Wall clock time and date at job start Tue Mar 31 2020 03:18:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.47010 * 111.03829 * 2 1
4 4 C 1.53102 * 109.29421 * 177.65179 * 3 2 1
5 5 O 1.43019 * 109.25578 * 56.83019 * 4 3 2
6 6 C 1.43018 * 113.73501 * 301.32679 * 5 4 3
7 7 C 1.47016 * 110.99818 * 236.33881 * 2 1 3
8 8 H 1.09002 * 109.50232 * 62.41738 * 7 2 1
9 9 C 1.50701 * 109.50920 * 302.32797 * 7 2 1
10 10 O 1.21280 * 119.99931 * 332.22728 * 9 7 2
11 11 N 1.34770 * 119.99893 * 152.21728 * 9 7 2
12 12 C 1.46502 * 120.00354 * 179.97438 * 11 9 7
13 13 C 1.52998 * 110.88790 * 297.58336 * 12 11 9
14 14 C 1.55394 * 110.93058 * 173.71061 * 12 11 9
15 15 C 1.54328 * 102.82769 * 277.25770 * 14 12 11
16 16 N 1.47019 * 107.40376 * 337.97192 * 15 14 12
17 17 C 1.36933 * 125.65268 * 178.89683 * 16 15 14
18 18 H 1.07999 * 120.00239 * 179.97438 * 17 16 15
19 19 C 1.38815 * 119.99710 * 359.97438 * 17 16 15
20 20 N 1.31619 * 120.00137 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16
22 22 H 1.48491 * 109.47223 * 359.97438 * 21 19 17
23 23 H 1.48498 * 109.47192 * 120.00182 * 21 19 17
24 24 H 1.48507 * 109.47075 * 239.99582 * 21 19 17
25 25 C 1.47429 * 108.69917 * 358.86704 * 16 15 14
26 26 H 1.09001 * 109.47448 * 189.66772 * 1 2 3
27 27 H 1.09010 * 109.46835 * 309.65788 * 1 2 3
28 28 H 1.08997 * 109.47609 * 69.65594 * 1 2 3
29 29 H 1.09004 * 109.51241 * 57.69341 * 3 2 1
30 30 H 1.09005 * 109.51053 * 297.60675 * 3 2 1
31 31 H 1.08992 * 109.50980 * 296.89338 * 4 3 2
32 32 H 1.09005 * 109.54136 * 176.78061 * 4 3 2
33 33 H 1.09005 * 109.50425 * 298.73874 * 6 5 4
34 34 H 1.08997 * 109.50065 * 178.61061 * 6 5 4
35 35 H 0.97000 * 120.00377 * 0.02562 * 11 9 7
36 36 H 1.08996 * 109.47400 * 182.42025 * 13 12 11
37 37 H 1.09003 * 109.46909 * 302.42097 * 13 12 11
38 38 H 1.08999 * 109.47467 * 62.41672 * 13 12 11
39 39 H 1.08996 * 110.69815 * 158.96750 * 14 12 11
40 40 H 1.09006 * 110.85383 * 35.61521 * 14 12 11
41 41 H 1.09005 * 109.88224 * 218.47947 * 15 14 12
42 42 H 1.09000 * 109.88322 * 97.46939 * 15 14 12
43 43 H 0.96999 * 120.00037 * 180.02562 * 20 19 17
44 44 H 1.09008 * 110.36192 * 142.96410 * 25 16 15
45 45 H 1.09003 * 110.36649 * 265.28353 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9967 1.3721 0.0000
4 6 3.5259 1.3259 0.0592
5 8 4.0175 0.5568 -1.0418
6 6 3.5249 -0.7855 -1.0718
7 6 1.9958 -0.7608 -1.1424
8 1 1.6820 -0.2856 -2.0718
9 6 1.4669 -2.1711 -1.0947
10 8 1.1714 -2.6723 -0.0306
11 7 1.3222 -2.8754 -2.2346
12 6 0.8087 -4.2467 -2.1883
13 6 1.7479 -5.1544 -1.3916
14 6 0.5789 -4.8021 -3.6213
15 6 -0.8087 -4.2359 -3.9898
16 7 -1.5017 -3.9176 -2.7328
17 6 -2.7536 -3.3729 -2.6274
18 1 -3.1766 -3.1761 -1.6533
19 6 -3.4789 -3.0735 -3.7725
20 7 -2.9631 -3.3127 -4.9595
21 14 -5.1869 -2.3310 -3.6287
22 1 -5.5342 -2.1622 -2.1948
23 1 -5.2101 -1.0082 -4.3031
24 1 -6.1747 -3.2328 -4.2739
25 6 -0.6258 -4.2829 -1.6046
26 1 -0.3634 -1.0131 0.1726
27 1 -0.3633 0.6559 0.7913
28 1 -0.3634 0.3573 -0.9635
29 1 1.6149 1.9090 0.8684
30 1 1.6830 1.8828 -0.9105
31 1 3.8402 0.8640 0.9950
32 1 3.9238 2.3392 0.0018
33 1 3.8391 -1.3088 -0.1687
34 1 3.9215 -1.2991 -1.9476
35 1 1.5588 -2.4747 -3.0857
36 1 1.3670 -6.1755 -1.4080
37 1 2.7420 -5.1301 -1.8382
38 1 1.8041 -4.8041 -0.3610
39 1 0.5611 -5.8918 -3.6139
40 1 1.3408 -4.4323 -4.3076
41 1 -1.3766 -4.9804 -4.5479
42 1 -0.6934 -3.3324 -4.5886
43 1 -3.4698 -3.1032 -5.7597
44 1 -0.7251 -3.5575 -0.7970
45 1 -0.8649 -5.2846 -1.2475
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046247275.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:18:09
Heat of formation + Delta-G solvation = -61.160367 kcal
Electronic energy + Delta-G solvation = -26179.869004 eV
Core-core repulsion = 22618.586152 eV
Total energy + Delta-G solvation = -3561.282852 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-41.70407 -40.25945 -38.67551 -36.62146 -35.63921 -33.83553 -32.58115 -31.41300
-30.35237 -29.76863 -27.52407 -25.98811 -25.33860 -25.23612 -22.87817 -22.08502
-21.05082 -20.47213 -19.05044 -18.25828 -17.54016 -17.36335 -16.98290 -16.70362
-16.22467 -16.08643 -15.74419 -15.59465 -15.38174 -14.93994 -14.86129 -14.29322
-14.03659 -13.84887 -13.56369 -13.52942 -13.34459 -13.26399 -13.03678 -12.86838
-12.75584 -12.68526 -12.26449 -12.14082 -12.03832 -11.97506 -11.73760 -11.68449
-11.52277 -10.93635 -10.73531 -10.43279 -9.97343 -9.50516 -8.87892 -7.87998
-5.21270 1.40817 1.41712 1.51877 1.58669 2.07764 2.45658 2.65080
2.93604 3.30424 3.53156 3.67533 3.72161 3.80389 3.90704 3.94062
4.05676 4.19210 4.20118 4.22658 4.42200 4.46910 4.57929 4.64189
4.65211 4.70002 4.80482 4.81915 4.87319 4.91166 4.92970 4.96930
5.05019 5.09436 5.36885 5.41191 5.63596 5.64783 5.71142 5.77466
5.85971 6.03259 6.18385 6.63595 7.10007 7.31791 7.76039 8.40237
9.22018
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.015728 B = 0.005202 C = 0.004352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1779.802777 B = 5381.669864 C = 6431.729847
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 N -0.529 5.529
3 C 0.016 3.984
4 C 0.060 3.940
5 O -0.389 6.389
6 C 0.086 3.914
7 C 0.034 3.966
8 H 0.066 0.934
9 C 0.524 3.476
10 O -0.549 6.549
11 N -0.699 5.699
12 C 0.168 3.832
13 C -0.138 4.138
14 C -0.128 4.128
15 C 0.184 3.816
16 N -0.620 5.620
17 C -0.238 4.238
18 H 0.068 0.932
19 C -0.058 4.058
20 N -0.946 5.946
21 Si 0.971 3.029
22 H -0.273 1.273
23 H -0.290 1.290
24 H -0.289 1.289
25 C 0.129 3.871
26 H 0.050 0.950
27 H 0.089 0.911
28 H 0.018 0.982
29 H 0.108 0.892
30 H 0.042 0.958
31 H 0.064 0.936
32 H 0.128 0.872
33 H 0.063 0.937
34 H 0.123 0.877
35 H 0.407 0.593
36 H 0.073 0.927
37 H 0.079 0.921
38 H 0.055 0.945
39 H 0.091 0.909
40 H 0.098 0.902
41 H 0.007 0.993
42 H 0.016 0.984
43 H 0.247 0.753
44 H 0.032 0.968
45 H 0.022 0.978
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.022 6.192 6.289 18.292
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.255 5.255
3 C -0.111 4.111
4 C -0.017 4.017
5 O -0.307 6.307
6 C 0.008 3.992
7 C -0.078 4.078
8 H 0.084 0.916
9 C 0.309 3.691
10 O -0.426 6.426
11 N -0.350 5.350
12 C 0.081 3.919
13 C -0.197 4.197
14 C -0.166 4.166
15 C 0.060 3.940
16 N -0.346 5.346
17 C -0.367 4.367
18 H 0.085 0.915
19 C -0.252 4.252
20 N -0.595 5.595
21 Si 0.799 3.201
22 H -0.197 1.197
23 H -0.217 1.217
24 H -0.216 1.216
25 C 0.002 3.998
26 H 0.068 0.932
27 H 0.108 0.892
28 H 0.036 0.964
29 H 0.126 0.874
30 H 0.060 0.940
31 H 0.083 0.917
32 H 0.146 0.854
33 H 0.081 0.919
34 H 0.141 0.859
35 H 0.242 0.758
36 H 0.092 0.908
37 H 0.098 0.902
38 H 0.074 0.926
39 H 0.109 0.891
40 H 0.117 0.883
41 H 0.025 0.975
42 H 0.035 0.965
43 H 0.056 0.944
44 H 0.050 0.950
45 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges 15.926 5.740 7.228 18.407
hybrid contribution -2.122 0.764 -1.122 2.519
sum 13.804 6.504 6.106 16.436
Atomic orbital electron populations
1.22346 0.86752 1.02398 1.00453 1.62006 1.08312 1.14373 1.40763
1.22995 0.97195 0.88126 1.02830 1.22915 0.91412 0.97673 0.89658
1.87994 1.69573 1.23662 1.49503 1.22534 0.87978 0.84619 1.04069
1.22350 0.98981 0.92098 0.94399 0.91611 1.20336 0.77599 0.87324
0.83809 1.90640 1.50227 1.71105 1.30632 1.45845 1.65168 1.14772
1.09256 1.21403 0.92242 0.81763 0.96493 1.21904 0.99031 0.98612
1.00135 1.23144 0.97462 1.01512 0.94484 1.20939 0.89383 0.96405
0.87309 1.44681 1.14833 1.73173 1.01891 1.19328 0.91549 1.33179
0.92644 0.91454 1.25489 1.02076 1.02593 0.95019 1.70151 1.38008
1.54546 0.96790 0.85125 0.79990 0.77490 0.77459 1.19749 1.21659
1.21628 1.21985 0.89974 0.97010 0.90792 0.93151 0.89221 0.96352
0.87374 0.93975 0.91745 0.85418 0.91905 0.85934 0.75788 0.90768
0.90204 0.92614 0.89051 0.88315 0.97488 0.96543 0.94355 0.95016
0.96007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.87 9.12 127.69 1.17 2.04 16
2 N -0.53 -14.45 4.53 -900.47 -4.08 -18.53 16
3 C 0.02 0.32 5.65 86.32 0.49 0.81 16
4 C 0.06 1.03 7.01 72.02 0.50 1.53 16
5 O -0.39 -8.38 10.83 -148.98 -1.61 -9.99 16
6 C 0.09 1.86 6.27 72.01 0.45 2.31 16
7 C 0.03 0.92 2.36 44.18 0.10 1.03 16
8 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
9 C 0.52 16.96 5.47 87.66 0.48 17.44 16
10 O -0.55 -21.37 12.14 -3.03 -0.04 -21.41 16
11 N -0.70 -21.56 5.17 -416.28 -2.15 -23.71 16
12 C 0.17 5.62 0.82 5.08 0.00 5.62 16
13 C -0.14 -3.80 8.59 71.98 0.62 -3.18 16
14 C -0.13 -4.21 6.01 31.87 0.19 -4.02 16
15 C 0.18 8.76 5.36 86.73 0.46 9.22 16
16 N -0.62 -32.27 3.39 -691.95 -2.35 -34.62 16
17 C -0.24 -13.76 10.28 84.03 0.86 -12.89 16
18 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16
19 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16
20 N -0.95 -56.32 10.31 21.65 0.22 -56.09 16
21 Si 0.97 46.61 29.55 68.60 2.03 48.63 16
22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16
23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16
24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16
25 C 0.13 5.68 6.11 86.85 0.53 6.21 16
26 H 0.05 1.91 6.40 -2.39 -0.02 1.89 16
27 H 0.09 2.28 8.05 -2.38 -0.02 2.26 16
28 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16
29 H 0.11 1.75 8.09 -2.38 -0.02 1.73 16
30 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16
31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
32 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16
33 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16
34 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16
35 H 0.41 10.91 8.49 -92.71 -0.79 10.12 16
36 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16
37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16
38 H 0.05 1.74 6.53 -2.39 -0.02 1.73 16
39 H 0.09 2.73 8.02 -2.39 -0.02 2.71 16
40 H 0.10 2.63 8.05 -2.38 -0.02 2.61 16
41 H 0.01 0.37 7.51 -2.38 -0.02 0.35 16
42 H 0.02 0.86 7.37 -2.39 -0.02 0.84 16
43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16
44 H 0.03 1.54 6.32 -2.38 -0.02 1.53 16
45 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16
Total: -1.00 -72.13 348.02 -1.46 -73.59
By element:
Atomic # 1 Polarization: 18.70 SS G_CDS: 0.19 Total: 18.89 kcal
Atomic # 6 Polarization: 16.90 SS G_CDS: 6.33 Total: 23.23 kcal
Atomic # 7 Polarization: -124.59 SS G_CDS: -8.36 Total: -132.95 kcal
Atomic # 8 Polarization: -29.75 SS G_CDS: -1.65 Total: -31.40 kcal
Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal
Total: -72.13 -1.46 -73.59 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046247275.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.430 kcal
(2) G-P(sol) polarization free energy of solvation -72.130 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.700 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.160 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds