Wall clock time and date at job start Tue Mar 31 2020 03:17:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.47017 * 110.99531 * 2 1
4 4 C 1.53106 * 109.25233 * 182.39163 * 3 2 1
5 5 O 1.43012 * 109.25954 * 303.15288 * 4 3 2
6 6 C 1.43016 * 113.74230 * 58.67059 * 5 4 3
7 7 H 1.08998 * 109.50315 * 61.30571 * 6 5 4
8 8 C 1.50699 * 109.50873 * 181.39837 * 6 5 4
9 9 O 1.21283 * 119.99760 * 4.99195 * 8 6 5
10 10 N 1.34771 * 120.00027 * 185.00118 * 8 6 5
11 11 C 1.46500 * 120.00242 * 179.97438 * 10 8 6
12 12 C 1.53007 * 110.88661 * 303.88006 * 11 10 8
13 13 C 1.55149 * 111.00671 * 179.97438 * 11 10 8
14 14 C 1.54321 * 102.94193 * 277.42674 * 13 11 10
15 15 N 1.47019 * 107.27111 * 337.80841 * 14 13 11
16 16 C 1.36943 * 125.64611 * 178.98711 * 15 14 13
17 17 H 1.07999 * 119.99415 * 179.97438 * 16 15 14
18 18 C 1.38813 * 120.00263 * 359.97438 * 16 15 14
19 19 N 1.31627 * 119.99790 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00139 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46968 * 359.97438 * 20 18 16
22 22 H 1.48496 * 109.47017 * 119.99706 * 20 18 16
23 23 H 1.48500 * 109.46914 * 239.99858 * 20 18 16
24 24 C 1.47417 * 108.70575 * 358.93728 * 15 14 13
25 25 C 1.47016 * 110.99965 * 123.63165 * 2 1 3
26 26 H 1.08992 * 109.47459 * 56.04505 * 1 2 3
27 27 H 1.09004 * 109.47040 * 176.04656 * 1 2 3
28 28 H 1.09000 * 109.47033 * 296.04608 * 1 2 3
29 29 H 1.08998 * 109.50871 * 302.32323 * 3 2 1
30 30 H 1.09000 * 109.50607 * 62.41728 * 3 2 1
31 31 H 1.08999 * 109.50702 * 63.08432 * 4 3 2
32 32 H 1.08993 * 109.50176 * 183.17363 * 4 3 2
33 33 H 0.96999 * 120.00077 * 359.97438 * 10 8 6
34 34 H 1.09002 * 109.46577 * 59.29849 * 12 11 10
35 35 H 1.08999 * 109.47343 * 179.29408 * 12 11 10
36 36 H 1.08999 * 109.46920 * 299.29997 * 12 11 10
37 37 H 1.09002 * 110.72260 * 35.79369 * 13 11 10
38 38 H 1.08998 * 110.72038 * 158.88851 * 13 11 10
39 39 H 1.09003 * 109.88371 * 97.22533 * 14 13 11
40 40 H 1.09002 * 109.88344 * 218.38463 * 14 13 11
41 41 H 0.96994 * 119.99849 * 180.02562 * 19 18 16
42 42 H 1.09000 * 110.37081 * 265.29270 * 24 15 14
43 43 H 1.08998 * 110.36677 * 142.96482 * 24 15 14
44 44 H 1.08993 * 109.50878 * 297.54607 * 25 2 1
45 45 H 1.08999 * 109.50694 * 57.67629 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9958 1.3726 0.0000
4 6 3.5250 1.3264 -0.0603
5 8 4.0175 0.5574 1.0403
6 6 3.5250 -0.7849 1.0709
7 1 3.8392 -1.3085 0.1681
8 6 4.0742 -1.4949 2.2815
9 8 4.7404 -0.8857 3.0914
10 7 3.8251 -2.8068 2.4639
11 6 4.3594 -3.4972 3.6404
12 6 5.8801 -3.3464 3.7176
13 6 3.9477 -4.9930 3.6422
14 6 2.5241 -4.9589 4.2369
15 7 2.4020 -3.7118 5.0059
16 6 1.2831 -3.2933 5.6754
17 1 1.2947 -2.3571 6.2137
18 6 0.1343 -4.0722 5.6620
19 7 0.1202 -5.2130 5.0054
20 14 -1.3922 -3.5010 6.5747
21 1 -1.1190 -2.1954 7.2275
22 1 -2.5151 -3.3496 5.6148
23 1 -1.7557 -4.5040 7.6076
24 6 3.6840 -2.9871 4.9379
25 6 1.9959 -0.7602 1.1428
26 1 -0.3634 0.5739 -0.8523
27 1 -0.3633 -1.0253 -0.0709
28 1 -0.3633 0.4512 0.9233
29 1 1.6133 1.9092 -0.8682
30 1 1.6821 1.8828 0.9107
31 1 3.8385 0.8644 -0.9964
32 1 3.9221 2.3399 -0.0037
33 1 3.2921 -3.2939 1.8162
34 1 6.1379 -2.2887 3.7720
35 1 6.2512 -3.8569 4.6062
36 1 6.3343 -3.7859 2.8295
37 1 3.9322 -5.3900 2.6271
38 1 4.6181 -5.5768 4.2728
39 1 1.7866 -4.9733 3.4344
40 1 2.3763 -5.8158 4.8943
41 1 -0.6827 -5.7571 4.9958
42 1 4.3004 -3.2243 5.8050
43 1 3.5097 -1.9128 4.8777
44 1 1.6828 -0.2843 2.0720
45 1 1.6135 -1.7803 1.1088
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046217998.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:17:51
Heat of formation + Delta-G solvation = -38.012555 kcal
Electronic energy + Delta-G solvation = -25995.550996 eV
Core-core repulsion = 22435.271909 eV
Total energy + Delta-G solvation = -3560.279088 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 2.37 seconds
Orbital eigenvalues (eV)
-40.35233 -39.06646 -37.13695 -35.70649 -33.91257 -32.38410 -31.17588 -29.89430
-28.79474 -28.57194 -25.68801 -25.11166 -24.21317 -23.60063 -21.21807 -20.49361
-20.07091 -19.01772 -17.48840 -16.76987 -16.40399 -16.02233 -15.52957 -15.30022
-15.01505 -14.65935 -14.62548 -14.12279 -13.89814 -13.60379 -13.43900 -13.02075
-12.75963 -12.44773 -12.13703 -11.98000 -11.89492 -11.83902 -11.76348 -11.64835
-11.45216 -10.91766 -10.89277 -10.86227 -10.35898 -10.33446 -10.05930 -9.98363
-9.77439 -9.66969 -9.12695 -8.66842 -8.58954 -8.52493 -6.80350 -5.71857
-3.03492 2.87298 3.04306 3.37979 3.44811 3.46781 3.67131 4.10800
4.49789 4.69764 4.79835 4.81923 4.95794 5.07085 5.11368 5.23588
5.34548 5.39705 5.41110 5.46987 5.48461 5.58569 5.63035 5.70848
5.74109 5.78480 5.83885 6.04148 6.14598 6.19431 6.38621 6.41528
6.55114 6.70678 6.71187 6.74987 6.80502 6.97792 7.15469 7.54450
7.56464 7.79745 7.90484 8.25435 8.58508 9.23118 9.82963 10.49218
11.40203
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.012735 B = 0.005771 C = 0.004410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2198.164960 B = 4850.559262 C = 6347.528913
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.540 5.540
3 C 0.013 3.987
4 C 0.064 3.936
5 O -0.356 6.356
6 C 0.080 3.920
7 H 0.088 0.912
8 C 0.524 3.476
9 O -0.519 6.519
10 N -0.698 5.698
11 C 0.159 3.841
12 C -0.153 4.153
13 C -0.146 4.146
14 C 0.177 3.823
15 N -0.603 5.603
16 C -0.219 4.219
17 H 0.076 0.924
18 C -0.010 4.010
19 N -0.924 5.924
20 Si 0.908 3.092
21 H -0.281 1.281
22 H -0.292 1.292
23 H -0.290 1.290
24 C 0.133 3.867
25 C 0.029 3.971
26 H 0.069 0.931
27 H 0.074 0.926
28 H 0.030 0.970
29 H 0.086 0.914
30 H 0.045 0.955
31 H 0.060 0.940
32 H 0.101 0.899
33 H 0.398 0.602
34 H 0.078 0.922
35 H 0.062 0.938
36 H 0.049 0.951
37 H 0.064 0.936
38 H 0.073 0.927
39 H 0.045 0.955
40 H 0.044 0.956
41 H 0.250 0.750
42 H 0.026 0.974
43 H 0.049 0.951
44 H 0.054 0.946
45 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.778 7.077 -13.004 15.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.265 5.265
3 C -0.116 4.116
4 C -0.014 4.014
5 O -0.273 6.273
6 C 0.018 3.982
7 H 0.106 0.894
8 C 0.308 3.692
9 O -0.394 6.394
10 N -0.350 5.350
11 C 0.072 3.928
12 C -0.211 4.211
13 C -0.185 4.185
14 C 0.053 3.947
15 N -0.329 5.329
16 C -0.348 4.348
17 H 0.094 0.906
18 C -0.205 4.205
19 N -0.572 5.572
20 Si 0.739 3.261
21 H -0.206 1.206
22 H -0.219 1.219
23 H -0.218 1.218
24 C 0.006 3.994
25 C -0.100 4.100
26 H 0.088 0.912
27 H 0.093 0.907
28 H 0.049 0.951
29 H 0.105 0.895
30 H 0.064 0.936
31 H 0.078 0.922
32 H 0.119 0.881
33 H 0.233 0.767
34 H 0.096 0.904
35 H 0.081 0.919
36 H 0.068 0.932
37 H 0.083 0.917
38 H 0.092 0.908
39 H 0.064 0.936
40 H 0.062 0.938
41 H 0.061 0.939
42 H 0.044 0.956
43 H 0.067 0.933
44 H 0.073 0.927
45 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 6.327 7.297 -12.643 15.909
hybrid contribution -1.804 0.258 0.662 1.939
sum 4.523 7.555 -11.981 14.869
Atomic orbital electron populations
1.22394 0.86331 1.02957 1.00731 1.62260 1.08712 1.13367 1.42185
1.22856 0.96641 0.90162 1.01899 1.22711 0.92201 0.96528 0.89932
1.88119 1.69146 1.21934 1.48130 1.21948 0.93182 0.85366 0.97675
0.89435 1.19837 0.80768 0.82163 0.86448 1.90658 1.38509 1.65708
1.44509 1.45715 1.54348 1.08983 1.25918 1.21495 0.92690 0.92573
0.86017 1.22043 0.93972 1.03908 1.01227 1.23230 1.00927 0.93323
1.01026 1.21153 0.89218 0.89512 0.94857 1.44448 1.08419 1.20359
1.59679 1.19103 0.88425 1.03433 1.23822 0.90618 1.24747 0.97956
0.97052 1.00779 1.69957 1.27665 1.13281 1.46340 0.86087 0.83192
0.77769 0.79040 1.20591 1.21890 1.21755 1.21876 0.88073 0.96633
0.92850 1.22684 0.93744 1.00623 0.92901 0.91211 0.90693 0.95107
0.89547 0.93637 0.92201 0.88051 0.76730 0.90352 0.91899 0.93156
0.91705 0.90818 0.93639 0.93827 0.93929 0.95607 0.93252 0.92736
0.88573
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.26 9.61 60.07 0.58 0.83 16
2 N -0.54 -6.51 4.99 -242.58 -1.21 -7.72 16
3 C 0.01 0.14 5.66 -3.71 -0.02 0.11 16
4 C 0.06 0.69 7.01 37.21 0.26 0.95 16
5 O -0.36 -5.43 10.01 -55.06 -0.55 -5.98 16
6 C 0.08 1.15 3.22 -27.83 -0.09 1.06 16
7 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16
8 C 0.52 9.04 6.55 -10.99 -0.07 8.97 16
9 O -0.52 -10.75 13.36 -14.27 -0.19 -10.94 16
10 N -0.70 -11.37 5.15 -45.62 -0.23 -11.60 16
11 C 0.16 2.81 0.83 -129.67 -0.11 2.70 16
12 C -0.15 -2.40 8.52 37.16 0.32 -2.09 16
13 C -0.15 -2.56 5.97 -24.90 -0.15 -2.71 16
14 C 0.18 4.11 5.36 -3.07 -0.02 4.09 16
15 N -0.60 -15.24 3.39 -170.08 -0.58 -15.82 16
16 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16
17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16
18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16
19 N -0.92 -26.59 10.31 55.49 0.57 -26.02 16
20 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16
21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
24 C 0.13 2.92 6.17 -2.53 -0.02 2.90 16
25 C 0.03 0.41 4.90 -3.71 -0.02 0.39 16
26 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16
27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16
29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
33 H 0.40 5.72 8.39 -40.82 -0.34 5.37 16
34 H 0.08 1.37 6.01 -51.93 -0.31 1.06 16
35 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16
36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16
38 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16
39 H 0.05 1.14 7.38 -51.93 -0.38 0.76 16
40 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16
41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16
42 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16
43 H 0.05 1.18 6.86 -51.93 -0.36 0.82 16
44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
45 H 0.10 1.33 8.02 -51.93 -0.42 0.92 16
LS Contribution 351.65 15.07 5.30 5.30
Total: -1.00 -32.70 351.65 -9.15 -41.85
By element:
Atomic # 1 Polarization: 10.83 SS G_CDS: -7.65 Total: 3.18 kcal
Atomic # 6 Polarization: 10.15 SS G_CDS: 0.42 Total: 10.56 kcal
Atomic # 7 Polarization: -59.70 SS G_CDS: -1.45 Total: -61.15 kcal
Atomic # 8 Polarization: -16.18 SS G_CDS: -0.74 Total: -16.92 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -32.70 -9.15 -41.85 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046217998.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.842 kcal
(2) G-P(sol) polarization free energy of solvation -32.705 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.863 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.37 seconds