Wall clock time and date at job start Tue Mar 31 2020 03:18:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.47010 * 111.03829 * 2 1
4 4 C 1.53102 * 109.29421 * 177.65179 * 3 2 1
5 5 O 1.43019 * 109.25578 * 56.83019 * 4 3 2
6 6 C 1.43018 * 113.73501 * 301.32679 * 5 4 3
7 7 C 1.47016 * 110.99818 * 236.33881 * 2 1 3
8 8 H 1.09002 * 109.50232 * 62.41738 * 7 2 1
9 9 C 1.50701 * 109.50920 * 302.32797 * 7 2 1
10 10 O 1.21280 * 119.99931 * 332.22728 * 9 7 2
11 11 N 1.34770 * 119.99893 * 152.21728 * 9 7 2
12 12 C 1.46502 * 120.00354 * 179.97438 * 11 9 7
13 13 C 1.52998 * 110.88790 * 297.58336 * 12 11 9
14 14 C 1.55394 * 110.93058 * 173.71061 * 12 11 9
15 15 C 1.54328 * 102.82769 * 277.25770 * 14 12 11
16 16 N 1.47019 * 107.40376 * 337.97192 * 15 14 12
17 17 C 1.36933 * 125.65268 * 178.89683 * 16 15 14
18 18 H 1.07999 * 120.00239 * 179.97438 * 17 16 15
19 19 C 1.38815 * 119.99710 * 359.97438 * 17 16 15
20 20 N 1.31619 * 120.00137 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16
22 22 H 1.48491 * 109.47223 * 359.97438 * 21 19 17
23 23 H 1.48498 * 109.47192 * 120.00182 * 21 19 17
24 24 H 1.48507 * 109.47075 * 239.99582 * 21 19 17
25 25 C 1.47429 * 108.69917 * 358.86704 * 16 15 14
26 26 H 1.09001 * 109.47448 * 189.66772 * 1 2 3
27 27 H 1.09010 * 109.46835 * 309.65788 * 1 2 3
28 28 H 1.08997 * 109.47609 * 69.65594 * 1 2 3
29 29 H 1.09004 * 109.51241 * 57.69341 * 3 2 1
30 30 H 1.09005 * 109.51053 * 297.60675 * 3 2 1
31 31 H 1.08992 * 109.50980 * 296.89338 * 4 3 2
32 32 H 1.09005 * 109.54136 * 176.78061 * 4 3 2
33 33 H 1.09005 * 109.50425 * 298.73874 * 6 5 4
34 34 H 1.08997 * 109.50065 * 178.61061 * 6 5 4
35 35 H 0.97000 * 120.00377 * 0.02562 * 11 9 7
36 36 H 1.08996 * 109.47400 * 182.42025 * 13 12 11
37 37 H 1.09003 * 109.46909 * 302.42097 * 13 12 11
38 38 H 1.08999 * 109.47467 * 62.41672 * 13 12 11
39 39 H 1.08996 * 110.69815 * 158.96750 * 14 12 11
40 40 H 1.09006 * 110.85383 * 35.61521 * 14 12 11
41 41 H 1.09005 * 109.88224 * 218.47947 * 15 14 12
42 42 H 1.09000 * 109.88322 * 97.46939 * 15 14 12
43 43 H 0.96999 * 120.00037 * 180.02562 * 20 19 17
44 44 H 1.09008 * 110.36192 * 142.96410 * 25 16 15
45 45 H 1.09003 * 110.36649 * 265.28353 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9967 1.3721 0.0000
4 6 3.5259 1.3259 0.0592
5 8 4.0175 0.5568 -1.0418
6 6 3.5249 -0.7855 -1.0718
7 6 1.9958 -0.7608 -1.1424
8 1 1.6820 -0.2856 -2.0718
9 6 1.4669 -2.1711 -1.0947
10 8 1.1714 -2.6723 -0.0306
11 7 1.3222 -2.8754 -2.2346
12 6 0.8087 -4.2467 -2.1883
13 6 1.7479 -5.1544 -1.3916
14 6 0.5789 -4.8021 -3.6213
15 6 -0.8087 -4.2359 -3.9898
16 7 -1.5017 -3.9176 -2.7328
17 6 -2.7536 -3.3729 -2.6274
18 1 -3.1766 -3.1761 -1.6533
19 6 -3.4789 -3.0735 -3.7725
20 7 -2.9631 -3.3127 -4.9595
21 14 -5.1869 -2.3310 -3.6287
22 1 -5.5342 -2.1622 -2.1948
23 1 -5.2101 -1.0082 -4.3031
24 1 -6.1747 -3.2328 -4.2739
25 6 -0.6258 -4.2829 -1.6046
26 1 -0.3634 -1.0131 0.1726
27 1 -0.3633 0.6559 0.7913
28 1 -0.3634 0.3573 -0.9635
29 1 1.6149 1.9090 0.8684
30 1 1.6830 1.8828 -0.9105
31 1 3.8402 0.8640 0.9950
32 1 3.9238 2.3392 0.0018
33 1 3.8391 -1.3088 -0.1687
34 1 3.9215 -1.2991 -1.9476
35 1 1.5588 -2.4747 -3.0857
36 1 1.3670 -6.1755 -1.4080
37 1 2.7420 -5.1301 -1.8382
38 1 1.8041 -4.8041 -0.3610
39 1 0.5611 -5.8918 -3.6139
40 1 1.3408 -4.4323 -4.3076
41 1 -1.3766 -4.9804 -4.5479
42 1 -0.6934 -3.3324 -4.5886
43 1 -3.4698 -3.1032 -5.7597
44 1 -0.7251 -3.5575 -0.7970
45 1 -0.8649 -5.2846 -1.2475
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046247275.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:10
Heat of formation + Delta-G solvation = -36.352110 kcal
Electronic energy + Delta-G solvation = -26178.793237 eV
Core-core repulsion = 22618.586152 eV
Total energy + Delta-G solvation = -3560.207085 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-40.49001 -39.04632 -37.20525 -35.53412 -33.92536 -32.28861 -31.22461 -29.90738
-28.81412 -28.59843 -25.67932 -24.89925 -24.20689 -23.62477 -21.67492 -20.36386
-19.82148 -19.03845 -17.41742 -16.69446 -16.53931 -16.26171 -15.68436 -15.15347
-15.01724 -14.62639 -14.31842 -14.30781 -13.83307 -13.66693 -13.38248 -13.05245
-12.70761 -12.43638 -12.24676 -11.99423 -11.92436 -11.80376 -11.70672 -11.61364
-11.28053 -10.93871 -10.89679 -10.82684 -10.39292 -10.36215 -10.06315 -10.00297
-9.91642 -9.66786 -9.13860 -8.64860 -8.54011 -8.40387 -6.80379 -5.71777
-3.03437 2.85905 3.27705 3.38318 3.44806 3.46791 3.60987 3.92961
4.49802 4.69407 4.80282 4.83236 4.94874 5.03751 5.09704 5.21381
5.38183 5.39729 5.47459 5.52383 5.56382 5.60482 5.60915 5.62562
5.72359 5.81722 6.00079 6.12409 6.15381 6.21155 6.34694 6.39595
6.53846 6.67525 6.74916 6.82712 6.88328 6.91581 7.14158 7.54458
7.56069 7.79602 7.90685 8.25584 8.59695 9.22979 9.83168 10.49363
11.40318
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.015728 B = 0.005202 C = 0.004352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1779.802777 B = 5381.669864 C = 6431.729847
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.517 5.517
3 C 0.017 3.983
4 C 0.062 3.938
5 O -0.381 6.381
6 C 0.079 3.921
7 C 0.031 3.969
8 H 0.068 0.932
9 C 0.525 3.475
10 O -0.518 6.518
11 N -0.701 5.701
12 C 0.157 3.843
13 C -0.149 4.149
14 C -0.146 4.146
15 C 0.177 3.823
16 N -0.603 5.603
17 C -0.220 4.220
18 H 0.076 0.924
19 C -0.010 4.010
20 N -0.924 5.924
21 Si 0.908 3.092
22 H -0.280 1.280
23 H -0.292 1.292
24 H -0.291 1.291
25 C 0.132 3.868
26 H 0.087 0.913
27 H 0.068 0.932
28 H 0.029 0.971
29 H 0.089 0.911
30 H 0.043 0.957
31 H 0.062 0.938
32 H 0.099 0.901
33 H 0.067 0.933
34 H 0.102 0.898
35 H 0.397 0.603
36 H 0.062 0.938
37 H 0.050 0.950
38 H 0.071 0.929
39 H 0.072 0.928
40 H 0.064 0.936
41 H 0.043 0.957
42 H 0.045 0.955
43 H 0.250 0.750
44 H 0.055 0.945
45 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.154 5.498 6.118 16.371
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.242 5.242
3 C -0.111 4.111
4 C -0.015 4.015
5 O -0.299 6.299
6 C 0.001 3.999
7 C -0.082 4.082
8 H 0.086 0.914
9 C 0.309 3.691
10 O -0.393 6.393
11 N -0.352 5.352
12 C 0.070 3.930
13 C -0.207 4.207
14 C -0.185 4.185
15 C 0.052 3.948
16 N -0.329 5.329
17 C -0.348 4.348
18 H 0.094 0.906
19 C -0.206 4.206
20 N -0.573 5.573
21 Si 0.739 3.261
22 H -0.205 1.205
23 H -0.219 1.219
24 H -0.218 1.218
25 C 0.005 3.995
26 H 0.105 0.895
27 H 0.087 0.913
28 H 0.048 0.952
29 H 0.108 0.892
30 H 0.062 0.938
31 H 0.080 0.920
32 H 0.117 0.883
33 H 0.086 0.914
34 H 0.120 0.880
35 H 0.231 0.769
36 H 0.081 0.919
37 H 0.069 0.931
38 H 0.089 0.911
39 H 0.091 0.909
40 H 0.083 0.917
41 H 0.061 0.939
42 H 0.063 0.937
43 H 0.061 0.939
44 H 0.073 0.927
45 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges 14.027 5.038 7.052 16.488
hybrid contribution -1.499 0.957 -1.127 2.106
sum 12.527 5.995 5.925 15.099
Atomic orbital electron populations
1.22508 0.85540 1.04351 1.00357 1.61995 1.09274 1.12362 1.40607
1.22854 0.96322 0.89925 1.02031 1.22713 0.92375 0.96362 0.90082
1.87996 1.69582 1.23699 1.48642 1.22528 0.89849 0.84237 1.03279
1.22335 0.97460 0.93925 0.94454 0.91444 1.19902 0.78370 0.86514
0.84347 1.90653 1.48919 1.70249 1.29463 1.45859 1.65589 1.15066
1.08698 1.21539 0.94307 0.80370 0.96735 1.21986 0.98292 0.98986
1.01458 1.23267 1.00626 1.00571 0.94027 1.21141 0.86639 0.98463
0.88527 1.44441 1.14962 1.73426 1.00058 1.19095 0.89966 1.32937
0.92824 0.90589 1.24754 0.98643 1.01868 0.95288 1.69957 1.36971
1.53840 0.96489 0.86083 0.84226 0.78480 0.77272 1.20539 1.21897
1.21761 1.21881 0.87373 0.98160 0.92088 0.89483 0.91287 0.95224
0.89228 0.93833 0.92019 0.88320 0.91442 0.87983 0.76947 0.91878
0.93122 0.91051 0.90897 0.91749 0.93901 0.93714 0.93935 0.92683
0.95786
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 9.12 60.06 0.55 0.85 16
2 N -0.52 -7.26 4.53 -235.97 -1.07 -8.33 16
3 C 0.02 0.19 5.65 -3.71 -0.02 0.16 16
4 C 0.06 0.61 7.01 37.21 0.26 0.87 16
5 O -0.38 -4.59 10.83 -35.23 -0.38 -4.97 16
6 C 0.08 0.94 6.27 37.21 0.23 1.17 16
7 C 0.03 0.43 2.36 -68.75 -0.16 0.27 16
8 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
9 C 0.52 8.58 5.47 -10.99 -0.06 8.52 16
10 O -0.52 -9.96 12.14 5.56 0.07 -9.89 16
11 N -0.70 -11.16 5.17 -45.51 -0.24 -11.40 16
12 C 0.16 2.72 0.82 -129.54 -0.11 2.61 16
13 C -0.15 -2.22 8.59 37.16 0.32 -1.90 16
14 C -0.15 -2.55 6.01 -24.77 -0.15 -2.70 16
15 C 0.18 4.14 5.36 -3.06 -0.02 4.12 16
16 N -0.60 -15.27 3.39 -170.06 -0.58 -15.85 16
17 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16
18 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16
19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16
20 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16
21 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16
22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
25 C 0.13 2.86 6.11 -2.53 -0.02 2.85 16
26 H 0.09 1.58 6.40 -51.93 -0.33 1.25 16
27 H 0.07 0.89 8.05 -51.92 -0.42 0.47 16
28 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16
29 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16
30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16
33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16
35 H 0.40 5.63 8.49 -40.82 -0.35 5.28 16
36 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16
37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
38 H 0.07 1.17 6.53 -51.93 -0.34 0.83 16
39 H 0.07 1.19 8.02 -51.93 -0.42 0.78 16
40 H 0.06 0.96 8.05 -51.93 -0.42 0.55 16
41 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16
42 H 0.04 1.15 7.37 -51.93 -0.38 0.76 16
43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
44 H 0.05 1.29 6.32 -51.92 -0.33 0.96 16
45 H 0.02 0.53 8.04 -51.93 -0.42 0.11 16
LS Contribution 348.02 15.07 5.24 5.24
Total: -1.00 -32.14 348.02 -8.38 -40.52
By element:
Atomic # 1 Polarization: 11.11 SS G_CDS: -7.56 Total: 3.56 kcal
Atomic # 6 Polarization: 9.55 SS G_CDS: 0.58 Total: 10.13 kcal
Atomic # 7 Polarization: -60.54 SS G_CDS: -1.31 Total: -61.85 kcal
Atomic # 8 Polarization: -14.55 SS G_CDS: -0.31 Total: -14.86 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -32.14 -8.38 -40.52 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046247275.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.169 kcal
(2) G-P(sol) polarization free energy of solvation -32.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.973 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds