Wall clock time and date at job start Tue Mar 31 2020 03:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48501 * 109.46985 * 269.99734 * 3 2 1 5 5 H 1.48499 * 109.47183 * 30.00080 * 3 2 1 6 6 H 1.48501 * 109.46900 * 149.99922 * 3 2 1 7 7 C 1.38809 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00082 * 0.02562 * 7 2 1 9 9 N 1.36944 * 119.99729 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99745 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.45754 * 205.00338 * 10 9 7 12 12 C 1.53197 * 109.31344 * 178.63366 * 11 10 9 13 13 N 1.46923 * 108.77645 * 54.63033 * 12 11 10 14 14 C 1.34774 * 120.62680 * 126.37248 * 13 12 11 15 15 O 1.21271 * 120.00320 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99509 * 180.02562 * 14 13 12 17 17 N 1.46901 * 109.46918 * 173.90862 * 16 14 13 18 18 C 1.47016 * 110.99789 * 169.95552 * 17 16 14 19 19 C 1.53098 * 109.25508 * 182.34689 * 18 17 16 20 20 O 1.43009 * 109.29852 * 303.22343 * 19 18 17 21 21 C 1.43014 * 113.74175 * 58.64386 * 20 19 18 22 22 C 1.47022 * 110.99959 * 293.64047 * 17 16 14 23 23 C 1.46928 * 118.73791 * 306.64758 * 13 12 11 24 24 C 1.52760 * 109.00853 * 53.30836 * 23 13 12 25 25 H 0.97008 * 119.99546 * 0.02562 * 1 2 3 26 26 H 0.96992 * 119.99780 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46438 * 324.97557 * 10 9 7 28 28 H 1.09000 * 109.50251 * 58.67856 * 11 10 9 29 29 H 1.09000 * 109.49722 * 298.58111 * 11 10 9 30 30 H 1.09007 * 109.58068 * 294.84747 * 12 11 10 31 31 H 1.08998 * 109.70773 * 174.49340 * 12 11 10 32 32 H 1.08997 * 109.47001 * 53.91172 * 16 14 13 33 33 H 1.08996 * 109.47418 * 293.90631 * 16 14 13 34 34 H 1.08999 * 109.46887 * 62.44197 * 18 17 16 35 35 H 1.08993 * 109.54779 * 302.30477 * 18 17 16 36 36 H 1.09002 * 109.50839 * 183.26392 * 19 18 17 37 37 H 1.09007 * 109.50529 * 63.17774 * 19 18 17 38 38 H 1.09005 * 109.50228 * 61.26452 * 21 20 19 39 39 H 1.08997 * 109.51202 * 181.35121 * 21 20 19 40 40 H 1.09000 * 109.50817 * 57.67316 * 22 17 16 41 41 H 1.08997 * 109.50191 * 297.53746 * 22 17 16 42 42 H 1.09007 * 109.58615 * 173.14342 * 23 13 12 43 43 H 1.09001 * 109.58722 * 293.56369 * 23 13 12 44 44 H 1.09001 * 109.56341 * 185.54481 * 24 23 13 45 45 H 1.09008 * 109.35865 * 65.50246 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.4997 -2.2586 0.6093 12 6 6.2499 -3.5940 0.6390 13 7 6.2664 -4.1574 -0.7178 14 6 7.4284 -4.5180 -1.2974 15 8 8.4738 -4.3782 -0.6988 16 6 7.4289 -5.0940 -2.6901 17 7 8.8139 -5.2676 -3.1477 18 6 8.8631 -6.0424 -4.3962 19 6 10.3239 -6.2493 -4.8048 20 8 10.9642 -4.9767 -4.9308 21 6 10.9355 -4.1966 -3.7326 22 6 9.4808 -3.9679 -3.3136 23 6 4.9926 -4.3145 -1.4330 24 6 4.2561 -2.9762 -1.4374 25 1 -0.4850 0.8402 -0.0004 26 1 3.8646 -0.3622 -0.0004 27 1 3.5650 -3.2062 0.5902 28 1 5.3966 -1.8766 1.6250 29 1 6.0564 -1.5420 0.0054 30 1 5.7428 -4.2829 1.3146 31 1 7.2725 -3.4336 0.9805 32 1 6.9059 -4.4155 -3.3640 33 1 6.9245 -6.0602 -2.6839 34 1 8.3388 -5.4987 -5.1821 35 1 8.3873 -7.0110 -4.2432 36 1 10.3641 -6.7730 -5.7599 37 1 10.8345 -6.8399 -4.0441 38 1 11.4634 -4.7272 -2.9401 39 1 11.4186 -3.2361 -3.9118 40 1 9.4553 -3.4226 -2.3701 41 1 8.9671 -3.3907 -4.0824 42 1 5.1858 -4.6270 -2.4593 43 1 4.3810 -5.0634 -0.9299 44 1 3.2677 -3.1049 -1.8786 45 1 4.8245 -2.2528 -2.0221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991280174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:04 Heat of formation + Delta-G solvation = -50.816814 kcal Electronic energy + Delta-G solvation = -24865.909270 eV Core-core repulsion = 21305.074948 eV Total energy + Delta-G solvation = -3560.834322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.49205 -39.40375 -37.55644 -35.68674 -34.67040 -32.19869 -31.44863 -31.17949 -30.02233 -29.10092 -25.77655 -24.50215 -24.29164 -23.03529 -22.19176 -20.79577 -20.35035 -19.00843 -17.65423 -17.27816 -16.73898 -16.36759 -15.82747 -15.75125 -15.32491 -14.96037 -14.80487 -14.56182 -14.15963 -13.99830 -13.74017 -13.63663 -13.17124 -13.06422 -12.63485 -12.43781 -12.29435 -12.14549 -11.94536 -11.65601 -11.54975 -11.11557 -11.06953 -10.95572 -10.82616 -10.60142 -10.30156 -10.10605 -9.94835 -9.65063 -9.64888 -8.99580 -8.68149 -8.56398 -7.34966 -5.83594 -3.19737 2.59420 2.83480 3.32845 3.36195 3.41278 3.49833 3.64546 4.36413 4.53354 4.58468 4.68493 4.81876 4.85073 4.90722 4.98520 5.02978 5.09972 5.13504 5.19670 5.25811 5.28301 5.39102 5.42119 5.47553 5.50962 5.58427 5.64716 5.69844 5.79418 5.87335 6.03388 6.10170 6.20501 6.31592 6.42218 6.55752 6.61877 6.73540 6.86429 6.86723 7.42250 7.91683 8.18545 8.35524 9.13521 9.86379 10.05916 11.34541 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.003045 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.002199 B = 9192.431165 C = 9342.763263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.184 3.816 11 C -0.142 4.142 12 C 0.118 3.882 13 N -0.608 5.608 14 C 0.516 3.484 15 O -0.532 6.532 16 C 0.037 3.963 17 N -0.520 5.520 18 C 0.017 3.983 19 C 0.065 3.935 20 O -0.388 6.388 21 C 0.067 3.933 22 C 0.014 3.986 23 C 0.107 3.893 24 C -0.152 4.152 25 H 0.260 0.740 26 H 0.361 0.639 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.396 -12.933 -7.709 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.181 4.181 12 C -0.005 4.005 13 N -0.343 5.343 14 C 0.303 3.697 15 O -0.408 6.408 16 C -0.094 4.094 17 N -0.245 5.245 18 C -0.111 4.111 19 C -0.012 4.012 20 O -0.307 6.307 21 C -0.010 4.010 22 C -0.113 4.113 23 C -0.016 4.016 24 C -0.193 4.193 25 H 0.070 0.930 26 H 0.194 0.806 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.029 -13.109 -7.178 24.197 hybrid contribution -0.384 1.656 -0.453 1.759 sum 18.645 -11.453 -7.631 23.174 Atomic orbital electron populations 1.69704 1.05113 1.25897 1.57329 1.24679 0.95225 0.97242 1.01914 0.86557 0.79231 0.84998 0.77766 1.21135 1.21710 1.20321 1.19060 0.80517 0.94684 1.43264 0.89163 1.42801 1.04031 1.01973 1.90217 1.20129 0.90241 0.89428 0.92788 1.22245 0.97159 0.96512 1.02207 1.21576 1.01943 0.94588 0.82382 1.48203 1.06623 1.62525 1.16914 1.20362 0.83371 0.78074 0.87891 1.90652 1.30980 1.54449 1.64727 1.22037 0.90663 1.02334 0.94377 1.61851 1.14753 1.18193 1.29727 1.22829 0.98557 0.99155 0.90550 1.22636 0.90970 0.85746 1.01840 1.87971 1.77993 1.29537 1.35192 1.22650 0.95178 0.96057 0.87140 1.22921 0.95527 0.90480 1.02410 1.21787 0.84223 0.99271 0.96350 1.22567 1.00526 0.94830 1.01392 0.93010 0.80646 0.92477 0.90461 0.92048 0.91391 0.89296 0.91673 0.87633 0.93750 0.89422 0.88408 0.92157 0.91981 0.88433 0.88060 0.94279 0.90614 0.91086 0.90043 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.71 27.74 -169.99 -4.71 17.00 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 7 C -0.25 -6.63 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.75 -16.83 4.92 -53.39 -0.26 -17.10 16 10 C 0.18 3.23 2.73 -67.89 -0.19 3.05 16 11 C -0.14 -2.13 5.55 -26.61 -0.15 -2.27 16 12 C 0.12 1.55 6.44 -3.71 -0.02 1.53 16 13 N -0.61 -7.70 2.98 -173.02 -0.52 -8.22 16 14 C 0.52 6.78 7.28 -10.98 -0.08 6.70 16 15 O -0.53 -8.60 14.08 5.57 0.08 -8.52 16 16 C 0.04 0.37 3.89 -4.97 -0.02 0.35 16 17 N -0.52 -5.60 4.42 -235.74 -1.04 -6.64 16 18 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 19 C 0.07 0.54 7.01 37.21 0.26 0.80 16 20 O -0.39 -4.16 10.83 -35.23 -0.38 -4.54 16 21 C 0.07 0.67 7.01 37.21 0.26 0.93 16 22 C 0.01 0.16 5.30 -3.71 -0.02 0.14 16 23 C 0.11 1.23 6.31 -3.93 -0.02 1.21 16 24 C -0.15 -2.31 5.64 -26.84 -0.15 -2.46 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 27 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 32 H 0.07 0.62 7.34 -51.93 -0.38 0.24 16 33 H 0.11 0.87 8.03 -51.93 -0.42 0.45 16 34 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.30 6.10 -51.93 -0.32 0.98 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.70 5.88 -51.92 -0.31 0.39 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -32.77 348.62 -8.73 -41.51 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.52 Total: 5.80 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.40 Total: 3.36 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -1.05 Total: -59.85 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.30 Total: -13.06 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.77 -8.73 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991280174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.311 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds