Wall clock time and date at job start Tue Mar 31 2020 03:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46838 * 2 1 4 4 C 1.50692 * 109.46939 * 119.99901 * 2 1 3 5 5 H 1.08006 * 119.99592 * 124.71153 * 4 2 1 6 6 C 1.37873 * 120.00458 * 304.69944 * 4 2 1 7 7 N 1.31517 * 120.00005 * 153.10911 * 6 4 2 8 8 Si 1.86798 * 120.00051 * 333.39042 * 6 4 2 9 9 H 1.48500 * 109.47203 * 179.71926 * 8 6 4 10 10 H 1.48502 * 109.47071 * 299.71494 * 8 6 4 11 11 H 1.48494 * 109.47485 * 59.71913 * 8 6 4 12 12 C 1.52999 * 109.47292 * 240.00193 * 2 1 3 13 13 N 1.46502 * 109.47124 * 59.99387 * 12 2 1 14 14 C 1.34773 * 120.00032 * 180.02562 * 13 12 2 15 15 O 1.21350 * 119.99867 * 0.02562 * 14 13 12 16 16 C 1.49449 * 120.00104 * 180.02562 * 14 13 12 17 17 O 1.21352 * 119.99841 * 7.00468 * 16 14 13 18 18 N 1.34779 * 120.00113 * 187.00500 * 16 14 13 19 19 C 1.46923 * 120.63091 * 7.07370 * 18 16 14 20 20 C 1.53190 * 108.78127 * 126.36420 * 19 18 16 21 21 C 1.53040 * 109.30799 * 54.63410 * 20 19 18 22 22 C 1.53049 * 109.53932 * 298.63453 * 21 20 19 23 23 H 1.08997 * 109.50085 * 301.41542 * 22 21 20 24 24 N 1.46900 * 109.49417 * 181.35123 * 22 21 20 25 25 C 1.46923 * 120.63129 * 186.78740 * 18 16 14 26 26 H 1.08993 * 109.46980 * 294.63458 * 1 2 3 27 27 H 1.08999 * 109.46948 * 54.63708 * 1 2 3 28 28 H 1.09001 * 109.46405 * 174.63487 * 1 2 3 29 29 H 1.09000 * 109.46756 * 184.41453 * 3 2 1 30 30 H 1.09005 * 109.46955 * 304.41415 * 3 2 1 31 31 H 1.09001 * 109.46931 * 64.41466 * 3 2 1 32 32 H 0.97001 * 120.00208 * 355.27376 * 7 6 4 33 33 H 1.08998 * 109.47280 * 179.97438 * 12 2 1 34 34 H 1.08995 * 109.47052 * 300.00242 * 12 2 1 35 35 H 0.97001 * 119.99917 * 0.02562 * 13 12 2 36 36 H 1.09005 * 109.58658 * 246.15427 * 19 18 16 37 37 H 1.09003 * 109.58445 * 6.57741 * 19 18 16 38 38 H 1.08991 * 109.49892 * 174.58640 * 20 19 18 39 39 H 1.08998 * 109.49464 * 294.65811 * 20 19 18 40 40 H 1.08993 * 109.46603 * 58.65692 * 21 20 19 41 41 H 1.08998 * 109.46043 * 178.63145 * 21 20 19 42 42 H 1.00909 * 110.99394 * 180.02562 * 24 22 21 43 43 H 1.00898 * 111.00192 * 303.95091 * 24 22 21 44 44 H 1.08998 * 109.58739 * 353.42167 * 25 18 16 45 45 H 1.09001 * 109.58739 * 113.84436 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.7145 -1.5420 1.1331 6 6 1.6213 -0.2985 2.4804 7 7 1.5918 -1.1548 3.4781 8 14 1.0988 1.4738 2.7549 9 1 0.6981 1.6577 4.1729 10 1 2.2333 2.3787 2.4398 11 1 -0.0501 1.7939 1.8703 12 6 2.0401 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 6 1.8768 -0.4913 -3.6695 15 8 2.5738 -1.4785 -3.7808 16 6 1.3790 0.2134 -4.8898 17 8 0.7904 1.2693 -4.7829 18 7 1.5838 -0.3236 -6.1088 19 6 2.1550 -1.6701 -6.2473 20 6 1.2265 -2.5115 -7.1285 21 6 0.9956 -1.7871 -8.4567 22 6 0.3212 -0.4386 -8.1937 23 1 -0.6243 -0.5995 -7.6759 24 7 0.0708 0.2417 -9.4714 25 6 1.2344 0.4239 -7.3245 26 1 -0.3633 0.4283 0.9341 27 1 -0.3633 0.5948 -0.8381 28 1 -0.3632 -1.0232 -0.0961 29 1 3.1271 1.4435 -0.0791 30 1 1.6135 1.9787 -0.8478 31 1 1.7426 1.9330 0.9269 32 1 1.7930 -2.0905 3.3204 33 1 3.1301 -0.7208 -1.2495 34 1 1.6768 -1.7488 -1.2493 35 1 0.9942 0.7582 -2.3564 36 1 3.1388 -1.6038 -6.7121 37 1 2.2436 -2.1324 -5.2641 38 1 1.6855 -3.4817 -7.3183 39 1 0.2727 -2.6533 -6.6204 40 1 1.9524 -1.6239 -8.9525 41 1 0.3547 -2.3949 -9.0953 42 1 -0.3741 1.1354 -9.3241 43 1 0.9244 0.3457 -9.9991 44 1 0.7156 1.3430 -7.0518 45 1 2.1414 0.6646 -7.8789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911016431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:36 Heat of formation + Delta-G solvation = -51.987876 kcal Electronic energy + Delta-G solvation = -25046.943505 eV Core-core repulsion = 21486.058402 eV Total energy + Delta-G solvation = -3560.885103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.98446 -39.06362 -37.85859 -36.89369 -34.70954 -33.43174 -32.41667 -31.53164 -28.91547 -27.10337 -26.39582 -25.80352 -24.53891 -23.03887 -22.81146 -20.83121 -19.92539 -19.14894 -17.69400 -17.05697 -16.72276 -16.34086 -16.11348 -15.65509 -15.16476 -14.89126 -14.82368 -14.65383 -14.21102 -13.96203 -13.49193 -13.35771 -13.11303 -12.87739 -12.73908 -12.65820 -12.11227 -11.96686 -11.88163 -11.66429 -11.43789 -11.32255 -10.90926 -10.88318 -10.65462 -10.23076 -10.12326 -9.92270 -9.62058 -9.18695 -9.01092 -8.91602 -8.78872 -8.71889 -8.20326 -6.57673 -4.15352 1.46554 2.32469 3.24619 3.31612 3.36828 3.55937 3.59682 4.07481 4.36877 4.42348 4.45663 4.58092 4.74685 4.81296 4.93626 5.09369 5.21607 5.24311 5.41160 5.52335 5.68524 5.69181 5.71304 5.86401 5.94007 6.00382 6.04008 6.11382 6.33905 6.37620 6.48051 6.55697 6.62137 6.66208 6.68289 6.88302 6.91676 6.98429 7.17960 7.39544 7.42207 7.78938 8.01359 8.18901 8.29394 8.79856 9.49252 10.79923 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034005 B = 0.003246 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.208917 B = 8623.836038 C = 9070.285575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.034 3.966 3 C -0.154 4.154 4 C -0.607 4.607 5 H 0.061 0.939 6 C 0.043 3.957 7 N -0.889 5.889 8 Si 1.050 2.950 9 H -0.299 1.299 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.138 3.862 13 N -0.682 5.682 14 C 0.500 3.500 15 O -0.522 6.522 16 C 0.508 3.492 17 O -0.525 6.525 18 N -0.581 5.581 19 C 0.063 3.937 20 C -0.134 4.134 21 C -0.114 4.114 22 C 0.078 3.922 23 H 0.086 0.914 24 N -0.838 5.838 25 C 0.075 3.925 26 H 0.059 0.941 27 H 0.023 0.977 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.272 0.728 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.410 0.590 36 H 0.067 0.933 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.344 0.656 43 H 0.340 0.660 44 H 0.092 0.908 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 1.704 -22.924 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.032 3.968 3 C -0.211 4.211 4 C -0.644 4.644 5 H 0.079 0.921 6 C -0.164 4.164 7 N -0.520 5.520 8 Si 0.883 3.117 9 H -0.227 1.227 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.016 3.984 13 N -0.333 5.333 14 C 0.280 3.720 15 O -0.401 6.401 16 C 0.291 3.709 17 O -0.401 6.401 18 N -0.315 5.315 19 C -0.058 4.058 20 C -0.173 4.173 21 C -0.152 4.152 22 C -0.035 4.035 23 H 0.104 0.896 24 N -0.367 5.367 25 C -0.050 4.050 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.085 0.915 37 H 0.166 0.834 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.111 0.889 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.967 1.990 -21.901 22.079 hybrid contribution 1.016 0.118 -0.943 1.391 sum -0.951 2.108 -22.845 22.961 Atomic orbital electron populations 1.22300 0.97776 1.00272 1.00079 1.18682 0.92525 0.92284 0.93261 1.22405 1.00972 0.98526 0.99158 1.21625 1.33150 1.19241 0.90393 0.92060 1.25679 0.93605 1.04705 0.92431 1.70846 1.41320 1.04620 1.35260 0.84236 0.76714 0.76236 0.74511 1.22727 1.21371 1.20150 1.21788 0.98833 0.96054 0.81695 1.46274 1.50378 1.31358 1.05268 1.19961 0.82162 0.84924 0.84904 1.90427 1.38540 1.26049 1.85120 1.20403 0.80050 0.85613 0.84805 1.90737 1.40108 1.22960 1.86252 1.47862 1.61456 1.17814 1.04384 1.23029 0.95507 0.80955 1.06315 1.21943 1.00753 0.99055 0.95555 1.21581 1.00597 0.95366 0.97633 1.21756 0.98502 0.94113 0.89120 0.89578 1.58990 1.30994 1.28212 1.18467 1.22589 0.99654 0.96833 0.85891 0.92179 0.95811 0.93462 0.92952 0.95239 0.93557 0.91809 0.91496 0.91360 0.75293 0.91515 0.83415 0.90077 0.91384 0.91912 0.90805 0.84283 0.84721 0.88944 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 7.90 37.16 0.29 -2.76 16 2 C 0.03 0.74 0.50 -155.66 -0.08 0.66 16 3 C -0.15 -3.16 7.74 37.16 0.29 -2.87 16 4 C -0.61 -16.01 8.43 -34.45 -0.29 -16.30 16 5 H 0.06 1.74 7.99 -52.48 -0.42 1.32 16 6 C 0.04 1.19 5.12 -17.82 -0.09 1.10 16 7 N -0.89 -26.22 13.70 55.43 0.76 -25.46 16 8 Si 1.05 24.67 23.57 -169.99 -4.01 20.67 16 9 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.29 -6.38 6.57 56.52 0.37 -6.01 16 11 H -0.27 -5.90 5.61 56.52 0.32 -5.59 16 12 C 0.14 2.71 4.51 -4.04 -0.02 2.69 16 13 N -0.68 -11.66 5.01 -60.73 -0.30 -11.96 16 14 C 0.50 8.17 7.75 -11.59 -0.09 8.08 16 15 O -0.52 -9.03 13.15 5.50 0.07 -8.96 16 16 C 0.51 7.58 7.74 -11.58 -0.09 7.49 16 17 O -0.52 -8.71 15.92 5.49 0.09 -8.62 16 18 N -0.58 -6.97 2.98 -173.54 -0.52 -7.49 16 19 C 0.06 0.68 6.02 -3.71 -0.02 0.65 16 20 C -0.13 -1.15 6.08 -26.61 -0.16 -1.31 16 21 C -0.11 -0.87 5.43 -26.69 -0.14 -1.02 16 22 C 0.08 0.64 3.38 -67.81 -0.23 0.41 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 N -0.84 -5.65 9.26 -4.75 -0.04 -5.69 16 25 C 0.08 0.72 5.99 -3.94 -0.02 0.69 16 26 H 0.06 1.32 4.26 -51.93 -0.22 1.10 16 27 H 0.02 0.42 7.02 -51.93 -0.36 0.06 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.52 6.99 -51.93 -0.36 0.16 16 31 H 0.05 0.99 2.14 -51.93 -0.11 0.88 16 32 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.41 6.77 5.73 -40.82 -0.23 6.53 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.15 1.93 4.22 -55.25 -0.23 1.70 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.34 2.01 9.04 -39.29 -0.36 1.65 16 43 H 0.34 1.82 8.99 -39.29 -0.35 1.46 16 44 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -29.36 341.12 -6.41 -35.77 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.93 Total: 9.07 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.66 Total: -2.47 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.11 Total: -50.60 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.16 Total: -17.58 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -4.01 Total: 20.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.36 -6.41 -35.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911016431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.217 kcal (2) G-P(sol) polarization free energy of solvation -29.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds