Wall clock time and date at job start Tue Mar 31 2020 03:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 111.00010 * 2 1 4 4 C 1.46897 * 110.99715 * 123.95002 * 2 1 3 5 5 C 1.52998 * 109.47320 * 75.68326 * 4 2 1 6 6 H 1.09009 * 110.65466 * 298.40005 * 5 4 2 7 7 N 1.47315 * 110.49752 * 61.36446 * 5 4 2 8 8 C 1.34534 * 106.61301 * 118.82878 * 7 5 4 9 9 O 1.21538 * 123.76549 * 179.76877 * 8 7 5 10 10 N 1.33786 * 112.45914 * 359.76787 * 8 7 5 11 11 C 1.46504 * 124.17516 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47011 * 269.95699 * 11 10 8 13 13 C 1.52993 * 109.47515 * 300.00098 * 12 11 10 14 14 C 1.52998 * 109.47055 * 60.00334 * 12 11 10 15 15 C 1.53006 * 109.46622 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.46934 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99488 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00047 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47221 * 89.99813 * 20 18 16 22 22 H 1.48499 * 109.47202 * 210.00119 * 20 18 16 23 23 H 1.48501 * 109.47123 * 330.00086 * 20 18 16 24 24 C 1.34765 * 111.64776 * 0.02562 * 10 8 7 25 25 O 1.21236 * 127.16214 * 179.97438 * 24 10 8 26 26 H 1.08997 * 109.47049 * 296.05263 * 1 2 3 27 27 H 1.08997 * 109.46805 * 56.04464 * 1 2 3 28 28 H 1.08992 * 109.47403 * 176.04627 * 1 2 3 29 29 H 1.08995 * 109.47041 * 188.87081 * 3 2 1 30 30 H 1.08993 * 109.46840 * 308.87474 * 3 2 1 31 31 H 1.09005 * 109.47120 * 68.87689 * 3 2 1 32 32 H 1.09001 * 109.47622 * 315.67989 * 4 2 1 33 33 H 1.09006 * 109.47237 * 195.67955 * 4 2 1 34 34 H 0.96990 * 126.69395 * 298.62921 * 7 5 4 35 35 H 1.09000 * 109.47207 * 29.96310 * 11 10 8 36 36 H 1.09000 * 109.46528 * 149.95946 * 11 10 8 37 37 H 1.09005 * 109.47127 * 59.99573 * 13 12 11 38 38 H 1.08992 * 109.47409 * 180.02562 * 13 12 11 39 39 H 1.09009 * 109.47157 * 299.99993 * 13 12 11 40 40 H 1.09000 * 109.46887 * 59.99558 * 14 12 11 41 41 H 1.08995 * 109.46880 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.46782 * 299.99942 * 14 12 11 43 43 H 1.09001 * 109.47037 * 299.99640 * 15 12 11 44 44 H 1.09000 * 109.47394 * 60.00157 * 15 12 11 45 45 H 0.97000 * 120.00251 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8451 -2.2626 0.8581 6 1 0.7945 -2.5282 0.7403 7 7 2.6157 -2.6439 -0.3381 8 6 3.5310 -3.5439 0.0647 9 8 4.3344 -4.0700 -0.6803 10 7 3.4580 -3.7949 1.3767 11 6 4.3330 -4.7323 2.0852 12 6 3.7012 -6.1258 2.0764 13 6 2.3400 -6.0730 2.7729 14 6 3.5169 -6.5930 0.6312 15 6 4.6148 -7.1046 2.8169 16 6 3.9929 -8.4772 2.8077 17 1 3.0410 -8.6355 2.3227 18 6 4.6391 -9.5310 3.4185 19 7 5.7984 -9.3383 4.0087 20 14 3.8678 -11.2322 3.4078 21 1 4.3227 -11.9745 2.2047 22 1 4.2788 -11.9698 4.6293 23 1 2.3885 -11.1049 3.3807 24 6 2.4801 -3.0791 1.9662 25 8 2.1699 -3.0891 3.1382 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0251 -0.0709 29 1 3.0736 1.3468 -0.1585 30 1 1.5235 1.9418 -0.8000 31 1 1.7799 1.8434 0.9587 32 1 1.4392 -0.5069 2.0386 33 1 3.0493 -0.5270 1.2801 34 1 2.4864 -2.3130 -1.2406 35 1 5.3028 -4.7699 1.5890 36 1 4.4643 -4.3994 3.1147 37 1 1.6889 -5.3755 2.2458 38 1 1.8901 -7.0658 2.7670 39 1 2.4713 -5.7401 3.8025 40 1 4.4867 -6.6306 0.1351 41 1 3.0672 -7.5859 0.6250 42 1 2.8659 -5.8956 0.1042 43 1 5.5848 -7.1423 2.3210 44 1 4.7458 -6.7715 3.8464 45 1 6.2532 -10.0797 4.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924880678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:26 Heat of formation + Delta-G solvation = -44.297272 kcal Electronic energy + Delta-G solvation = -25521.385149 eV Core-core repulsion = 21960.833536 eV Total energy + Delta-G solvation = -3560.551613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38444 -38.46680 -38.10838 -36.83819 -35.79085 -33.75344 -32.10593 -29.83789 -28.03828 -27.37356 -26.76309 -26.40342 -25.18952 -23.14739 -22.75462 -21.45508 -20.46228 -18.20613 -17.75107 -17.12010 -16.46722 -16.16921 -15.90241 -15.68203 -15.20952 -14.95473 -14.83593 -14.49683 -14.04477 -13.97405 -13.51601 -13.34320 -12.97972 -12.83174 -12.66786 -12.22740 -12.13443 -12.01213 -11.82613 -11.77690 -11.00395 -10.95452 -10.91877 -10.80471 -10.65745 -10.51700 -10.23287 -10.02247 -9.72129 -9.60511 -9.45366 -9.07350 -8.86244 -8.74811 -8.30986 -5.95531 -3.95743 1.70864 2.40009 3.14703 3.20464 3.35203 3.41580 3.44384 3.47881 4.11557 4.37716 4.48897 4.50050 4.69592 4.93049 5.03539 5.09331 5.18831 5.24652 5.32932 5.40887 5.46611 5.48593 5.60348 5.68449 5.75886 5.87899 6.18965 6.26550 6.40689 6.42644 6.47554 6.49047 6.76618 6.85088 6.90563 7.11582 7.19397 7.21366 7.29334 7.52460 7.67180 7.81131 8.03256 8.32615 8.46736 9.08267 9.66918 11.16139 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033436 B = 0.003438 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.224922 B = 8141.806258 C = 8317.992751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.056 3.944 5 C 0.098 3.902 6 H 0.121 0.879 7 N -0.716 5.716 8 C 0.699 3.301 9 O -0.536 6.536 10 N -0.565 5.565 11 C 0.125 3.875 12 C -0.076 4.076 13 C -0.121 4.121 14 C -0.118 4.118 15 C 0.038 3.962 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.523 3.477 25 O -0.464 6.464 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.440 0.560 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.020 0.980 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.018 0.982 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 21.328 -7.814 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.074 4.074 5 C -0.012 4.012 6 H 0.138 0.862 7 N -0.381 5.381 8 C 0.399 3.601 9 O -0.409 6.409 10 N -0.310 5.310 11 C 0.005 3.995 12 C -0.077 4.077 13 C -0.178 4.178 14 C -0.176 4.176 15 C 0.000 4.000 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.200 1.200 24 C 0.309 3.691 25 O -0.334 6.334 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.285 0.715 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.347 20.651 -7.828 23.981 hybrid contribution -0.764 -0.448 0.389 0.967 sum -10.111 20.203 -7.439 23.785 Atomic orbital electron populations 1.22517 0.86891 1.02664 1.01001 1.61860 1.08316 1.14311 1.42371 1.22400 1.01159 0.88084 1.00638 1.22251 1.01942 0.90484 0.92678 1.21996 0.98641 0.95541 0.85037 0.86162 1.45416 1.35998 1.45639 1.11045 1.15940 0.81932 0.80060 0.82122 1.91020 1.39670 1.54426 1.55781 1.46465 1.34052 1.40935 1.09559 1.22117 0.92571 0.88356 0.96427 1.21040 0.97062 0.92565 0.96989 1.21728 0.95742 1.00980 0.99329 1.21697 1.00896 1.00348 0.94616 1.19083 0.93740 0.92449 0.94697 1.21176 1.05629 0.93197 1.34576 0.92313 1.24994 0.94981 0.98882 0.95614 1.69956 1.15125 1.31625 1.36866 0.86646 0.79565 0.84721 0.77383 1.20766 1.21353 1.19958 1.20611 0.79851 0.79811 0.88842 1.90811 1.63137 1.64162 1.15290 0.95092 0.90980 0.91087 0.91056 0.91034 0.95276 0.91760 0.89653 0.71514 0.88942 0.89236 0.96061 0.91675 0.93061 0.92896 0.91971 0.95754 0.96239 0.96339 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.40 60.06 0.56 0.66 16 2 N -0.54 -3.63 4.84 -251.26 -1.22 -4.85 16 3 C 0.03 0.14 9.52 60.07 0.57 0.71 16 4 C 0.06 0.44 4.74 -3.83 -0.02 0.43 16 5 C 0.10 0.95 3.69 -68.20 -0.25 0.70 16 6 H 0.12 0.98 7.07 -51.92 -0.37 0.62 16 7 N -0.72 -7.65 6.13 -59.19 -0.36 -8.01 16 8 C 0.70 10.51 7.05 -88.02 -0.62 9.89 16 9 O -0.54 -9.92 16.32 5.33 0.09 -9.84 16 10 N -0.57 -8.74 2.13 -120.73 -0.26 -9.00 16 11 C 0.13 2.24 4.73 -4.04 -0.02 2.22 16 12 C -0.08 -1.56 0.60 -154.51 -0.09 -1.65 16 13 C -0.12 -2.40 7.23 37.15 0.27 -2.14 16 14 C -0.12 -2.43 7.10 37.16 0.26 -2.16 16 15 C 0.04 0.95 4.04 -27.88 -0.11 0.84 16 16 C -0.51 -13.96 7.65 -34.44 -0.26 -14.23 16 17 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.52 7.24 5.99 -10.56 -0.06 7.17 16 25 O -0.46 -7.52 16.86 5.59 0.09 -7.42 16 26 H 0.03 0.16 8.09 -51.93 -0.42 -0.26 16 27 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 28 H 0.07 0.37 6.95 -51.93 -0.36 0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.33 8.03 -51.93 -0.42 -0.09 16 31 H 0.03 0.16 8.13 -51.93 -0.42 -0.27 16 32 H 0.06 0.50 7.96 -51.93 -0.41 0.08 16 33 H 0.08 0.72 7.94 -51.93 -0.41 0.31 16 34 H 0.44 3.91 8.96 -40.82 -0.37 3.55 16 35 H 0.09 1.68 7.86 -51.93 -0.41 1.27 16 36 H 0.09 1.57 8.00 -51.93 -0.42 1.15 16 37 H 0.02 0.38 6.19 -51.93 -0.32 0.05 16 38 H 0.06 1.38 6.62 -51.93 -0.34 1.04 16 39 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 40 H 0.05 1.13 8.10 -51.93 -0.42 0.71 16 41 H 0.06 1.34 6.62 -51.93 -0.34 1.00 16 42 H 0.02 0.45 6.18 -51.93 -0.32 0.13 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -32.33 354.96 -7.76 -40.09 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.30 Total: -0.94 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 0.13 Total: 3.95 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -1.10 Total: -47.94 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.18 Total: -17.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.33 -7.76 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924880678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.210 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds