Wall clock time and date at job start Tue Mar 31 2020 03:47:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52993 * 109.46968 * 2 1
4 4 C 1.50696 * 109.46786 * 119.99909 * 2 1 3
5 5 O 1.21286 * 119.99875 * 264.99820 * 4 2 1
6 6 N 1.34775 * 120.00329 * 85.00043 * 4 2 1
7 7 C 1.46499 * 120.00123 * 179.97438 * 6 4 2
8 8 C 1.53499 * 114.20527 * 205.00082 * 7 6 4
9 9 N 1.47066 * 87.98642 * 220.14732 * 8 7 6
10 10 C 1.36935 * 136.05905 * 207.08539 * 9 8 7
11 11 H 1.07996 * 120.00461 * 6.76058 * 10 9 8
12 12 C 1.38816 * 119.99877 * 186.76278 * 10 9 8
13 13 N 1.31618 * 119.99884 * 172.25761 * 12 10 9
14 14 Si 1.86798 * 120.00153 * 352.25282 * 12 10 9
15 15 H 1.48497 * 109.47359 * 175.36223 * 14 12 10
16 16 H 1.48503 * 109.47030 * 295.36478 * 14 12 10
17 17 H 1.48505 * 109.46945 * 55.36328 * 14 12 10
18 18 C 1.47070 * 87.88468 * 27.34150 * 9 8 7
19 19 N 1.46899 * 109.46737 * 239.99651 * 2 1 3
20 20 C 1.47020 * 110.99712 * 183.63644 * 19 2 1
21 21 C 1.53096 * 109.25662 * 177.60878 * 20 19 2
22 22 O 1.43011 * 109.25791 * 56.85141 * 21 20 19
23 23 C 1.43017 * 113.73903 * 301.32362 * 22 21 20
24 24 C 1.47015 * 111.00262 * 60.00355 * 19 2 1
25 25 H 1.09002 * 109.47611 * 300.00281 * 1 2 3
26 26 H 1.09000 * 109.47377 * 60.00330 * 1 2 3
27 27 H 1.09001 * 109.47048 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46944 * 180.02562 * 3 2 1
29 29 H 1.09000 * 109.46822 * 299.99465 * 3 2 1
30 30 H 1.09000 * 109.47675 * 60.00037 * 3 2 1
31 31 H 0.97001 * 119.99820 * 359.97438 * 6 4 2
32 32 H 1.08993 * 113.28511 * 338.06582 * 7 6 4
33 33 H 1.09001 * 113.46838 * 105.36625 * 8 7 6
34 34 H 1.09000 * 113.46983 * 334.92687 * 8 7 6
35 35 H 0.97004 * 120.00412 * 4.87236 * 13 12 10
36 36 H 1.09004 * 113.46535 * 87.44030 * 18 9 8
37 37 H 1.08996 * 113.46991 * 217.87726 * 18 9 8
38 38 H 1.09000 * 109.50547 * 297.54459 * 20 19 2
39 39 H 1.08996 * 109.50869 * 57.67022 * 20 19 2
40 40 H 1.08996 * 109.50670 * 296.90912 * 21 20 19
41 41 H 1.09001 * 109.53566 * 176.80420 * 21 20 19
42 42 H 1.08996 * 109.50779 * 298.74048 * 23 22 21
43 43 H 1.08997 * 109.54513 * 178.62810 * 23 22 21
44 44 H 1.08996 * 109.50225 * 302.32365 * 24 19 2
45 45 H 1.08998 * 109.50662 * 62.40908 * 24 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 2.3207 -0.0748 2.2223
6 7 2.1610 -2.0520 1.2288
7 6 2.6498 -2.7425 2.4248
8 6 3.3109 -4.0987 2.1425
9 7 2.6426 -4.6165 3.3459
10 6 2.8866 -5.6057 4.2608
11 1 3.8192 -6.1494 4.2324
12 6 1.9351 -5.9096 5.2248
13 7 2.1004 -6.9562 6.0056
14 14 0.4202 -4.8332 5.4139
15 1 -0.4876 -5.4295 6.4266
16 1 0.8296 -3.4754 5.8545
17 1 -0.2858 -4.7388 4.1108
18 6 1.5934 -3.6086 3.1305
19 7 2.0196 -0.6926 -1.1994
20 6 3.4867 -0.7881 -1.1907
21 6 3.9493 -1.5668 -2.4249
22 8 3.4558 -0.9218 -3.6020
23 6 2.0304 -0.8124 -3.6439
24 6 1.5483 -0.0260 -2.4220
25 1 -0.3634 0.5139 0.8899
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 3.1300 1.4424 -0.0005
29 1 1.6767 1.9562 -0.8900
30 1 1.6767 1.9564 0.8900
31 1 1.9300 -2.5603 0.4356
32 1 3.2212 -2.0970 3.0917
33 1 4.3976 -4.0774 2.2247
34 1 2.9666 -4.5658 1.2198
35 1 2.9192 -7.4738 5.9561
36 1 0.7963 -3.9466 2.4683
37 1 1.2168 -3.1698 4.0544
38 1 3.9167 0.2134 -1.2098
39 1 3.8123 -1.3074 -0.2894
40 1 3.5632 -2.5851 -2.3786
41 1 5.0387 -1.5916 -2.4530
42 1 1.5884 -1.8087 -3.6331
43 1 1.7313 -0.2913 -4.5533
44 1 0.4589 0.0109 -2.4196
45 1 1.9467 0.9878 -2.4605
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001031106811.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:47:37
Heat of formation + Delta-G solvation = 0.054714 kcal
Electronic energy + Delta-G solvation = -25736.149770 eV
Core-core repulsion = 22177.521403 eV
Total energy + Delta-G solvation = -3558.628367 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.97158 -39.34819 -38.22712 -36.54413 -33.73000 -32.24523 -32.14537 -31.46279
-27.94983 -27.58504 -26.84957 -25.40647 -24.74353 -23.45238 -21.96469 -20.81071
-19.95289 -19.17792 -17.82125 -17.44750 -16.58318 -16.20192 -16.03009 -15.51536
-15.34858 -15.26919 -14.82295 -14.60157 -14.45847 -14.07771 -13.82011 -13.16251
-13.02625 -12.81232 -12.47718 -12.36464 -12.17896 -12.11206 -11.99435 -11.74873
-11.61316 -11.58315 -11.41055 -11.33749 -10.79096 -10.57568 -10.38620 -10.03942
-9.67284 -9.54224 -9.22344 -8.88903 -8.77097 -8.52857 -7.19770 -6.35325
-3.26961 2.61361 3.24188 3.32448 3.42696 3.46155 3.57878 3.65583
4.37126 4.53359 4.57996 4.59679 4.70370 4.73467 4.80680 4.88525
4.93400 4.98640 5.10568 5.17498 5.30641 5.32158 5.37502 5.39780
5.42955 5.52036 5.53436 5.58951 5.65503 5.74878 5.86781 5.89028
5.96708 6.14375 6.24446 6.29844 6.42442 6.48469 6.53647 6.82670
6.97239 7.04266 7.70823 8.20587 8.35222 8.94246 9.46266 10.30709
11.17561
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.022729 B = 0.004073 C = 0.003751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1231.603534 B = 6872.926138 C = 7463.303056
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.089 3.911
3 C -0.167 4.167
4 C 0.526 3.474
5 O -0.541 6.541
6 N -0.703 5.703
7 C 0.097 3.903
8 C 0.118 3.882
9 N -0.621 5.621
10 C -0.306 4.306
11 H 0.085 0.915
12 C -0.021 4.021
13 N -0.932 5.932
14 Si 1.070 2.930
15 H -0.294 1.294
16 H -0.292 1.292
17 H -0.287 1.287
18 C 0.088 3.912
19 N -0.524 5.524
20 C 0.004 3.996
21 C 0.066 3.934
22 O -0.386 6.386
23 C 0.064 3.936
24 C 0.013 3.987
25 H 0.070 0.930
26 H 0.068 0.932
27 H 0.071 0.929
28 H 0.060 0.940
29 H 0.064 0.936
30 H 0.076 0.924
31 H 0.407 0.593
32 H 0.120 0.880
33 H 0.050 0.950
34 H 0.040 0.960
35 H 0.261 0.739
36 H 0.047 0.953
37 H 0.054 0.946
38 H 0.050 0.950
39 H 0.094 0.906
40 H 0.063 0.937
41 H 0.099 0.901
42 H 0.061 0.939
43 H 0.097 0.903
44 H 0.092 0.908
45 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.675 16.081 -20.934 26.451
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.003 4.003
3 C -0.226 4.226
4 C 0.311 3.689
5 O -0.417 6.417
6 N -0.354 5.354
7 C -0.009 4.009
8 C -0.010 4.010
9 N -0.350 5.350
10 C -0.432 4.432
11 H 0.102 0.898
12 C -0.220 4.220
13 N -0.574 5.574
14 Si 0.903 3.097
15 H -0.222 1.222
16 H -0.220 1.220
17 H -0.214 1.214
18 C -0.039 4.039
19 N -0.250 5.250
20 C -0.124 4.124
21 C -0.011 4.011
22 O -0.305 6.305
23 C -0.013 4.013
24 C -0.115 4.115
25 H 0.089 0.911
26 H 0.087 0.913
27 H 0.090 0.910
28 H 0.079 0.921
29 H 0.082 0.918
30 H 0.095 0.905
31 H 0.243 0.757
32 H 0.138 0.862
33 H 0.068 0.932
34 H 0.058 0.942
35 H 0.071 0.929
36 H 0.065 0.935
37 H 0.071 0.929
38 H 0.068 0.932
39 H 0.112 0.888
40 H 0.081 0.919
41 H 0.117 0.883
42 H 0.079 0.921
43 H 0.115 0.885
44 H 0.110 0.890
45 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -2.894 16.032 -19.313 25.267
hybrid contribution 1.466 0.241 -0.982 1.781
sum -1.429 16.273 -20.295 26.053
Atomic orbital electron populations
1.21857 0.91224 1.03600 1.02882 1.21337 0.97347 0.93075 0.88557
1.22250 1.01934 0.95281 1.03089 1.20201 0.77368 0.82767 0.88602
1.90718 1.49838 1.66321 1.34831 1.46067 1.65748 1.06652 1.16965
1.23516 0.97779 0.92511 0.87048 1.22624 0.97326 0.89784 0.91248
1.45685 1.23926 1.39151 1.26216 1.20107 1.04299 1.11165 1.07667
0.89762 1.25740 1.02340 0.98732 0.95238 1.70928 1.27556 1.15982
1.42901 0.83693 0.75940 0.74409 0.75659 1.22165 1.22006 1.21426
1.23219 0.93386 0.89148 0.98103 1.62463 1.10125 1.51094 1.01341
1.23000 0.87745 1.00955 1.00675 1.22660 0.99431 0.95733 0.83261
1.87987 1.21096 1.80128 1.41270 1.22664 0.81351 1.00154 0.97145
1.22901 1.01620 0.97013 0.89981 0.91120 0.91319 0.90965 0.92053
0.91755 0.90500 0.75722 0.86247 0.93150 0.94206 0.92851 0.93535
0.92851 0.93219 0.88807 0.91889 0.88315 0.92073 0.88517 0.89010
0.93208
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.24 8.23 37.16 0.31 -0.93 16
2 C 0.09 0.93 0.64 -132.76 -0.08 0.85 16
3 C -0.17 -1.67 7.31 37.15 0.27 -1.40 16
4 C 0.53 7.52 5.41 -10.99 -0.06 7.46 16
5 O -0.54 -9.84 15.69 5.55 0.09 -9.75 16
6 N -0.70 -9.91 4.28 -53.49 -0.23 -10.14 16
7 C 0.10 1.74 4.62 -67.67 -0.31 1.42 16
8 C 0.12 2.23 8.44 -8.50 -0.07 2.16 16
9 N -0.62 -15.30 3.70 -184.60 -0.68 -15.98 16
10 C -0.31 -8.88 11.08 -15.06 -0.17 -9.05 16
11 H 0.08 2.55 8.05 -52.49 -0.42 2.13 16
12 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16
13 N -0.93 -29.59 13.70 55.49 0.76 -28.83 16
14 Si 1.07 27.37 25.13 -169.99 -4.27 23.10 16
15 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16
16 H -0.29 -7.23 6.65 56.52 0.38 -6.85 16
17 H -0.29 -6.82 6.13 56.52 0.35 -6.48 16
18 C 0.09 1.90 5.53 -8.37 -0.05 1.85 16
19 N -0.52 -4.71 3.83 -220.00 -0.84 -5.55 16
20 C 0.00 0.04 4.86 -3.71 -0.02 0.02 16
21 C 0.07 0.57 7.01 37.21 0.26 0.83 16
22 O -0.39 -3.72 10.83 -35.23 -0.38 -4.10 16
23 C 0.06 0.46 7.01 37.21 0.26 0.72 16
24 C 0.01 0.09 4.87 -3.71 -0.02 0.07 16
25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
26 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16
27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
28 H 0.06 0.66 6.54 -51.93 -0.34 0.32 16
29 H 0.06 0.52 6.46 -51.93 -0.34 0.18 16
30 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16
31 H 0.41 4.96 8.07 -40.82 -0.33 4.63 16
32 H 0.12 2.33 7.45 -51.93 -0.39 1.94 16
33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
34 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16
35 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16
36 H 0.05 0.97 7.73 -51.93 -0.40 0.57 16
37 H 0.05 1.23 4.65 -51.93 -0.24 0.99 16
38 H 0.05 0.49 6.52 -51.93 -0.34 0.15 16
39 H 0.09 1.00 6.22 -51.93 -0.32 0.68 16
40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16
44 H 0.09 0.55 6.19 -51.93 -0.32 0.22 16
45 H 0.05 0.38 6.44 -51.93 -0.33 0.04 16
LS Contribution 339.93 15.07 5.12 5.12
Total: -1.00 -34.00 339.93 -7.34 -41.33
By element:
Atomic # 1 Polarization: 8.66 SS G_CDS: -7.13 Total: 1.53 kcal
Atomic # 6 Polarization: 3.05 SS G_CDS: 0.23 Total: 3.28 kcal
Atomic # 7 Polarization: -59.52 SS G_CDS: -0.99 Total: -60.51 kcal
Atomic # 8 Polarization: -13.56 SS G_CDS: -0.29 Total: -13.85 kcal
Atomic # 14 Polarization: 27.37 SS G_CDS: -4.27 Total: 23.10 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -34.00 -7.34 -41.33 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001031106811.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.388 kcal
(2) G-P(sol) polarization free energy of solvation -33.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.392 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds