Wall clock time and date at job start Tue Mar 31 2020 03:47:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52993 * 109.46968 * 2 1
4 4 C 1.50696 * 109.46786 * 119.99909 * 2 1 3
5 5 O 1.21286 * 119.99875 * 264.99820 * 4 2 1
6 6 N 1.34775 * 120.00329 * 85.00043 * 4 2 1
7 7 C 1.46499 * 120.00123 * 179.97438 * 6 4 2
8 8 C 1.53499 * 114.20527 * 205.00082 * 7 6 4
9 9 N 1.47066 * 87.98642 * 220.14732 * 8 7 6
10 10 C 1.36935 * 136.05905 * 207.08539 * 9 8 7
11 11 H 1.07996 * 120.00461 * 6.76058 * 10 9 8
12 12 C 1.38816 * 119.99877 * 186.76278 * 10 9 8
13 13 N 1.31618 * 119.99884 * 172.25761 * 12 10 9
14 14 Si 1.86798 * 120.00153 * 352.25282 * 12 10 9
15 15 H 1.48497 * 109.47359 * 175.36223 * 14 12 10
16 16 H 1.48503 * 109.47030 * 295.36478 * 14 12 10
17 17 H 1.48505 * 109.46945 * 55.36328 * 14 12 10
18 18 C 1.47070 * 87.88468 * 27.34150 * 9 8 7
19 19 N 1.46899 * 109.46737 * 239.99651 * 2 1 3
20 20 C 1.47020 * 110.99712 * 183.63644 * 19 2 1
21 21 C 1.53096 * 109.25662 * 177.60878 * 20 19 2
22 22 O 1.43011 * 109.25791 * 56.85141 * 21 20 19
23 23 C 1.43017 * 113.73903 * 301.32362 * 22 21 20
24 24 C 1.47015 * 111.00262 * 60.00355 * 19 2 1
25 25 H 1.09002 * 109.47611 * 300.00281 * 1 2 3
26 26 H 1.09000 * 109.47377 * 60.00330 * 1 2 3
27 27 H 1.09001 * 109.47048 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46944 * 180.02562 * 3 2 1
29 29 H 1.09000 * 109.46822 * 299.99465 * 3 2 1
30 30 H 1.09000 * 109.47675 * 60.00037 * 3 2 1
31 31 H 0.97001 * 119.99820 * 359.97438 * 6 4 2
32 32 H 1.08993 * 113.28511 * 338.06582 * 7 6 4
33 33 H 1.09001 * 113.46838 * 105.36625 * 8 7 6
34 34 H 1.09000 * 113.46983 * 334.92687 * 8 7 6
35 35 H 0.97004 * 120.00412 * 4.87236 * 13 12 10
36 36 H 1.09004 * 113.46535 * 87.44030 * 18 9 8
37 37 H 1.08996 * 113.46991 * 217.87726 * 18 9 8
38 38 H 1.09000 * 109.50547 * 297.54459 * 20 19 2
39 39 H 1.08996 * 109.50869 * 57.67022 * 20 19 2
40 40 H 1.08996 * 109.50670 * 296.90912 * 21 20 19
41 41 H 1.09001 * 109.53566 * 176.80420 * 21 20 19
42 42 H 1.08996 * 109.50779 * 298.74048 * 23 22 21
43 43 H 1.08997 * 109.54513 * 178.62810 * 23 22 21
44 44 H 1.08996 * 109.50225 * 302.32365 * 24 19 2
45 45 H 1.08998 * 109.50662 * 62.40908 * 24 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 2.3207 -0.0748 2.2223
6 7 2.1610 -2.0520 1.2288
7 6 2.6498 -2.7425 2.4248
8 6 3.3109 -4.0987 2.1425
9 7 2.6426 -4.6165 3.3459
10 6 2.8866 -5.6057 4.2608
11 1 3.8192 -6.1494 4.2324
12 6 1.9351 -5.9096 5.2248
13 7 2.1004 -6.9562 6.0056
14 14 0.4202 -4.8332 5.4139
15 1 -0.4876 -5.4295 6.4266
16 1 0.8296 -3.4754 5.8545
17 1 -0.2858 -4.7388 4.1108
18 6 1.5934 -3.6086 3.1305
19 7 2.0196 -0.6926 -1.1994
20 6 3.4867 -0.7881 -1.1907
21 6 3.9493 -1.5668 -2.4249
22 8 3.4558 -0.9218 -3.6020
23 6 2.0304 -0.8124 -3.6439
24 6 1.5483 -0.0260 -2.4220
25 1 -0.3634 0.5139 0.8899
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 3.1300 1.4424 -0.0005
29 1 1.6767 1.9562 -0.8900
30 1 1.6767 1.9564 0.8900
31 1 1.9300 -2.5603 0.4356
32 1 3.2212 -2.0970 3.0917
33 1 4.3976 -4.0774 2.2247
34 1 2.9666 -4.5658 1.2198
35 1 2.9192 -7.4738 5.9561
36 1 0.7963 -3.9466 2.4683
37 1 1.2168 -3.1698 4.0544
38 1 3.9167 0.2134 -1.2098
39 1 3.8123 -1.3074 -0.2894
40 1 3.5632 -2.5851 -2.3786
41 1 5.0387 -1.5916 -2.4530
42 1 1.5884 -1.8087 -3.6331
43 1 1.7313 -0.2913 -4.5533
44 1 0.4589 0.0109 -2.4196
45 1 1.9467 0.9878 -2.4605
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001031106811.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:47:36
Heat of formation + Delta-G solvation = -27.218522 kcal
Electronic energy + Delta-G solvation = -25737.332426 eV
Core-core repulsion = 22177.521403 eV
Total energy + Delta-G solvation = -3559.811023 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.94202 -40.51464 -39.53646 -37.42477 -35.31389 -34.11088 -32.99721 -32.11231
-29.76716 -28.37269 -27.57054 -27.07577 -25.77275 -24.53431 -23.33350 -21.69936
-21.55382 -20.23967 -19.56816 -18.69277 -17.65530 -17.26184 -17.17097 -16.82758
-16.20536 -15.98839 -15.91168 -15.72791 -15.44288 -15.33136 -15.16128 -14.98213
-14.04816 -13.79813 -13.62046 -13.52372 -13.35540 -13.25426 -13.14190 -13.00252
-12.81212 -12.47433 -12.43558 -12.30376 -12.20825 -12.01651 -11.49509 -11.41041
-11.29689 -11.05602 -10.83357 -10.61133 -9.95509 -9.48353 -9.25806 -8.69167
-5.51940 1.36520 1.45079 1.48510 1.64619 2.05195 2.48946 2.57399
2.94006 2.99627 3.20322 3.51315 3.52891 3.85001 3.93583 3.95310
4.04669 4.12967 4.16105 4.29979 4.30720 4.37388 4.51508 4.55214
4.58503 4.64677 4.65641 4.71211 4.71456 4.77018 4.84896 4.88958
4.92242 5.03025 5.05258 5.13133 5.17191 5.25297 5.53248 5.73903
5.86408 5.90987 6.22936 6.55962 6.65617 7.21030 7.27617 8.20250
8.86661
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.022729 B = 0.004073 C = 0.003751
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1231.603534 B = 6872.926138 C = 7463.303056
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.098 3.902
3 C -0.163 4.163
4 C 0.525 3.475
5 O -0.582 6.582
6 N -0.690 5.690
7 C 0.124 3.876
8 C 0.123 3.877
9 N -0.655 5.655
10 C -0.292 4.292
11 H 0.057 0.943
12 C -0.080 4.080
13 N -0.968 5.968
14 Si 1.107 2.893
15 H -0.301 1.301
16 H -0.285 1.285
17 H -0.257 1.257
18 C 0.081 3.919
19 N -0.521 5.521
20 C 0.007 3.993
21 C 0.069 3.931
22 O -0.404 6.404
23 C 0.060 3.940
24 C 0.013 3.987
25 H 0.061 0.939
26 H 0.097 0.903
27 H 0.072 0.928
28 H 0.048 0.952
29 H 0.089 0.911
30 H 0.063 0.937
31 H 0.420 0.580
32 H 0.103 0.897
33 H 0.055 0.945
34 H 0.070 0.930
35 H 0.248 0.752
36 H 0.065 0.935
37 H 0.039 0.961
38 H 0.043 0.957
39 H 0.080 0.920
40 H 0.066 0.934
41 H 0.105 0.895
42 H 0.064 0.936
43 H 0.116 0.884
44 H 0.112 0.888
45 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.142 17.850 -24.010 30.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.006 3.994
3 C -0.222 4.222
4 C 0.312 3.688
5 O -0.460 6.460
6 N -0.342 5.342
7 C 0.017 3.983
8 C -0.003 4.003
9 N -0.384 5.384
10 C -0.419 4.419
11 H 0.075 0.925
12 C -0.272 4.272
13 N -0.614 5.614
14 Si 0.934 3.066
15 H -0.229 1.229
16 H -0.212 1.212
17 H -0.182 1.182
18 C -0.045 4.045
19 N -0.248 5.248
20 C -0.122 4.122
21 C -0.008 4.008
22 O -0.323 6.323
23 C -0.016 4.016
24 C -0.114 4.114
25 H 0.081 0.919
26 H 0.115 0.885
27 H 0.091 0.909
28 H 0.068 0.932
29 H 0.108 0.892
30 H 0.082 0.918
31 H 0.259 0.741
32 H 0.121 0.879
33 H 0.074 0.926
34 H 0.088 0.912
35 H 0.058 0.942
36 H 0.083 0.917
37 H 0.057 0.943
38 H 0.061 0.939
39 H 0.098 0.902
40 H 0.084 0.916
41 H 0.123 0.877
42 H 0.082 0.918
43 H 0.134 0.866
44 H 0.130 0.870
45 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -4.353 17.828 -22.484 29.023
hybrid contribution 2.032 -0.255 -0.136 2.053
sum -2.321 17.574 -22.620 28.738
Atomic orbital electron populations
1.21890 0.89575 1.04009 1.03945 1.21253 0.98357 0.92581 0.87252
1.22234 1.01196 0.95124 1.03658 1.20930 0.76110 0.82382 0.89384
1.90708 1.51455 1.67066 1.36817 1.45834 1.65477 1.06814 1.16050
1.22802 0.95824 0.91875 0.87761 1.22794 0.97579 0.89701 0.90179
1.45718 1.26149 1.38916 1.27621 1.19993 1.02858 1.10923 1.08127
0.92505 1.26947 1.05362 0.99456 0.95424 1.71019 1.27548 1.17878
1.44919 0.83243 0.73374 0.73105 0.76843 1.22939 1.21207 1.18180
1.23422 0.93977 0.88861 0.98206 1.62497 1.09725 1.51085 1.01493
1.22944 0.88144 1.00565 1.00498 1.22667 0.99953 0.95562 0.82645
1.87971 1.22585 1.80248 1.41483 1.22848 0.80171 1.00653 0.97939
1.23010 1.02785 0.96778 0.88834 0.91950 0.88463 0.90876 0.93244
0.89238 0.91826 0.74145 0.87903 0.92620 0.91193 0.94230 0.91728
0.94316 0.93879 0.90212 0.91592 0.87654 0.91770 0.86591 0.86980
0.93167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.97 8.23 71.98 0.59 -1.38 16
2 C 0.10 1.79 0.64 2.78 0.00 1.79 16
3 C -0.16 -2.92 7.31 71.98 0.53 -2.39 16
4 C 0.53 14.06 5.41 87.66 0.47 14.53 16
5 O -0.58 -20.73 15.69 -3.05 -0.05 -20.78 16
6 N -0.69 -17.80 4.28 -441.52 -1.89 -19.69 16
7 C 0.12 4.23 4.62 45.55 0.21 4.44 16
8 C 0.12 4.43 8.44 83.18 0.70 5.14 16
9 N -0.66 -31.63 3.70 -737.96 -2.73 -34.35 16
10 C -0.29 -17.12 11.08 84.03 0.93 -16.19 16
11 H 0.06 3.56 8.05 -2.91 -0.02 3.54 16
12 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16
13 N -0.97 -63.29 13.70 21.65 0.30 -63.00 16
14 Si 1.11 55.22 25.13 68.60 1.72 56.95 16
15 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16
16 H -0.28 -13.67 6.65 99.48 0.66 -13.01 16
17 H -0.26 -11.37 6.13 99.48 0.61 -10.76 16
18 C 0.08 3.34 5.53 83.27 0.46 3.80 16
19 N -0.52 -7.75 3.83 -849.95 -3.25 -11.01 16
20 C 0.01 0.11 4.86 86.31 0.42 0.53 16
21 C 0.07 1.03 7.01 72.01 0.50 1.53 16
22 O -0.40 -6.71 10.83 -148.98 -1.61 -8.32 16
23 C 0.06 0.66 7.01 72.01 0.50 1.17 16
24 C 0.01 0.14 4.87 86.31 0.42 0.56 16
25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
26 H 0.10 0.86 6.35 -2.39 -0.02 0.84 16
27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
28 H 0.05 1.00 6.54 -2.39 -0.02 0.98 16
29 H 0.09 1.14 6.46 -2.39 -0.02 1.12 16
30 H 0.06 1.32 7.87 -2.39 -0.02 1.30 16
31 H 0.42 8.83 8.07 -92.71 -0.75 8.08 16
32 H 0.10 3.94 7.45 -2.39 -0.02 3.92 16
33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
34 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16
35 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16
36 H 0.07 2.45 7.73 -2.38 -0.02 2.43 16
37 H 0.04 1.72 4.65 -2.39 -0.01 1.71 16
38 H 0.04 0.78 6.52 -2.39 -0.02 0.77 16
39 H 0.08 1.56 6.22 -2.39 -0.01 1.55 16
40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16
42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
43 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16
44 H 0.11 0.77 6.19 -2.39 -0.01 0.75 16
45 H 0.05 0.56 6.44 -2.39 -0.02 0.55 16
Total: -1.00 -75.28 339.93 -1.23 -76.50
By element:
Atomic # 1 Polarization: 14.45 SS G_CDS: 0.07 Total: 14.52 kcal
Atomic # 6 Polarization: 2.95 SS G_CDS: 6.21 Total: 9.17 kcal
Atomic # 7 Polarization: -120.47 SS G_CDS: -7.57 Total: -128.04 kcal
Atomic # 8 Polarization: -27.43 SS G_CDS: -1.66 Total: -29.09 kcal
Atomic # 14 Polarization: 55.22 SS G_CDS: 1.72 Total: 56.95 kcal
Total: -75.28 -1.23 -76.50 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001031106811.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.285 kcal
(2) G-P(sol) polarization free energy of solvation -75.277 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.219 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds