Wall clock time and date at job start Tue Mar 31 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48501 * 109.46985 * 269.99734 * 3 2 1 5 5 H 1.48499 * 109.47183 * 30.00080 * 3 2 1 6 6 H 1.48501 * 109.46900 * 149.99922 * 3 2 1 7 7 C 1.38809 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00082 * 0.02562 * 7 2 1 9 9 N 1.36944 * 119.99729 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99745 * 180.02562 * 9 7 2 11 11 C 1.53035 * 109.45754 * 205.00338 * 10 9 7 12 12 C 1.53197 * 109.31344 * 178.63366 * 11 10 9 13 13 N 1.46923 * 108.77645 * 54.63033 * 12 11 10 14 14 C 1.34774 * 120.62680 * 126.37248 * 13 12 11 15 15 O 1.21271 * 120.00320 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99509 * 180.02562 * 14 13 12 17 17 N 1.46901 * 109.46918 * 173.90862 * 16 14 13 18 18 C 1.47016 * 110.99789 * 169.95552 * 17 16 14 19 19 C 1.53098 * 109.25508 * 182.34689 * 18 17 16 20 20 O 1.43009 * 109.29852 * 303.22343 * 19 18 17 21 21 C 1.43014 * 113.74175 * 58.64386 * 20 19 18 22 22 C 1.47022 * 110.99959 * 293.64047 * 17 16 14 23 23 C 1.46928 * 118.73791 * 306.64758 * 13 12 11 24 24 C 1.52760 * 109.00853 * 53.30836 * 23 13 12 25 25 H 0.97008 * 119.99546 * 0.02562 * 1 2 3 26 26 H 0.96992 * 119.99780 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46438 * 324.97557 * 10 9 7 28 28 H 1.09000 * 109.50251 * 58.67856 * 11 10 9 29 29 H 1.09000 * 109.49722 * 298.58111 * 11 10 9 30 30 H 1.09007 * 109.58068 * 294.84747 * 12 11 10 31 31 H 1.08998 * 109.70773 * 174.49340 * 12 11 10 32 32 H 1.08997 * 109.47001 * 53.91172 * 16 14 13 33 33 H 1.08996 * 109.47418 * 293.90631 * 16 14 13 34 34 H 1.08999 * 109.46887 * 62.44197 * 18 17 16 35 35 H 1.08993 * 109.54779 * 302.30477 * 18 17 16 36 36 H 1.09002 * 109.50839 * 183.26392 * 19 18 17 37 37 H 1.09007 * 109.50529 * 63.17774 * 19 18 17 38 38 H 1.09005 * 109.50228 * 61.26452 * 21 20 19 39 39 H 1.08997 * 109.51202 * 181.35121 * 21 20 19 40 40 H 1.09000 * 109.50817 * 57.67316 * 22 17 16 41 41 H 1.08997 * 109.50191 * 297.53746 * 22 17 16 42 42 H 1.09007 * 109.58615 * 173.14342 * 23 13 12 43 43 H 1.09001 * 109.58722 * 293.56369 * 23 13 12 44 44 H 1.09001 * 109.56341 * 185.54481 * 24 23 13 45 45 H 1.09008 * 109.35865 * 65.50246 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4710 0.0000 11 6 5.4997 -2.2586 0.6093 12 6 6.2499 -3.5940 0.6390 13 7 6.2664 -4.1574 -0.7178 14 6 7.4284 -4.5180 -1.2974 15 8 8.4738 -4.3782 -0.6988 16 6 7.4289 -5.0940 -2.6901 17 7 8.8139 -5.2676 -3.1477 18 6 8.8631 -6.0424 -4.3962 19 6 10.3239 -6.2493 -4.8048 20 8 10.9642 -4.9767 -4.9308 21 6 10.9355 -4.1966 -3.7326 22 6 9.4808 -3.9679 -3.3136 23 6 4.9926 -4.3145 -1.4330 24 6 4.2561 -2.9762 -1.4374 25 1 -0.4850 0.8402 -0.0004 26 1 3.8646 -0.3622 -0.0004 27 1 3.5650 -3.2062 0.5902 28 1 5.3966 -1.8766 1.6250 29 1 6.0564 -1.5420 0.0054 30 1 5.7428 -4.2829 1.3146 31 1 7.2725 -3.4336 0.9805 32 1 6.9059 -4.4155 -3.3640 33 1 6.9245 -6.0602 -2.6839 34 1 8.3388 -5.4987 -5.1821 35 1 8.3873 -7.0110 -4.2432 36 1 10.3641 -6.7730 -5.7599 37 1 10.8345 -6.8399 -4.0441 38 1 11.4634 -4.7272 -2.9401 39 1 11.4186 -3.2361 -3.9118 40 1 9.4553 -3.4226 -2.3701 41 1 8.9671 -3.3907 -4.0824 42 1 5.1858 -4.6270 -2.4593 43 1 4.3810 -5.0634 -0.9299 44 1 3.2677 -3.1049 -1.8786 45 1 4.8245 -2.2528 -2.0221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991280174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:03 Heat of formation + Delta-G solvation = -75.364960 kcal Electronic energy + Delta-G solvation = -24866.973758 eV Core-core repulsion = 21305.074948 eV Total energy + Delta-G solvation = -3561.898810 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.45271 -40.25612 -38.77447 -36.53701 -36.20496 -33.96410 -32.41374 -32.13620 -31.55428 -30.04538 -26.93048 -25.75142 -25.01048 -24.29993 -23.65831 -21.83519 -21.39088 -20.24489 -19.39640 -18.33327 -17.54953 -17.15239 -16.78209 -16.68821 -16.67108 -16.02831 -15.89584 -15.72551 -15.42487 -15.09970 -14.94545 -14.71380 -14.64831 -14.24581 -14.05955 -13.53181 -13.30149 -13.20779 -13.05302 -12.95199 -12.67002 -12.38407 -12.28570 -12.17537 -12.06635 -12.02757 -11.79502 -11.55108 -11.34484 -11.02345 -10.89470 -10.55836 -9.67159 -9.42279 -9.30548 -8.02239 -5.35096 1.37469 1.39042 1.46643 1.60626 1.89862 2.47824 2.73080 2.95684 3.29355 3.45122 3.54342 3.86262 3.92887 3.96483 4.03003 4.09704 4.16233 4.19195 4.23720 4.32057 4.36281 4.39463 4.45008 4.59843 4.61693 4.72141 4.73460 4.78723 4.81453 4.84782 4.86979 4.99505 5.00392 5.04515 5.26109 5.45810 5.59449 5.76726 5.78227 5.89964 6.16013 6.22179 6.43323 7.08006 7.18858 7.84899 8.02609 9.19124 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.003045 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.002199 B = 9192.431165 C = 9342.763263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.255 1.255 7 C -0.223 4.223 8 H 0.062 0.938 9 N -0.754 5.754 10 C 0.175 3.825 11 C -0.131 4.131 12 C 0.123 3.877 13 N -0.609 5.609 14 C 0.513 3.487 15 O -0.566 6.566 16 C 0.040 3.960 17 N -0.536 5.536 18 C 0.019 3.981 19 C 0.059 3.941 20 O -0.404 6.404 21 C 0.069 3.931 22 C 0.019 3.981 23 C 0.115 3.885 24 C -0.143 4.143 25 H 0.256 0.744 26 H 0.362 0.638 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.063 -14.042 -8.744 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.778 3.222 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.179 1.179 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.396 5.396 10 C 0.068 3.932 11 C -0.170 4.170 12 C 0.000 4.000 13 N -0.342 5.342 14 C 0.302 3.698 15 O -0.445 6.445 16 C -0.091 4.091 17 N -0.262 5.262 18 C -0.109 4.109 19 C -0.017 4.017 20 O -0.323 6.323 21 C -0.008 4.008 22 C -0.110 4.110 23 C -0.007 4.007 24 C -0.184 4.184 25 H 0.065 0.935 26 H 0.195 0.805 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.150 0.850 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.745 -14.265 -8.224 26.486 hybrid contribution -0.884 1.877 -0.120 2.079 sum 19.861 -12.388 -8.345 24.851 Atomic orbital electron populations 1.69875 1.07019 1.26504 1.60065 1.25441 0.96015 1.00999 1.03101 0.85476 0.78613 0.80186 0.77879 1.20763 1.22558 1.17925 1.19034 0.82476 0.93420 1.40473 0.91959 1.42862 1.02532 1.03951 1.90267 1.20404 0.91017 0.87257 0.94567 1.22102 0.95414 0.97640 1.01798 1.21478 1.01442 0.93821 0.83276 1.48259 1.07041 1.62260 1.16667 1.20924 0.82690 0.77399 0.88789 1.90643 1.32154 1.55862 1.65795 1.22094 0.90904 1.03712 0.92352 1.61846 1.15091 1.18017 1.31209 1.22910 0.98706 0.99773 0.89473 1.22852 0.90852 0.84897 1.03124 1.87950 1.78437 1.30555 1.35362 1.22643 0.94648 0.96598 0.86926 1.22805 0.96273 0.90767 1.01114 1.21799 0.83421 0.97132 0.98391 1.22362 1.00208 0.96910 0.98939 0.93466 0.80486 0.93197 0.90479 0.92477 0.90086 0.89716 0.90482 0.84985 0.93502 0.87245 0.86108 0.92357 0.92663 0.87309 0.90227 0.94393 0.87417 0.89691 0.91699 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.98 13.97 21.65 0.30 -61.68 16 2 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.95 44.96 27.74 68.60 1.90 46.86 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 7 C -0.22 -12.15 10.41 84.03 0.87 -11.28 16 8 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 9 N -0.75 -33.34 4.92 -322.82 -1.59 -34.93 16 10 C 0.18 5.97 2.73 45.01 0.12 6.09 16 11 C -0.13 -3.71 5.55 30.67 0.17 -3.54 16 12 C 0.12 3.00 6.44 86.36 0.56 3.56 16 13 N -0.61 -13.89 2.98 -819.72 -2.44 -16.33 16 14 C 0.51 12.34 7.28 87.66 0.64 12.98 16 15 O -0.57 -17.66 14.08 -3.00 -0.04 -17.70 16 16 C 0.04 0.68 3.89 85.56 0.33 1.02 16 17 N -0.54 -10.31 4.42 -899.76 -3.98 -14.29 16 18 C 0.02 0.26 5.65 86.31 0.49 0.74 16 19 C 0.06 0.84 7.01 72.01 0.50 1.35 16 20 O -0.40 -8.00 10.83 -148.98 -1.61 -9.61 16 21 C 0.07 1.31 7.01 72.02 0.50 1.81 16 22 C 0.02 0.39 5.30 86.31 0.46 0.85 16 23 C 0.12 2.30 6.31 86.22 0.54 2.85 16 24 C -0.14 -4.12 5.64 30.53 0.17 -3.94 16 25 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 26 H 0.36 15.76 5.66 -92.71 -0.52 15.23 16 27 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 28 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.08 2.20 7.00 -2.39 -0.02 2.18 16 32 H 0.08 1.17 7.34 -2.39 -0.02 1.15 16 33 H 0.13 1.58 8.03 -2.39 -0.02 1.56 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 1.01 8.09 -2.39 -0.02 1.00 16 36 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 2.02 6.10 -2.39 -0.01 2.00 16 41 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.53 5.88 -2.38 -0.01 1.51 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -71.92 348.62 -1.24 -73.16 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.39 Total: 25.27 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.83 Total: 9.25 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -7.71 Total: -127.22 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.66 Total: -27.31 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Total: -71.92 -1.24 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991280174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.205 kcal (2) G-P(sol) polarization free energy of solvation -71.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds