 5 10 10 N 1.46507 * 109.46680 * 178.86302 * 9 7 6 11 11 C 1.34776 * 119.99720 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00138 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99925 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99696 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.46707 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00062 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99729 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00255 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99807 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47485 * 89.99938 * 19 17 15 21 21 H 1.48504 * 109.46870 * 210.00155 * 19 17 15 22 22 H 1.48505 * 109.46937 * 329.99725 * 19 17 15 23 23 C 1.54624 * 101.68260 * 25.77451 * 7 6 5 24 24 C 1.34422 * 124.35128 * 0.03160 * 5 2 1 25 25 O 1.21287 * 124.93768 * 0.42168 * 24 5 2 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.08990 * 110.25067 * 281.98964 * 6 5 2 36 36 H 1.09007 * 110.24333 * 43.98993 * 6 5 2 37 37 H 1.08997 * 109.47221 * 298.85733 * 9 7 6 38 38 H 1.09001 * 109.47286 * 58.86650 * 9 7 6 39 39 H 0.96999 * 119.99681 * 0.02562 * 10 9 7 40 40 H 0.96999 * 119.99475 * 0.02562 * 13 11 10 41 41 H 1.09005 * 109.47308 * 299.99173 * 14 13 11 42 42 H 1.08993 * 109.47163 * 60.00183 * 14 13 11 43 43 H 0.97006 * 120.00208 * 180.02562 * 18 17 15 44 44 H 1.08997 * 110.48691 * 216.30835 * 23 7 6 45 45 H 1.08995 * 110.49326 * 93.65976 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 6 3.4367 -0.8740 -1.5255 7 6 3.4693 -1.9976 -2.5878 8 1 4.2484 -1.8103 -3.3268 9 6 3.6547 -3.3695 -1.9364 10 7 3.6530 -4.4059 -2.9718 11 6 3.8021 -5.7009 -2.6293 12 8 3.9386 -6.0089 -1.4611 13 7 3.8011 -6.6544 -3.5820 14 6 3.9638 -8.0619 -3.2096 15 6 3.9265 -8.9170 -4.4500 16 1 3.7953 -8.4579 -5.4187 17 6 4.0611 -10.2854 -4.3482 18 7 4.2224 -10.8443 -3.1687 19 14 4.0157 -11.3454 -5.8857 20 1 5.3919 -11.4993 -6.4217 21 1 3.4631 -12.6821 -5.5492 22 1 3.1557 -10.6974 -6.9084 23 6 2.0643 -1.8708 -3.2208 24 6 1.2248 -1.2327 -2.1361 25 8 0.0123 -1.2127 -2.1173 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 3.8513 0.0474 -1.9342 36 1 3.9935 -1.1784 -0.6391 37 1 4.6039 -3.3923 -1.4011 38 1 2.8387 -3.5530 -1.2373 39 1 3.5445 -4.1601 -3.9039 40 1 3.6933 -6.4085 -4.5141 41 1 4.9202 -8.1958 -2.7042 42 1 3.1550 -8.3567 -2.5411 43 1 4.3175 -11.8071 -3.0971 44 1 1.6716 -2.8545 -3.4780 45 1 2.0993 -1.2307 -4.1023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854027072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:44 Heat of formation + Delta-G solvation = -99.150657 kcal Electronic energy + Delta-G solvation = -24375.518753 eV Core-core repulsion = 20812.588518 eV Total energy + Delta-G solvation = -3562.930235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.90598 -40.76761 -37.92030 -37.53748 -36.12611 -35.14010 -34.26788 -31.55605 -29.43038 -28.97087 -28.23999 -28.20424 -26.39652 -24.42952 -22.72316 -21.82266 -21.62885 -19.82344 -19.53188 -18.11992 -17.72745 -17.40217 -16.96676 -16.57902 -16.40516 -16.15048 -15.42811 -15.21117 -15.08632 -14.89058 -14.69926 -14.66141 -14.21415 -14.03354 -13.99159 -13.74879 -13.37690 -13.04902 -12.97269 -12.89282 -12.70844 -12.65183 -12.48809 -12.32847 -12.21627 -12.19567 -11.94505 -11.85689 -11.46278 -11.24941 -10.79312 -10.42659 -10.26001 -9.64032 -9.55565 -8.27348 -6.43678 1.44239 1.47174 1.57905 1.59968 1.88637 2.05711 2.26952 2.40663 3.07775 3.36481 3.40163 3.61981 3.70761 3.82570 3.92780 4.01543 4.10165 4.40682 4.55481 4.63278 4.67498 4.70010 4.71711 4.73830 4.81087 4.82558 4.90641 4.94708 4.95684 5.10029 5.16023 5.18481 5.28493 5.28897 5.37525 5.50119 5.55058 5.69680 5.74703 5.86707 6.20899 6.29141 6.68533 7.22491 7.25922 7.34657 7.75132 8.85105 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.002581 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.729036 B =10846.311659 C =11003.471273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 C -0.147 4.147 4 C -0.156 4.156 5 N -0.610 5.610 6 C 0.108 3.892 7 C -0.094 4.094 8 H 0.145 0.855 9 C 0.148 3.852 10 N -0.729 5.729 11 C 0.689 3.311 12 O -0.652 6.652 13 N -0.723 5.723 14 C 0.285 3.715 15 C -0.553 4.553 16 H 0.085 0.915 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.256 1.256 23 C -0.151 4.151 24 C 0.503 3.497 25 O -0.579 6.579 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.413 0.587 40 H 0.405 0.595 41 H -0.013 1.013 42 H -0.018 1.018 43 H 0.268 0.732 44 H 0.091 0.909 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 28.463 0.596 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.082 3.918 3 C -0.205 4.205 4 C -0.214 4.214 5 N -0.343 5.343 6 C -0.014 4.014 7 C -0.112 4.112 8 H 0.163 0.837 9 C 0.024 3.976 10 N -0.387 5.387 11 C 0.389 3.611 12 O -0.534 6.534 13 N -0.377 5.377 14 C 0.162 3.838 15 C -0.591 4.591 16 H 0.103 0.897 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.809 3.191 20 H -0.194 1.194 21 H -0.211 1.211 22 H -0.179 1.179 23 C -0.191 4.191 24 C 0.292 3.708 25 O -0.459 6.459 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.250 0.750 40 H 0.241 0.759 41 H 0.004 0.996 42 H 0.000 1.000 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.499 28.072 1.841 28.137 hybrid contribution -0.419 -1.037 -0.843 1.400 sum -0.918 27.035 0.998 27.069 Atomic orbital electron populations 1.21995 0.93873 1.01484 1.01849 1.20615 0.94136 0.93139 0.83888 1.22106 1.02423 0.93041 1.02944 1.22179 1.02398 0.99783 0.97011 1.48596 1.08123 1.55608 1.21992 1.22309 0.80897 0.99024 0.99193 1.22423 0.98077 0.91991 0.98746 0.83698 1.21167 1.01228 0.85550 0.89666 1.44830 1.79134 1.03231 1.11523 1.16348 0.78042 0.81971 0.84747 1.90843 1.60195 1.82669 1.19740 1.45280 1.76574 1.06667 1.09162 1.18391 0.93655 0.76192 0.95585 1.21610 1.51772 0.92305 0.93451 0.89716 1.26077 0.93939 0.99537 1.00151 1.70145 1.49215 1.11878 1.25821 0.85139 0.78854 0.77102 0.77996 1.19439 1.21106 1.17946 1.22516 0.94821 1.03285 0.98430 1.21454 0.87231 0.77734 0.84343 1.90707 1.15037 1.61419 1.78770 0.93093 0.90643 0.94531 0.90097 0.90462 0.92777 0.94526 0.90652 0.89783 0.86986 0.89002 0.91191 0.94831 0.75028 0.75909 0.99552 1.00019 0.92270 0.89095 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 7.00 71.98 0.50 -2.28 16 2 C 0.17 2.61 1.20 3.60 0.00 2.61 16 3 C -0.15 -1.46 8.53 71.98 0.61 -0.84 16 4 C -0.16 -2.26 8.50 71.98 0.61 -1.65 16 5 N -0.61 -10.23 2.76 -770.67 -2.13 -12.35 16 6 C 0.11 1.04 6.16 86.90 0.53 1.58 16 7 C -0.09 -1.05 3.21 -9.67 -0.03 -1.08 16 8 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 9 C 0.15 3.25 5.04 86.38 0.44 3.69 16 10 N -0.73 -19.29 5.11 -478.53 -2.45 -21.74 16 11 C 0.69 28.38 8.57 179.05 1.53 29.92 16 12 O -0.65 -33.89 16.34 -3.98 -0.07 -33.95 16 13 N -0.72 -30.99 5.55 -482.29 -2.68 -33.67 16 14 C 0.29 15.95 5.43 85.64 0.46 16.41 16 15 C -0.55 -30.28 9.28 25.60 0.24 -30.04 16 16 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 17 C 0.00 0.13 5.46 84.66 0.46 0.60 16 18 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 19 Si 0.99 42.45 29.54 68.60 2.03 44.48 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 C -0.15 -2.28 6.23 30.59 0.19 -2.09 16 24 C 0.50 11.49 7.84 87.90 0.69 12.18 16 25 O -0.58 -18.48 13.99 -3.05 -0.04 -18.53 16 26 H 0.05 1.22 7.06 -2.39 -0.02 1.20 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 0.99 7.08 -2.38 -0.02 0.97 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.52 7.89 -2.39 -0.02 0.50 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.87 7.22 -2.39 -0.02 0.85 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.09 0.81 6.91 -2.38 -0.02 0.79 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.41 7.64 8.21 -92.71 -0.76 6.88 16 40 H 0.41 14.05 8.34 -92.71 -0.77 13.28 16 41 H -0.01 -0.85 8.14 -2.38 -0.02 -0.86 16 42 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 43 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 44 H 0.09 1.71 7.40 -2.39 -0.02 1.69 16 45 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -83.83 364.05 0.66 -83.17 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.54 Total: 20.10 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 6.25 Total: 28.99 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -6.97 Total: -124.26 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.11 Total: -52.48 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -83.83 0.66 -83.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854027072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.983 kcal (2) G-P(sol) polarization free energy of solvation -83.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds