Wall clock time and date at job start Tue Mar 31 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 111.00010 * 2 1 4 4 C 1.46897 * 110.99715 * 123.95002 * 2 1 3 5 5 C 1.52998 * 109.47320 * 75.68326 * 4 2 1 6 6 H 1.09009 * 110.65466 * 298.40005 * 5 4 2 7 7 N 1.47315 * 110.49752 * 61.36446 * 5 4 2 8 8 C 1.34534 * 106.61301 * 118.82878 * 7 5 4 9 9 O 1.21538 * 123.76549 * 179.76877 * 8 7 5 10 10 N 1.33786 * 112.45914 * 359.76787 * 8 7 5 11 11 C 1.46504 * 124.17516 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47011 * 269.95699 * 11 10 8 13 13 C 1.52993 * 109.47515 * 300.00098 * 12 11 10 14 14 C 1.52998 * 109.47055 * 60.00334 * 12 11 10 15 15 C 1.53006 * 109.46622 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.46934 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99488 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00047 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99906 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47221 * 89.99813 * 20 18 16 22 22 H 1.48499 * 109.47202 * 210.00119 * 20 18 16 23 23 H 1.48501 * 109.47123 * 330.00086 * 20 18 16 24 24 C 1.34765 * 111.64776 * 0.02562 * 10 8 7 25 25 O 1.21236 * 127.16214 * 179.97438 * 24 10 8 26 26 H 1.08997 * 109.47049 * 296.05263 * 1 2 3 27 27 H 1.08997 * 109.46805 * 56.04464 * 1 2 3 28 28 H 1.08992 * 109.47403 * 176.04627 * 1 2 3 29 29 H 1.08995 * 109.47041 * 188.87081 * 3 2 1 30 30 H 1.08993 * 109.46840 * 308.87474 * 3 2 1 31 31 H 1.09005 * 109.47120 * 68.87689 * 3 2 1 32 32 H 1.09001 * 109.47622 * 315.67989 * 4 2 1 33 33 H 1.09006 * 109.47237 * 195.67955 * 4 2 1 34 34 H 0.96990 * 126.69395 * 298.62921 * 7 5 4 35 35 H 1.09000 * 109.47207 * 29.96310 * 11 10 8 36 36 H 1.09000 * 109.46528 * 149.95946 * 11 10 8 37 37 H 1.09005 * 109.47127 * 59.99573 * 13 12 11 38 38 H 1.08992 * 109.47409 * 180.02562 * 13 12 11 39 39 H 1.09009 * 109.47157 * 299.99993 * 13 12 11 40 40 H 1.09000 * 109.46887 * 59.99558 * 14 12 11 41 41 H 1.08995 * 109.46880 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.46782 * 299.99942 * 14 12 11 43 43 H 1.09001 * 109.47037 * 299.99640 * 15 12 11 44 44 H 1.09000 * 109.47394 * 60.00157 * 15 12 11 45 45 H 0.97000 * 120.00251 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8451 -2.2626 0.8581 6 1 0.7945 -2.5282 0.7403 7 7 2.6157 -2.6439 -0.3381 8 6 3.5310 -3.5439 0.0647 9 8 4.3344 -4.0700 -0.6803 10 7 3.4580 -3.7949 1.3767 11 6 4.3330 -4.7323 2.0852 12 6 3.7012 -6.1258 2.0764 13 6 2.3400 -6.0730 2.7729 14 6 3.5169 -6.5930 0.6312 15 6 4.6148 -7.1046 2.8169 16 6 3.9929 -8.4772 2.8077 17 1 3.0410 -8.6355 2.3227 18 6 4.6391 -9.5310 3.4185 19 7 5.7984 -9.3383 4.0087 20 14 3.8678 -11.2322 3.4078 21 1 4.3227 -11.9745 2.2047 22 1 4.2788 -11.9698 4.6293 23 1 2.3885 -11.1049 3.3807 24 6 2.4801 -3.0791 1.9662 25 8 2.1699 -3.0891 3.1382 26 1 -0.3633 0.4513 0.9232 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0251 -0.0709 29 1 3.0736 1.3468 -0.1585 30 1 1.5235 1.9418 -0.8000 31 1 1.7799 1.8434 0.9587 32 1 1.4392 -0.5069 2.0386 33 1 3.0493 -0.5270 1.2801 34 1 2.4864 -2.3130 -1.2406 35 1 5.3028 -4.7699 1.5890 36 1 4.4643 -4.3994 3.1147 37 1 1.6889 -5.3755 2.2458 38 1 1.8901 -7.0658 2.7670 39 1 2.4713 -5.7401 3.8025 40 1 4.4867 -6.6306 0.1351 41 1 3.0672 -7.5859 0.6250 42 1 2.8659 -5.8956 0.1042 43 1 5.5848 -7.1423 2.3210 44 1 4.7458 -6.7715 3.8464 45 1 6.2532 -10.0797 4.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924880678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:25 Heat of formation + Delta-G solvation = -67.780727 kcal Electronic energy + Delta-G solvation = -25522.403468 eV Core-core repulsion = 21960.833536 eV Total energy + Delta-G solvation = -3561.569932 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.53744 -39.64988 -39.07262 -38.16908 -36.93185 -35.21801 -34.01802 -30.63170 -29.24330 -28.44190 -28.34363 -28.08919 -26.10918 -25.06956 -23.73875 -22.17313 -21.71166 -19.76351 -18.93051 -18.41722 -18.17800 -17.44273 -16.73931 -16.69028 -16.33541 -16.28218 -15.77709 -15.67915 -15.40176 -15.13807 -15.03619 -14.65895 -14.44059 -13.99051 -13.74061 -13.54537 -13.26597 -12.83851 -12.80751 -12.70665 -12.62686 -12.58063 -12.55708 -12.38006 -12.36606 -12.14583 -11.95571 -11.51336 -11.35319 -11.18864 -11.00182 -10.55695 -10.51020 -10.33475 -9.37309 -8.14479 -6.21527 0.59795 1.23464 1.41409 1.41847 1.52285 2.01792 2.21399 2.44022 2.75311 3.19697 3.24904 3.63794 3.74702 3.92559 3.97254 4.11271 4.25508 4.35042 4.42874 4.46081 4.52290 4.62341 4.67283 4.70179 4.74604 4.75669 4.81997 4.88722 5.03620 5.08087 5.12834 5.14139 5.35423 5.42087 5.43693 5.52471 5.75586 5.87766 5.90995 5.94246 6.02214 6.15972 6.30542 6.40953 6.91310 7.20444 7.45366 8.97842 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033436 B = 0.003438 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.224922 B = 8141.806258 C = 8317.992751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.062 3.938 5 C 0.112 3.888 6 H 0.150 0.850 7 N -0.691 5.691 8 C 0.696 3.304 9 O -0.575 6.575 10 N -0.571 5.571 11 C 0.134 3.866 12 C -0.071 4.071 13 C -0.108 4.108 14 C -0.105 4.105 15 C 0.045 3.955 16 C -0.517 4.517 17 H 0.064 0.936 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.956 3.044 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.263 1.263 24 C 0.520 3.480 25 O -0.488 6.488 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.452 0.548 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.042 0.958 43 H -0.008 1.008 44 H -0.005 1.005 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 22.517 -8.848 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.068 4.068 5 C 0.002 3.998 6 H 0.167 0.833 7 N -0.356 5.356 8 C 0.397 3.603 9 O -0.451 6.451 10 N -0.316 5.316 11 C 0.012 3.988 12 C -0.072 4.072 13 C -0.166 4.166 14 C -0.162 4.162 15 C 0.008 3.992 16 C -0.555 4.555 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.781 3.219 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.188 1.188 24 C 0.308 3.692 25 O -0.359 6.359 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.300 0.700 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.010 0.990 44 H 0.013 0.987 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.747 21.893 -8.889 26.388 hybrid contribution -0.038 -0.725 0.713 1.018 sum -11.785 21.168 -8.176 25.570 Atomic orbital electron populations 1.22590 0.85894 1.03202 1.01600 1.61857 1.09227 1.14823 1.41441 1.22429 1.01055 0.87569 1.01239 1.22158 1.01966 0.89076 0.93554 1.22099 0.99144 0.96067 0.82450 0.83271 1.45301 1.34481 1.43913 1.11941 1.16034 0.82210 0.80511 0.81559 1.91003 1.41428 1.56144 1.56528 1.46416 1.34333 1.40831 1.10002 1.21730 0.92585 0.87583 0.96877 1.20874 0.96701 0.93114 0.96519 1.21580 0.95309 1.00665 0.99009 1.21538 1.00272 1.00038 0.94365 1.18913 0.93440 0.93255 0.93606 1.21540 1.05754 0.94192 1.33989 0.91769 1.25875 0.95464 1.03102 0.95365 1.70091 1.16628 1.32873 1.37956 0.85579 0.79140 0.79711 0.77431 1.20187 1.21085 1.18755 1.21243 0.79153 0.79522 0.89331 1.90806 1.63663 1.64842 1.16588 0.94883 0.89985 0.90654 0.91435 0.89868 0.95043 0.91088 0.90242 0.70046 0.89691 0.89126 0.93838 0.93021 0.93891 0.94409 0.93214 0.93921 0.98982 0.98671 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.40 127.69 1.20 1.31 16 2 N -0.55 -5.62 4.84 -948.86 -4.59 -10.21 16 3 C 0.02 0.21 9.52 127.69 1.22 1.43 16 4 C 0.06 0.81 4.74 86.30 0.41 1.22 16 5 C 0.11 1.83 3.69 44.37 0.16 2.00 16 6 H 0.15 1.78 7.07 -2.38 -0.02 1.76 16 7 N -0.69 -12.97 6.13 -459.59 -2.82 -15.79 16 8 C 0.70 20.02 7.05 179.44 1.27 21.28 16 9 O -0.57 -21.02 16.32 -3.84 -0.06 -21.08 16 10 N -0.57 -17.12 2.13 -773.12 -1.65 -18.77 16 11 C 0.13 4.85 4.73 86.38 0.41 5.26 16 12 C -0.07 -2.97 0.60 -52.18 -0.03 -3.00 16 13 C -0.11 -4.27 7.23 71.98 0.52 -3.75 16 14 C -0.10 -4.30 7.10 71.98 0.51 -3.79 16 15 C 0.05 2.38 4.04 29.85 0.12 2.50 16 16 C -0.52 -28.89 7.65 25.60 0.20 -28.70 16 17 H 0.06 3.46 5.68 -2.91 -0.02 3.44 16 18 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 19 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 20 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 24 C 0.52 13.42 5.99 87.94 0.53 13.95 16 25 O -0.49 -15.08 16.86 -2.90 -0.05 -15.13 16 26 H 0.03 0.24 8.09 -2.39 -0.02 0.22 16 27 H 0.08 0.47 8.07 -2.39 -0.02 0.45 16 28 H 0.07 0.50 6.95 -2.39 -0.02 0.48 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.53 8.03 -2.39 -0.02 0.51 16 31 H 0.03 0.26 8.13 -2.38 -0.02 0.24 16 32 H 0.07 0.89 7.96 -2.39 -0.02 0.87 16 33 H 0.08 1.17 7.94 -2.38 -0.02 1.15 16 34 H 0.45 6.67 8.96 -92.72 -0.83 5.84 16 35 H 0.08 3.20 7.86 -2.39 -0.02 3.18 16 36 H 0.09 3.24 8.00 -2.39 -0.02 3.22 16 37 H 0.04 1.49 6.19 -2.38 -0.01 1.48 16 38 H 0.05 2.15 6.62 -2.39 -0.02 2.14 16 39 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 41 H 0.05 2.13 6.62 -2.39 -0.02 2.12 16 42 H 0.04 1.57 6.18 -2.39 -0.01 1.55 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -70.55 354.96 0.27 -70.28 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.16 Total: 10.63 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.97 Total: 10.12 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -8.77 Total: -101.72 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.11 Total: -36.21 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.55 0.27 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924880678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.503 kcal (2) G-P(sol) polarization free energy of solvation -70.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds