Wall clock time and date at job start Tue Mar 31 2020 03:17:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.47017 * 110.99531 * 2 1
4 4 C 1.53106 * 109.25233 * 182.39163 * 3 2 1
5 5 O 1.43012 * 109.25954 * 303.15288 * 4 3 2
6 6 C 1.43016 * 113.74230 * 58.67059 * 5 4 3
7 7 H 1.08998 * 109.50315 * 61.30571 * 6 5 4
8 8 C 1.50699 * 109.50873 * 181.39837 * 6 5 4
9 9 O 1.21283 * 119.99760 * 4.99195 * 8 6 5
10 10 N 1.34771 * 120.00027 * 185.00118 * 8 6 5
11 11 C 1.46500 * 120.00242 * 179.97438 * 10 8 6
12 12 C 1.53007 * 110.88661 * 303.88006 * 11 10 8
13 13 C 1.55149 * 111.00671 * 179.97438 * 11 10 8
14 14 C 1.54321 * 102.94193 * 277.42674 * 13 11 10
15 15 N 1.47019 * 107.27111 * 337.80841 * 14 13 11
16 16 C 1.36943 * 125.64611 * 178.98711 * 15 14 13
17 17 H 1.07999 * 119.99415 * 179.97438 * 16 15 14
18 18 C 1.38813 * 120.00263 * 359.97438 * 16 15 14
19 19 N 1.31627 * 119.99790 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00139 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46968 * 359.97438 * 20 18 16
22 22 H 1.48496 * 109.47017 * 119.99706 * 20 18 16
23 23 H 1.48500 * 109.46914 * 239.99858 * 20 18 16
24 24 C 1.47417 * 108.70575 * 358.93728 * 15 14 13
25 25 C 1.47016 * 110.99965 * 123.63165 * 2 1 3
26 26 H 1.08992 * 109.47459 * 56.04505 * 1 2 3
27 27 H 1.09004 * 109.47040 * 176.04656 * 1 2 3
28 28 H 1.09000 * 109.47033 * 296.04608 * 1 2 3
29 29 H 1.08998 * 109.50871 * 302.32323 * 3 2 1
30 30 H 1.09000 * 109.50607 * 62.41728 * 3 2 1
31 31 H 1.08999 * 109.50702 * 63.08432 * 4 3 2
32 32 H 1.08993 * 109.50176 * 183.17363 * 4 3 2
33 33 H 0.96999 * 120.00077 * 359.97438 * 10 8 6
34 34 H 1.09002 * 109.46577 * 59.29849 * 12 11 10
35 35 H 1.08999 * 109.47343 * 179.29408 * 12 11 10
36 36 H 1.08999 * 109.46920 * 299.29997 * 12 11 10
37 37 H 1.09002 * 110.72260 * 35.79369 * 13 11 10
38 38 H 1.08998 * 110.72038 * 158.88851 * 13 11 10
39 39 H 1.09003 * 109.88371 * 97.22533 * 14 13 11
40 40 H 1.09002 * 109.88344 * 218.38463 * 14 13 11
41 41 H 0.96994 * 119.99849 * 180.02562 * 19 18 16
42 42 H 1.09000 * 110.37081 * 265.29270 * 24 15 14
43 43 H 1.08998 * 110.36677 * 142.96482 * 24 15 14
44 44 H 1.08993 * 109.50878 * 297.54607 * 25 2 1
45 45 H 1.08999 * 109.50694 * 57.67629 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9958 1.3726 0.0000
4 6 3.5250 1.3264 -0.0603
5 8 4.0175 0.5574 1.0403
6 6 3.5250 -0.7849 1.0709
7 1 3.8392 -1.3085 0.1681
8 6 4.0742 -1.4949 2.2815
9 8 4.7404 -0.8857 3.0914
10 7 3.8251 -2.8068 2.4639
11 6 4.3594 -3.4972 3.6404
12 6 5.8801 -3.3464 3.7176
13 6 3.9477 -4.9930 3.6422
14 6 2.5241 -4.9589 4.2369
15 7 2.4020 -3.7118 5.0059
16 6 1.2831 -3.2933 5.6754
17 1 1.2947 -2.3571 6.2137
18 6 0.1343 -4.0722 5.6620
19 7 0.1202 -5.2130 5.0054
20 14 -1.3922 -3.5010 6.5747
21 1 -1.1190 -2.1954 7.2275
22 1 -2.5151 -3.3496 5.6148
23 1 -1.7557 -4.5040 7.6076
24 6 3.6840 -2.9871 4.9379
25 6 1.9959 -0.7602 1.1428
26 1 -0.3634 0.5739 -0.8523
27 1 -0.3633 -1.0253 -0.0709
28 1 -0.3633 0.4512 0.9233
29 1 1.6133 1.9092 -0.8682
30 1 1.6821 1.8828 0.9107
31 1 3.8385 0.8644 -0.9964
32 1 3.9221 2.3399 -0.0037
33 1 3.2921 -3.2939 1.8162
34 1 6.1379 -2.2887 3.7720
35 1 6.2512 -3.8569 4.6062
36 1 6.3343 -3.7859 2.8295
37 1 3.9322 -5.3900 2.6271
38 1 4.6181 -5.5768 4.2728
39 1 1.7866 -4.9733 3.4344
40 1 2.3763 -5.8158 4.8943
41 1 -0.6827 -5.7571 4.9958
42 1 4.3004 -3.2243 5.8050
43 1 3.5097 -1.9128 4.8777
44 1 1.6828 -0.2843 2.0720
45 1 1.6135 -1.7803 1.1088
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046217998.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:17:48
Heat of formation + Delta-G solvation = -62.463439 kcal
Electronic energy + Delta-G solvation = -25996.611266 eV
Core-core repulsion = 22435.271909 eV
Total energy + Delta-G solvation = -3561.339358 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-41.62449 -40.31613 -38.69416 -36.74383 -35.65482 -33.94009 -32.63518 -31.38507
-30.34614 -29.68049 -27.53209 -26.27620 -25.33769 -25.12378 -22.57682 -21.98522
-21.42402 -20.48935 -19.08642 -18.36045 -17.64796 -17.09264 -16.89536 -16.58693
-16.54608 -16.03617 -15.82465 -15.69861 -15.30314 -15.14568 -14.73778 -14.27264
-14.16398 -13.85898 -13.54993 -13.42087 -13.36613 -13.10172 -12.97051 -12.87361
-12.82019 -12.74291 -12.44669 -12.11645 -12.04038 -11.97678 -11.77961 -11.71064
-11.52521 -10.80158 -10.73025 -10.52274 -10.03460 -9.59154 -8.87098 -7.87294
-5.20568 1.41022 1.42279 1.52068 1.53166 1.84598 2.45973 2.68111
3.02026 3.30907 3.54365 3.64681 3.67343 3.79411 3.87471 3.95313
4.04071 4.12028 4.19893 4.28626 4.43381 4.51981 4.57495 4.63628
4.65323 4.69968 4.77341 4.79207 4.86387 4.89385 4.93257 4.94609
5.01941 5.09688 5.37873 5.41684 5.62875 5.68837 5.70943 5.77784
5.83993 6.00802 6.19164 6.59944 7.11036 7.25534 7.76033 8.40467
9.22548
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.012735 B = 0.005771 C = 0.004410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2198.164960 B = 4850.559262 C = 6347.528913
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.022 3.978
2 N -0.536 5.536
3 C 0.011 3.989
4 C 0.058 3.942
5 O -0.387 6.387
6 C 0.089 3.911
7 H 0.118 0.882
8 C 0.520 3.480
9 O -0.558 6.558
10 N -0.692 5.692
11 C 0.168 3.832
12 C -0.143 4.143
13 C -0.127 4.127
14 C 0.185 3.815
15 N -0.619 5.619
16 C -0.239 4.239
17 H 0.065 0.935
18 C -0.055 4.055
19 N -0.943 5.943
20 Si 0.969 3.031
21 H -0.276 1.276
22 H -0.288 1.288
23 H -0.289 1.289
24 C 0.130 3.870
25 C 0.037 3.963
26 H 0.096 0.904
27 H 0.073 0.927
28 H 0.016 0.984
29 H 0.118 0.882
30 H 0.028 0.972
31 H 0.079 0.921
32 H 0.122 0.878
33 H 0.410 0.590
34 H 0.058 0.942
35 H 0.074 0.926
36 H 0.077 0.923
37 H 0.100 0.900
38 H 0.092 0.908
39 H 0.021 0.979
40 H 0.009 0.991
41 H 0.248 0.752
42 H 0.025 0.975
43 H 0.021 0.979
44 H 0.017 0.983
45 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.316 7.138 -15.126 17.878
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 N -0.261 5.261
3 C -0.116 4.116
4 C -0.018 4.018
5 O -0.305 6.305
6 C 0.028 3.972
7 H 0.135 0.865
8 C 0.305 3.695
9 O -0.436 6.436
10 N -0.344 5.344
11 C 0.081 3.919
12 C -0.202 4.202
13 C -0.165 4.165
14 C 0.060 3.940
15 N -0.345 5.345
16 C -0.369 4.369
17 H 0.083 0.917
18 C -0.249 4.249
19 N -0.592 5.592
20 Si 0.798 3.202
21 H -0.201 1.201
22 H -0.215 1.215
23 H -0.216 1.216
24 C 0.004 3.996
25 C -0.093 4.093
26 H 0.115 0.885
27 H 0.092 0.908
28 H 0.035 0.965
29 H 0.136 0.864
30 H 0.047 0.953
31 H 0.097 0.903
32 H 0.140 0.860
33 H 0.246 0.754
34 H 0.077 0.923
35 H 0.093 0.907
36 H 0.096 0.904
37 H 0.119 0.881
38 H 0.110 0.890
39 H 0.040 0.960
40 H 0.027 0.973
41 H 0.058 0.942
42 H 0.043 0.957
43 H 0.040 0.960
44 H 0.035 0.965
45 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 6.869 7.358 -14.793 17.893
hybrid contribution -1.995 0.305 1.341 2.423
sum 4.874 7.663 -13.452 16.230
Atomic orbital electron populations
1.22474 0.85597 1.03289 1.01196 1.62335 1.09369 1.14062 1.40319
1.22973 0.96787 0.89393 1.02491 1.23011 0.92166 0.97201 0.89400
1.88083 1.69806 1.22360 1.50258 1.21876 0.92753 0.85514 0.97094
0.86476 1.20415 0.79991 0.82191 0.86893 1.90639 1.40354 1.66514
1.46075 1.45675 1.54176 1.09019 1.25535 1.21376 0.93853 0.92345
0.84320 1.21961 0.91923 1.03086 1.03206 1.23106 0.97091 0.93400
1.02943 1.20963 0.92436 0.87358 0.93237 1.44668 1.08775 1.21500
1.59568 1.19301 0.89933 1.03296 1.24338 0.91724 1.25451 1.00407
0.97273 1.01751 1.70138 1.28048 1.13913 1.47091 0.85151 0.79788
0.77390 0.77864 1.20128 1.21451 1.21563 1.21969 0.87272 0.94867
0.95537 1.22539 0.93912 1.00600 0.92204 0.88528 0.90844 0.96480
0.86373 0.95347 0.90302 0.86050 0.75429 0.92289 0.90676 0.90364
0.88148 0.88952 0.96045 0.97275 0.94246 0.95712 0.96031 0.96490
0.88648
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.45 9.61 127.69 1.23 1.68 16
2 N -0.54 -12.11 4.99 -921.40 -4.59 -16.70 16
3 C 0.01 0.22 5.66 86.32 0.49 0.71 16
4 C 0.06 1.14 7.01 72.02 0.50 1.64 16
5 O -0.39 -11.46 10.01 -130.02 -1.30 -12.77 16
6 C 0.09 2.49 3.22 29.88 0.10 2.58 16
7 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16
8 C 0.52 17.85 6.55 87.66 0.57 18.42 16
9 O -0.56 -23.55 13.36 15.92 0.21 -23.34 16
10 N -0.69 -21.92 5.15 -416.65 -2.14 -24.07 16
11 C 0.17 5.77 0.83 5.00 0.00 5.77 16
12 C -0.14 -4.20 8.52 71.98 0.61 -3.59 16
13 C -0.13 -4.18 5.97 31.78 0.19 -3.99 16
14 C 0.18 8.64 5.36 86.73 0.47 9.11 16
15 N -0.62 -32.13 3.39 -692.00 -2.35 -34.48 16
16 C -0.24 -13.84 10.28 84.03 0.86 -12.97 16
17 H 0.06 3.77 7.83 -2.91 -0.02 3.74 16
18 C -0.06 -3.15 5.49 84.86 0.47 -2.69 16
19 N -0.94 -55.31 10.31 21.65 0.22 -55.09 16
20 Si 0.97 46.38 29.55 68.60 2.03 48.41 16
21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16
22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16
24 C 0.13 5.83 6.17 86.86 0.54 6.37 16
25 C 0.04 1.03 4.90 86.31 0.42 1.45 16
26 H 0.10 1.44 8.13 -2.39 -0.02 1.42 16
27 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16
28 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16
29 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16
30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16
33 H 0.41 11.12 8.39 -92.71 -0.78 10.34 16
34 H 0.06 2.01 6.01 -2.39 -0.01 1.99 16
35 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16
36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
37 H 0.10 2.65 8.09 -2.39 -0.02 2.63 16
38 H 0.09 2.76 8.04 -2.39 -0.02 2.74 16
39 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16
40 H 0.01 0.48 7.51 -2.39 -0.02 0.46 16
41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16
42 H 0.03 1.12 8.03 -2.39 -0.02 1.10 16
43 H 0.02 1.07 6.86 -2.39 -0.02 1.06 16
44 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16
45 H 0.10 2.64 8.02 -2.39 -0.02 2.62 16
Total: -1.00 -73.67 351.65 -1.28 -74.95
By element:
Atomic # 1 Polarization: 18.39 SS G_CDS: 0.19 Total: 18.58 kcal
Atomic # 6 Polarization: 18.05 SS G_CDS: 6.45 Total: 24.50 kcal
Atomic # 7 Polarization: -121.47 SS G_CDS: -8.86 Total: -130.34 kcal
Atomic # 8 Polarization: -35.01 SS G_CDS: -1.09 Total: -36.10 kcal
Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal
Total: -73.67 -1.28 -74.95 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046217998.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.488 kcal
(2) G-P(sol) polarization free energy of solvation -73.671 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.182 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds