Wall clock time and date at job start Tue Mar 31 2020 03:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46838 * 2 1 4 4 C 1.50692 * 109.46939 * 119.99901 * 2 1 3 5 5 H 1.08006 * 119.99592 * 124.71153 * 4 2 1 6 6 C 1.37873 * 120.00458 * 304.69944 * 4 2 1 7 7 N 1.31517 * 120.00005 * 153.10911 * 6 4 2 8 8 Si 1.86798 * 120.00051 * 333.39042 * 6 4 2 9 9 H 1.48500 * 109.47203 * 179.71926 * 8 6 4 10 10 H 1.48502 * 109.47071 * 299.71494 * 8 6 4 11 11 H 1.48494 * 109.47485 * 59.71913 * 8 6 4 12 12 C 1.52999 * 109.47292 * 240.00193 * 2 1 3 13 13 N 1.46502 * 109.47124 * 59.99387 * 12 2 1 14 14 C 1.34773 * 120.00032 * 180.02562 * 13 12 2 15 15 O 1.21350 * 119.99867 * 0.02562 * 14 13 12 16 16 C 1.49449 * 120.00104 * 180.02562 * 14 13 12 17 17 O 1.21352 * 119.99841 * 7.00468 * 16 14 13 18 18 N 1.34779 * 120.00113 * 187.00500 * 16 14 13 19 19 C 1.46923 * 120.63091 * 7.07370 * 18 16 14 20 20 C 1.53190 * 108.78127 * 126.36420 * 19 18 16 21 21 C 1.53040 * 109.30799 * 54.63410 * 20 19 18 22 22 C 1.53049 * 109.53932 * 298.63453 * 21 20 19 23 23 H 1.08997 * 109.50085 * 301.41542 * 22 21 20 24 24 N 1.46900 * 109.49417 * 181.35123 * 22 21 20 25 25 C 1.46923 * 120.63129 * 186.78740 * 18 16 14 26 26 H 1.08993 * 109.46980 * 294.63458 * 1 2 3 27 27 H 1.08999 * 109.46948 * 54.63708 * 1 2 3 28 28 H 1.09001 * 109.46405 * 174.63487 * 1 2 3 29 29 H 1.09000 * 109.46756 * 184.41453 * 3 2 1 30 30 H 1.09005 * 109.46955 * 304.41415 * 3 2 1 31 31 H 1.09001 * 109.46931 * 64.41466 * 3 2 1 32 32 H 0.97001 * 120.00208 * 355.27376 * 7 6 4 33 33 H 1.08998 * 109.47280 * 179.97438 * 12 2 1 34 34 H 1.08995 * 109.47052 * 300.00242 * 12 2 1 35 35 H 0.97001 * 119.99917 * 0.02562 * 13 12 2 36 36 H 1.09005 * 109.58658 * 246.15427 * 19 18 16 37 37 H 1.09003 * 109.58445 * 6.57741 * 19 18 16 38 38 H 1.08991 * 109.49892 * 174.58640 * 20 19 18 39 39 H 1.08998 * 109.49464 * 294.65811 * 20 19 18 40 40 H 1.08993 * 109.46603 * 58.65692 * 21 20 19 41 41 H 1.08998 * 109.46043 * 178.63145 * 21 20 19 42 42 H 1.00909 * 110.99394 * 180.02562 * 24 22 21 43 43 H 1.00898 * 111.00192 * 303.95091 * 24 22 21 44 44 H 1.08998 * 109.58739 * 353.42167 * 25 18 16 45 45 H 1.09001 * 109.58739 * 113.84436 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.7145 -1.5420 1.1331 6 6 1.6213 -0.2985 2.4804 7 7 1.5918 -1.1548 3.4781 8 14 1.0988 1.4738 2.7549 9 1 0.6981 1.6577 4.1729 10 1 2.2333 2.3787 2.4398 11 1 -0.0501 1.7939 1.8703 12 6 2.0401 -0.7212 -1.2492 13 7 1.5517 -0.0306 -2.4454 14 6 1.8768 -0.4913 -3.6695 15 8 2.5738 -1.4785 -3.7808 16 6 1.3790 0.2134 -4.8898 17 8 0.7904 1.2693 -4.7829 18 7 1.5838 -0.3236 -6.1088 19 6 2.1550 -1.6701 -6.2473 20 6 1.2265 -2.5115 -7.1285 21 6 0.9956 -1.7871 -8.4567 22 6 0.3212 -0.4386 -8.1937 23 1 -0.6243 -0.5995 -7.6759 24 7 0.0708 0.2417 -9.4714 25 6 1.2344 0.4239 -7.3245 26 1 -0.3633 0.4283 0.9341 27 1 -0.3633 0.5948 -0.8381 28 1 -0.3632 -1.0232 -0.0961 29 1 3.1271 1.4435 -0.0791 30 1 1.6135 1.9787 -0.8478 31 1 1.7426 1.9330 0.9269 32 1 1.7930 -2.0905 3.3204 33 1 3.1301 -0.7208 -1.2495 34 1 1.6768 -1.7488 -1.2493 35 1 0.9942 0.7582 -2.3564 36 1 3.1388 -1.6038 -6.7121 37 1 2.2436 -2.1324 -5.2641 38 1 1.6855 -3.4817 -7.3183 39 1 0.2727 -2.6533 -6.6204 40 1 1.9524 -1.6239 -8.9525 41 1 0.3547 -2.3949 -9.0953 42 1 -0.3741 1.1354 -9.3241 43 1 0.9244 0.3457 -9.9991 44 1 0.7156 1.3430 -7.0518 45 1 2.1414 0.6646 -7.8789 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911016431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:35 Heat of formation + Delta-G solvation = -75.406825 kcal Electronic energy + Delta-G solvation = -25047.959027 eV Core-core repulsion = 21486.058402 eV Total energy + Delta-G solvation = -3561.900625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.13481 -40.23080 -38.88315 -38.49806 -35.69140 -34.93377 -33.44819 -33.18309 -29.68842 -28.40243 -28.04372 -27.04145 -26.40081 -24.11854 -23.71362 -21.80422 -21.20273 -20.71078 -19.09671 -18.45182 -18.19122 -17.33492 -16.97743 -16.84221 -16.58232 -16.16001 -15.94130 -15.66498 -15.31182 -15.16954 -14.65568 -14.51521 -14.45632 -14.23367 -14.02669 -13.99716 -13.70860 -13.68936 -13.05538 -12.90125 -12.51983 -12.45028 -12.04827 -12.00789 -11.91955 -11.79812 -11.69031 -11.57007 -10.96333 -10.67078 -10.45111 -10.35330 -10.30276 -10.11905 -9.51799 -8.75713 -6.32827 0.23839 1.19791 1.45386 1.50793 1.74023 2.01284 2.40162 2.48650 2.99982 3.21773 3.49286 3.73925 3.80697 4.01082 4.01453 4.09539 4.21146 4.24699 4.38407 4.43767 4.54189 4.68942 4.72756 4.75057 4.78939 4.80572 4.86499 4.87971 5.02845 5.03906 5.09653 5.17954 5.20556 5.33150 5.41099 5.47464 5.70972 5.86486 6.03369 6.10697 6.11346 6.17621 6.52722 6.58423 6.62065 6.86621 7.39721 8.60999 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034005 B = 0.003246 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.208917 B = 8623.836038 C = 9070.285575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.030 3.970 3 C -0.153 4.153 4 C -0.607 4.607 5 H 0.023 0.977 6 C -0.004 4.004 7 N -0.927 5.927 8 Si 1.082 2.918 9 H -0.312 1.312 10 H -0.265 1.265 11 H -0.237 1.237 12 C 0.154 3.846 13 N -0.680 5.680 14 C 0.500 3.500 15 O -0.533 6.533 16 C 0.509 3.491 17 O -0.545 6.545 18 N -0.572 5.572 19 C 0.061 3.939 20 C -0.129 4.129 21 C -0.108 4.108 22 C 0.086 3.914 23 H 0.069 0.931 24 N -0.837 5.837 25 C 0.074 3.926 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.257 0.743 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.415 0.585 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.350 0.650 43 H 0.351 0.649 44 H 0.082 0.918 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 3.355 -26.011 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 C -0.210 4.210 4 C -0.644 4.644 5 H 0.042 0.958 6 C -0.205 4.205 7 N -0.561 5.561 8 Si 0.909 3.091 9 H -0.241 1.241 10 H -0.192 1.192 11 H -0.163 1.163 12 C 0.031 3.969 13 N -0.332 5.332 14 C 0.282 3.718 15 O -0.413 6.413 16 C 0.291 3.709 17 O -0.423 6.423 18 N -0.305 5.305 19 C -0.060 4.060 20 C -0.167 4.167 21 C -0.146 4.146 22 C -0.027 4.027 23 H 0.087 0.913 24 N -0.367 5.367 25 C -0.049 4.049 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.253 0.747 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.101 0.899 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.432 3.628 -25.071 25.449 hybrid contribution 1.237 -0.530 -0.112 1.351 sum -1.194 3.098 -25.183 25.401 Atomic orbital electron populations 1.22218 0.96565 1.00471 1.00918 1.18625 0.93383 0.93172 0.91943 1.22338 1.01157 0.97192 1.00334 1.21838 1.31804 1.18141 0.92662 0.95828 1.26961 0.93451 1.07649 0.92396 1.70968 1.44522 1.04217 1.36395 0.83865 0.78465 0.72283 0.74446 1.24129 1.19160 1.16262 1.21329 0.98002 0.95298 0.82246 1.46043 1.50860 1.31495 1.04787 1.20303 0.81686 0.84654 0.85186 1.90463 1.38823 1.26499 1.85522 1.20038 0.80406 0.85375 0.85067 1.90728 1.41388 1.23683 1.86479 1.47993 1.60039 1.18220 1.04227 1.23021 0.96861 0.80421 1.05666 1.21905 0.99749 0.99548 0.95531 1.21546 1.01319 0.94751 0.97007 1.21617 0.97334 0.94432 0.89337 0.91313 1.58974 1.31616 1.28672 1.17457 1.22814 1.00772 0.96433 0.84922 0.93204 0.92389 0.94288 0.93083 0.91883 0.94035 0.93392 0.92606 0.92852 0.74653 0.90013 0.85709 0.88393 0.92484 0.90503 0.90358 0.83625 0.83520 0.89905 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 7.90 71.98 0.57 -5.18 16 2 C 0.03 1.29 0.50 -52.93 -0.03 1.27 16 3 C -0.15 -5.90 7.74 71.98 0.56 -5.34 16 4 C -0.61 -32.74 8.43 25.60 0.22 -32.52 16 5 H 0.02 1.41 7.99 -2.91 -0.02 1.38 16 6 C 0.00 -0.23 5.12 84.65 0.43 0.21 16 7 N -0.93 -56.65 13.70 21.45 0.29 -56.36 16 8 Si 1.08 48.80 23.57 68.60 1.62 50.41 16 9 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 10 H -0.26 -11.00 6.57 99.48 0.65 -10.34 16 11 H -0.24 -9.30 5.61 99.48 0.56 -8.74 16 12 C 0.15 6.03 4.51 86.38 0.39 6.42 16 13 N -0.68 -22.35 5.01 -464.42 -2.33 -24.68 16 14 C 0.50 15.87 7.75 87.27 0.68 16.55 16 15 O -0.53 -18.24 13.15 -3.25 -0.04 -18.28 16 16 C 0.51 14.43 7.74 87.27 0.68 15.11 16 17 O -0.54 -17.16 15.92 -3.25 -0.05 -17.21 16 18 N -0.57 -12.65 2.98 -821.32 -2.45 -15.10 16 19 C 0.06 1.19 6.02 86.36 0.52 1.71 16 20 C -0.13 -1.92 6.08 30.67 0.19 -1.73 16 21 C -0.11 -1.33 5.43 30.62 0.17 -1.17 16 22 C 0.09 1.20 3.38 44.85 0.15 1.36 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 N -0.84 -8.98 9.26 -168.95 -1.56 -10.54 16 25 C 0.07 1.24 5.99 86.22 0.52 1.76 16 26 H 0.05 2.08 4.26 -2.39 -0.01 2.07 16 27 H 0.06 1.90 7.02 -2.39 -0.02 1.88 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 2.00 6.99 -2.38 -0.02 1.98 16 31 H 0.04 1.65 2.14 -2.39 -0.01 1.64 16 32 H 0.26 15.89 8.73 -92.71 -0.81 15.08 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.42 12.70 5.73 -92.71 -0.53 12.17 16 36 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.13 3.15 4.22 -55.00 -0.23 2.92 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.35 3.22 9.04 -89.69 -0.81 2.41 16 43 H 0.35 2.60 8.99 -89.70 -0.81 1.79 16 44 H 0.08 1.59 7.00 -2.39 -0.02 1.58 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -64.97 341.12 -1.06 -66.04 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: -1.57 Total: 27.28 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.03 Total: -1.57 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -6.04 Total: -106.67 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.09 Total: -35.49 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.62 Total: 50.41 kcal Total: -64.97 -1.06 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911016431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.371 kcal (2) G-P(sol) polarization free energy of solvation -64.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds