Wall clock time and date at job start Tue Mar 31 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47969 * 110.99668 * 2 1 4 4 C 1.53944 * 86.17752 * 137.58016 * 3 2 1 5 5 C 1.47958 * 110.99855 * 99.35561 * 2 1 3 6 6 H 1.09007 * 113.86201 * 336.74885 * 5 2 1 7 7 C 1.53000 * 113.75894 * 108.09985 * 5 2 1 8 8 N 1.46492 * 109.47396 * 281.56522 * 7 5 2 9 9 C 1.34782 * 120.00370 * 179.97438 * 8 7 5 10 10 O 1.21353 * 119.99709 * 359.97438 * 9 8 7 11 11 C 1.49452 * 120.00235 * 179.97438 * 9 8 7 12 12 O 1.21344 * 119.99850 * 0.02562 * 11 9 8 13 13 N 1.34773 * 119.99780 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99662 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.46780 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47121 * 60.00529 * 15 14 13 17 17 C 1.52996 * 109.47414 * 300.00095 * 15 14 13 18 18 C 1.50697 * 109.46924 * 179.97438 * 15 14 13 19 19 H 1.08001 * 120.00556 * 2.08123 * 18 15 14 20 20 C 1.37878 * 120.00333 * 182.34926 * 18 15 14 21 21 N 1.31519 * 119.99805 * 353.19399 * 20 18 15 22 22 Si 1.86803 * 120.00590 * 173.19182 * 20 18 15 23 23 H 1.48507 * 109.46744 * 94.99013 * 22 20 18 24 24 H 1.48496 * 109.47193 * 214.99053 * 22 20 18 25 25 H 1.48497 * 109.46698 * 334.99290 * 22 20 18 26 26 H 1.08998 * 109.47455 * 320.64048 * 1 2 3 27 27 H 1.08998 * 109.47380 * 80.63988 * 1 2 3 28 28 H 1.09000 * 109.47115 * 200.64081 * 1 2 3 29 29 H 1.08998 * 113.75586 * 23.26176 * 3 2 1 30 30 H 1.08998 * 113.85559 * 251.91385 * 3 2 1 31 31 H 1.08991 * 113.72841 * 221.91859 * 4 3 2 32 32 H 1.09004 * 113.82416 * 90.65079 * 4 3 2 33 33 H 1.09006 * 109.47202 * 161.55776 * 7 5 2 34 34 H 1.09004 * 109.46773 * 41.56174 * 7 5 2 35 35 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 36 36 H 0.96999 * 120.00061 * 0.02562 * 13 11 9 37 37 H 1.09000 * 109.46996 * 60.00343 * 14 13 11 38 38 H 1.08995 * 109.47500 * 300.00281 * 14 13 11 39 39 H 1.09001 * 109.46903 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.46580 * 299.99471 * 16 15 14 41 41 H 1.08995 * 109.47092 * 59.99706 * 16 15 14 42 42 H 1.08998 * 109.47284 * 294.13357 * 17 15 14 43 43 H 1.09003 * 109.47265 * 54.13381 * 17 15 14 44 44 H 1.09000 * 109.47286 * 174.13077 * 17 15 14 45 45 H 0.96999 * 120.00151 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 1.0361 5 6 1.9992 -0.2245 1.3629 6 1 1.3021 0.0435 2.1570 7 6 2.6262 -1.6061 1.5606 8 7 1.5672 -2.6009 1.7471 9 6 1.8857 -3.8963 1.9398 10 8 3.0498 -4.2386 1.9583 11 6 0.8053 -4.9111 2.1307 12 8 -0.3587 -4.5689 2.1118 13 7 1.1239 -6.2065 2.3228 14 6 0.0648 -7.2013 2.5094 15 6 0.6919 -8.5831 2.7051 16 6 1.5956 -8.5629 3.9395 17 6 1.5212 -8.9463 1.4717 18 6 -0.3975 -9.6064 2.8976 19 1 -1.4342 -9.3074 2.8485 20 6 -0.0710 -10.9235 3.1420 21 7 1.1833 -11.3133 3.0748 22 14 -1.4099 -12.1542 3.5687 23 1 -1.8443 -12.8601 2.3365 24 1 -0.8822 -13.1412 4.5447 25 1 -2.5675 -11.4396 4.1640 26 1 -0.3634 0.7945 0.6517 27 1 -0.3634 0.1671 -1.0139 28 1 -0.3633 -0.9617 0.3623 29 1 1.3009 2.1198 0.3940 30 1 2.4461 1.6821 -0.9476 31 1 3.1919 1.5759 1.8568 32 1 3.9458 0.5051 0.5969 33 1 3.2695 -1.5907 2.4405 34 1 3.2178 -1.8655 0.6826 35 1 0.6367 -2.3274 1.7320 36 1 2.0544 -6.4801 2.3376 37 1 -0.5788 -7.2161 1.6298 38 1 -0.5263 -6.9424 3.3878 39 1 2.0420 -9.5474 4.0791 40 1 2.3836 -7.8227 3.8006 41 1 1.0048 -8.3042 4.8181 42 1 0.8616 -9.0629 0.6118 43 1 2.2417 -8.1531 1.2720 44 1 2.0511 -9.8814 1.6526 45 1 1.4131 -12.2400 3.2464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930822021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:45 Heat of formation + Delta-G solvation = -40.773758 kcal Electronic energy + Delta-G solvation = -24212.534580 eV Core-core repulsion = 20652.135758 eV Total energy + Delta-G solvation = -3560.398822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.70096 -40.02536 -38.25306 -36.46618 -34.89766 -33.24890 -31.14698 -30.88164 -29.01599 -26.26029 -25.71609 -25.27661 -24.51320 -24.12736 -22.46060 -20.54132 -19.79235 -18.95841 -18.23499 -16.72062 -16.53772 -16.00409 -15.74471 -15.63319 -15.35915 -14.92534 -14.77390 -14.36572 -14.14291 -13.52462 -13.48164 -13.26275 -12.91888 -12.72323 -12.32139 -12.20903 -11.90867 -11.87250 -11.49368 -11.42022 -11.24142 -11.19629 -11.13879 -10.87639 -10.68517 -10.38923 -10.20091 -9.63648 -9.53186 -9.30810 -9.26391 -9.17816 -8.80677 -8.58269 -8.34687 -6.02735 -4.11850 1.69393 2.58742 3.28089 3.35822 3.38925 3.40405 3.51466 3.90320 4.09187 4.32271 4.40145 4.64100 4.69067 4.80929 4.87994 4.91626 5.04131 5.22561 5.24317 5.28357 5.42028 5.52260 5.56912 5.73369 5.92853 6.12557 6.16893 6.24629 6.48017 6.59544 6.64863 6.83437 6.86350 6.95124 7.00851 7.12592 7.34632 7.56164 7.68410 7.73796 7.99156 7.99863 8.13453 8.33403 8.42708 8.87932 9.53437 10.99368 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039514 B = 0.002606 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.446785 B =10743.227998 C =11137.135692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.477 5.477 3 C 0.000 4.000 4 C -0.135 4.135 5 C 0.013 3.987 6 H 0.087 0.913 7 C 0.138 3.862 8 N -0.703 5.703 9 C 0.507 3.493 10 O -0.521 6.521 11 C 0.496 3.504 12 O -0.537 6.537 13 N -0.680 5.680 14 C 0.128 3.872 15 C 0.056 3.944 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.509 4.509 19 H 0.058 0.942 20 C 0.068 3.932 21 N -0.883 5.883 22 Si 0.893 3.107 23 H -0.282 1.282 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.409 0.591 36 H 0.411 0.589 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.010 0.990 41 H 0.028 0.972 42 H 0.030 0.970 43 H 0.007 0.993 44 H 0.086 0.914 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 23.208 -3.286 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 N -0.200 5.200 3 C -0.129 4.129 4 C -0.173 4.173 5 C -0.097 4.097 6 H 0.105 0.895 7 C 0.014 3.986 8 N -0.357 5.357 9 C 0.288 3.712 10 O -0.396 6.396 11 C 0.275 3.725 12 O -0.416 6.416 13 N -0.332 5.332 14 C 0.006 3.994 15 C 0.055 3.945 16 C -0.191 4.191 17 C -0.190 4.190 18 C -0.547 4.547 19 H 0.077 0.923 20 C -0.134 4.134 21 N -0.521 5.521 22 Si 0.721 3.279 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.245 0.755 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.029 0.971 41 H 0.047 0.953 42 H 0.049 0.951 43 H 0.026 0.974 44 H 0.104 0.896 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.289 22.537 -3.791 23.089 hybrid contribution -1.188 -0.152 0.822 1.452 sum 2.101 22.385 -2.970 22.678 Atomic orbital electron populations 1.22921 0.89228 1.01718 1.02430 1.68549 1.09488 1.18514 1.23442 1.23905 0.97289 0.91206 1.00491 1.23322 0.98231 0.96723 0.99016 1.23776 0.98005 0.95404 0.92490 0.89469 1.21366 0.89784 0.84895 1.02562 1.45696 1.11258 1.06690 1.72078 1.20461 0.89419 0.83698 0.77582 1.90754 1.19932 1.80177 1.48729 1.19974 0.88602 0.84286 0.79615 1.90712 1.19605 1.80358 1.50909 1.46227 1.12945 1.06153 1.67846 1.21927 0.88606 0.88236 1.00604 1.18380 0.94415 0.88691 0.92999 1.21835 0.97661 1.01766 0.97841 1.21880 0.98364 1.01234 0.97476 1.20940 0.92159 0.92311 1.49313 0.92348 1.24883 0.95436 0.98130 0.94971 1.69847 1.16575 1.16778 1.48917 0.86567 0.82067 0.81020 0.78277 1.20808 1.21193 1.19851 0.94559 0.90817 0.91024 0.91124 0.89062 0.90459 0.88484 0.90347 0.89977 0.75497 0.75165 0.92015 0.92002 0.89772 0.97097 0.95282 0.95124 0.97424 0.89561 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.48 -3.94 6.36 -238.93 -1.52 -5.46 16 3 C 0.00 0.00 7.97 -2.76 -0.02 -0.02 16 4 C -0.13 -0.76 7.85 -25.79 -0.20 -0.96 16 5 C 0.01 0.10 3.35 -66.66 -0.22 -0.13 16 6 H 0.09 0.58 7.93 -51.92 -0.41 0.17 16 7 C 0.14 1.35 5.71 -4.05 -0.02 1.33 16 8 N -0.70 -8.57 5.55 -60.73 -0.34 -8.91 16 9 C 0.51 7.99 7.89 -11.58 -0.09 7.89 16 10 O -0.52 -9.20 16.48 5.49 0.09 -9.11 16 11 C 0.50 8.87 7.89 -11.59 -0.09 8.78 16 12 O -0.54 -10.41 16.48 5.50 0.09 -10.32 16 13 N -0.68 -12.85 4.90 -60.73 -0.30 -13.15 16 14 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -3.06 8.05 37.16 0.30 -2.76 16 17 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 18 C -0.51 -13.27 8.01 -34.44 -0.28 -13.55 16 19 H 0.06 1.52 7.75 -52.49 -0.41 1.12 16 20 C 0.07 1.78 5.12 -17.82 -0.09 1.69 16 21 N -0.88 -23.70 9.47 55.43 0.53 -23.17 16 22 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.04 0.23 7.62 -51.93 -0.40 -0.17 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.60 7.30 -51.93 -0.38 0.22 16 29 H 0.07 0.35 7.62 -51.93 -0.40 -0.04 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.41 4.63 7.11 -40.82 -0.29 4.34 16 36 H 0.41 7.65 5.63 -40.82 -0.23 7.42 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 2.12 6.16 -51.93 -0.32 1.80 16 40 H 0.01 0.21 6.86 -51.93 -0.36 -0.15 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.01 0.14 6.72 -51.93 -0.35 -0.20 16 44 H 0.09 2.19 6.20 -51.93 -0.32 1.86 16 45 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -29.06 361.24 -8.18 -37.24 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.22 Total: 7.88 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 0.06 Total: 3.91 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -1.63 Total: -50.69 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.18 Total: -19.43 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.06 -8.18 -37.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930822021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.535 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds