Wall clock time and date at job start Tue Mar 31 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47015 * 111.00353 * 2 1 4 4 C 1.53098 * 109.26024 * 182.39619 * 3 2 1 5 5 O 1.43016 * 109.25605 * 303.15424 * 4 3 2 6 6 C 1.43013 * 113.74179 * 58.66725 * 5 4 3 7 7 C 1.47016 * 110.99986 * 123.64038 * 2 1 3 8 8 H 1.09000 * 109.53713 * 297.55929 * 7 2 1 9 9 C 1.50690 * 109.50736 * 57.66819 * 7 2 1 10 10 O 1.21281 * 120.00582 * 27.79104 * 9 7 2 11 11 N 1.34777 * 119.99964 * 207.78915 * 9 7 2 12 12 C 1.46502 * 120.00316 * 179.97438 * 11 9 7 13 13 C 1.53004 * 110.77582 * 61.78807 * 12 11 9 14 14 C 1.55442 * 110.70832 * 184.99995 * 12 11 9 15 15 C 1.54908 * 101.44969 * 82.89444 * 14 12 11 16 16 N 1.47423 * 104.93197 * 37.00534 * 15 14 12 17 17 C 1.36929 * 125.65098 * 155.83852 * 16 15 14 18 18 H 1.08002 * 120.00026 * 179.97438 * 17 16 15 19 19 C 1.38814 * 120.00067 * 359.97438 * 17 16 15 20 20 N 1.31616 * 120.00078 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99745 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47128 * 90.00331 * 21 19 17 23 23 H 1.48508 * 109.46915 * 209.99718 * 21 19 17 24 24 H 1.48494 * 109.47493 * 329.99941 * 21 19 17 25 25 C 1.47030 * 108.69858 * 335.81727 * 16 15 14 26 26 H 1.09003 * 109.46937 * 290.49073 * 1 2 3 27 27 H 1.09000 * 109.47104 * 50.48264 * 1 2 3 28 28 H 1.08998 * 109.47575 * 170.48556 * 1 2 3 29 29 H 1.08995 * 109.50500 * 62.45430 * 3 2 1 30 30 H 1.09003 * 109.54111 * 302.35553 * 3 2 1 31 31 H 1.08991 * 109.50819 * 183.21512 * 4 3 2 32 32 H 1.09003 * 109.54276 * 63.10398 * 4 3 2 33 33 H 1.09002 * 109.50888 * 181.39787 * 6 5 4 34 34 H 1.08995 * 109.54286 * 61.28875 * 6 5 4 35 35 H 0.97002 * 119.99731 * 0.02562 * 11 9 7 36 36 H 1.09001 * 109.47181 * 298.21783 * 13 12 11 37 37 H 1.09004 * 109.47216 * 58.21645 * 13 12 11 38 38 H 1.09000 * 109.47143 * 178.21336 * 13 12 11 39 39 H 1.09001 * 111.11865 * 324.83919 * 14 12 11 40 40 H 1.09001 * 111.01655 * 200.89658 * 14 12 11 41 41 H 1.09000 * 110.36541 * 278.10807 * 15 14 12 42 42 H 1.09003 * 110.36897 * 155.89795 * 15 14 12 43 43 H 0.96997 * 120.00011 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.88298 * 120.47935 * 25 16 15 45 45 H 1.09006 * 109.87943 * 241.48914 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3263 -0.0604 5 8 4.0175 0.5572 1.0401 6 6 3.5249 -0.7850 1.0708 7 6 1.9958 -0.7603 1.1427 8 1 1.6828 -0.2850 2.0723 9 6 1.4670 -2.1706 1.0955 10 8 1.1716 -2.6723 0.0316 11 7 1.3222 -2.8745 2.2357 12 6 0.8075 -4.2453 2.1901 13 6 1.7395 -5.1483 1.3796 14 6 0.6102 -4.8065 3.6262 15 6 -0.7778 -4.2262 3.9952 16 7 -1.5554 -4.2762 2.7437 17 6 -2.9211 -4.3182 2.6538 18 1 -3.3977 -4.3528 1.6853 19 6 -3.6930 -4.3163 3.8076 20 7 -3.1122 -4.2736 4.9879 21 14 -5.5561 -4.3729 3.6848 22 1 -6.0092 -5.7870 3.6818 23 1 -6.1504 -3.6651 4.8473 24 1 -5.9897 -3.7114 2.4280 25 6 -0.6215 -4.2730 1.6081 26 1 -0.3633 0.3598 0.9627 27 1 -0.3633 0.6539 -0.7928 28 1 -0.3634 -1.0135 -0.1699 29 1 1.6828 1.8825 0.9109 30 1 1.6134 1.9099 -0.8678 31 1 3.9223 2.3397 -0.0031 32 1 3.8392 0.8647 -0.9965 33 1 3.9221 -1.2987 1.9463 34 1 3.8384 -1.3092 0.1680 35 1 1.5580 -2.4731 3.0867 36 1 1.7935 -4.7866 0.3528 37 1 2.7353 -5.1338 1.8227 38 1 1.3539 -6.1678 1.3859 39 1 1.3810 -4.4359 4.3019 40 1 0.5890 -5.8963 3.6205 41 1 -0.6791 -3.1967 4.3397 42 1 -1.2532 -4.8380 4.7619 43 1 -3.6516 -4.2726 5.7941 44 1 -0.7612 -5.1739 1.0108 45 1 -0.7904 -3.3899 0.9918 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046247276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:13 Heat of formation + Delta-G solvation = -34.479404 kcal Electronic energy + Delta-G solvation = -25956.184381 eV Core-core repulsion = 22396.058502 eV Total energy + Delta-G solvation = -3560.125879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56935 -39.10544 -37.24486 -35.60643 -34.00172 -32.32466 -31.25730 -29.89967 -28.84639 -28.63690 -25.69113 -24.96001 -24.28596 -23.60866 -21.69015 -20.42525 -19.92919 -19.02437 -17.44889 -16.77611 -16.60194 -16.33710 -15.72840 -15.22865 -15.06774 -14.66619 -14.37205 -14.30867 -13.90378 -13.66783 -13.38407 -12.93352 -12.76339 -12.49614 -12.33861 -12.22769 -11.94674 -11.77828 -11.69493 -11.56886 -11.35704 -10.96062 -10.89920 -10.85345 -10.40492 -10.36625 -10.09519 -10.05374 -9.87241 -9.65265 -9.18183 -8.66476 -8.63922 -8.48294 -6.81773 -5.65945 -3.06289 2.78146 3.19702 3.39776 3.45036 3.46876 3.55106 3.85918 4.49014 4.63116 4.74336 4.76617 4.88030 5.00638 5.03597 5.20371 5.34193 5.38553 5.46920 5.47226 5.49272 5.50947 5.55587 5.56806 5.72518 5.74616 6.01665 6.09589 6.15696 6.22101 6.34697 6.44626 6.50483 6.67538 6.69169 6.79127 6.83718 6.86117 7.13707 7.44022 7.62798 7.78523 7.85698 8.34622 8.52021 9.22562 9.83354 10.48220 11.38317 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.004334 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.146034 B = 6459.197348 C = 7162.444318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.517 5.517 3 C 0.017 3.983 4 C 0.061 3.939 5 O -0.381 6.381 6 C 0.078 3.922 7 C 0.031 3.969 8 H 0.068 0.932 9 C 0.522 3.478 10 O -0.514 6.514 11 N -0.707 5.707 12 C 0.160 3.840 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.218 4.218 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.925 5.925 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.138 3.862 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.009 0.991 42 H 0.108 0.892 43 H 0.251 0.749 44 H 0.029 0.971 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 8.283 -5.874 17.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.111 4.111 4 C -0.016 4.016 5 O -0.299 6.299 6 C 0.001 3.999 7 C -0.082 4.082 8 H 0.085 0.915 9 C 0.306 3.694 10 O -0.389 6.389 11 N -0.359 5.359 12 C 0.074 3.926 13 C -0.207 4.207 14 C -0.185 4.185 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.346 4.346 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.574 5.574 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.011 3.989 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.027 0.973 42 H 0.126 0.874 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.285 7.758 -6.825 17.631 hybrid contribution -1.488 0.640 0.991 1.899 sum 12.797 8.398 -5.834 16.380 Atomic orbital electron populations 1.22516 0.85679 1.04343 1.00288 1.61998 1.09189 1.12459 1.40618 1.22859 0.96392 0.89810 1.02048 1.22716 0.92313 0.96408 0.90132 1.87998 1.69535 1.23670 1.48670 1.22528 0.89732 0.84271 1.03386 1.22348 0.97619 0.93846 0.94380 0.91471 1.19950 0.78469 0.86604 0.84406 1.90675 1.48606 1.70173 1.29420 1.46041 1.65931 1.15239 1.08702 1.21405 0.93813 0.80195 0.97193 1.22029 0.98255 0.99140 1.01291 1.23406 1.00816 1.00999 0.93295 1.21925 0.86229 0.98080 0.91009 1.44501 1.01437 1.86760 1.00295 1.19093 0.80128 1.42435 0.92955 0.90576 1.24750 0.98146 1.02626 0.95198 1.69771 1.32957 1.58049 0.96607 0.86082 0.85014 0.77610 0.76887 1.21577 1.21703 1.20784 1.21586 0.87207 0.98897 0.91200 0.95405 0.91139 0.89527 0.93825 0.89170 0.88273 0.91967 0.87919 0.91378 0.76969 0.91079 0.93119 0.91751 0.91877 0.90520 0.97293 0.87449 0.93820 0.95271 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.12 60.06 0.55 0.82 16 2 N -0.52 -6.90 4.53 -235.98 -1.07 -7.97 16 3 C 0.02 0.18 5.65 -3.71 -0.02 0.15 16 4 C 0.06 0.58 7.01 37.21 0.26 0.84 16 5 O -0.38 -4.38 10.83 -35.23 -0.38 -4.76 16 6 C 0.08 0.89 6.27 37.21 0.23 1.13 16 7 C 0.03 0.40 2.36 -68.76 -0.16 0.24 16 8 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 9 C 0.52 8.25 5.31 -10.99 -0.06 8.19 16 10 O -0.51 -9.73 12.30 5.56 0.07 -9.66 16 11 N -0.71 -10.90 5.15 -45.77 -0.24 -11.13 16 12 C 0.16 2.80 0.81 -129.83 -0.11 2.69 16 13 C -0.15 -2.29 8.41 37.16 0.31 -1.98 16 14 C -0.15 -2.61 6.11 -24.43 -0.15 -2.76 16 15 C 0.15 3.58 5.86 -2.53 -0.01 3.57 16 16 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 17 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.14 3.05 6.13 -3.06 -0.02 3.03 16 26 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 27 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 28 H 0.09 1.49 6.39 -51.93 -0.33 1.16 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.40 5.27 8.48 -40.82 -0.35 4.92 16 36 H 0.07 1.19 6.46 -51.93 -0.34 0.85 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 39 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 40 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.03 0.66 7.82 -51.93 -0.41 0.26 16 45 H 0.03 0.79 6.48 -51.93 -0.34 0.45 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -32.19 347.22 -8.36 -40.54 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.51 Total: 3.62 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 0.57 Total: 9.17 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -1.32 Total: -61.36 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.31 Total: -14.42 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.19 -8.36 -40.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046247276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.065 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds