Wall clock time and date at job start Tue Mar 31 2020 03:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.50698 * 109.47014 * 119.99623 * 2 1 3 5 5 O 1.21282 * 119.99982 * 346.39138 * 4 2 1 6 6 N 1.34778 * 120.00158 * 166.38494 * 4 2 1 7 7 C 1.47750 * 121.64693 * 3.90968 * 6 4 2 8 8 C 1.53011 * 108.78749 * 271.25659 * 7 6 4 9 9 C 1.50702 * 109.44526 * 304.76891 * 8 7 6 10 10 O 1.21285 * 120.23272 * 296.12281 * 9 8 7 11 11 N 1.35496 * 119.52078 * 116.10361 * 9 8 7 12 12 C 1.47132 * 118.10326 * 180.29815 * 11 9 8 13 13 C 1.53014 * 109.09701 * 99.92726 * 12 11 9 14 14 N 1.47771 * 108.78737 * 301.48060 * 13 12 11 15 15 C 1.36935 * 121.63877 * 276.62746 * 14 13 12 16 16 H 1.08001 * 119.99372 * 141.42683 * 15 14 13 17 17 C 1.38810 * 120.00473 * 321.42061 * 15 14 13 18 18 N 1.31618 * 119.99748 * 161.31795 * 17 15 14 19 19 Si 1.86799 * 119.99922 * 341.32299 * 17 15 14 20 20 H 1.48498 * 109.47121 * 94.17328 * 19 17 15 21 21 H 1.48501 * 109.46861 * 214.17106 * 19 17 15 22 22 H 1.48500 * 109.46925 * 334.17195 * 19 17 15 23 23 C 1.47738 * 116.71336 * 96.90552 * 14 13 12 24 24 C 1.47771 * 121.64847 * 183.93354 * 6 4 2 25 25 H 1.08998 * 109.47165 * 300.00817 * 1 2 3 26 26 H 1.09009 * 109.46969 * 60.00341 * 1 2 3 27 27 H 1.08998 * 109.47504 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 239.99704 * 2 1 3 29 29 H 1.08999 * 109.47653 * 172.59038 * 3 2 1 30 30 H 1.09009 * 109.47074 * 292.58296 * 3 2 1 31 31 H 1.08995 * 109.47347 * 52.57886 * 3 2 1 32 32 H 1.09000 * 109.58290 * 151.46982 * 7 6 4 33 33 H 1.08994 * 109.70099 * 31.11944 * 7 6 4 34 34 H 1.09004 * 109.47577 * 184.77199 * 8 7 6 35 35 H 1.09001 * 109.47799 * 64.76271 * 8 7 6 36 36 H 0.97001 * 120.94948 * 0.31941 * 11 9 8 37 37 H 1.08998 * 109.53497 * 340.03573 * 12 11 9 38 38 H 1.09003 * 109.59319 * 219.84868 * 12 11 9 39 39 H 1.08998 * 109.58541 * 181.68406 * 13 12 11 40 40 H 1.09008 * 109.69960 * 61.33888 * 13 12 11 41 41 H 0.97005 * 119.99685 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.57378 * 345.18244 * 23 14 13 43 43 H 1.08999 * 109.58262 * 105.57627 * 23 14 13 44 44 H 1.09001 * 109.58303 * 170.34342 * 24 6 4 45 45 H 1.08990 * 109.58638 * 290.62076 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2719 -0.9522 2.1439 6 7 3.3264 -1.0769 1.3160 7 6 4.3026 -0.7263 0.2637 8 6 4.3013 -1.8291 -0.7969 9 6 4.5709 -3.1580 -0.1392 10 8 5.6334 -3.3641 0.4082 11 7 3.6176 -4.1206 -0.1635 12 6 3.9114 -5.4036 0.4939 13 6 3.2481 -5.4231 1.8727 14 7 3.7627 -4.2864 2.6645 15 6 4.9466 -4.3649 3.3482 16 1 5.6071 -3.5112 3.3839 17 6 5.2976 -5.5416 3.9956 18 7 6.5515 -5.7590 4.3315 19 14 3.9904 -6.8164 4.3900 20 1 3.9396 -7.8260 3.3023 21 1 4.3238 -7.4867 5.6724 22 1 2.6688 -6.1497 4.5088 23 6 2.9341 -3.0636 2.6871 24 6 3.8390 -1.8498 2.4664 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1219 1.4454 0.1325 30 1 1.7891 1.9166 -0.9489 31 1 1.5724 1.9932 0.8161 32 1 5.2972 -0.6416 0.7016 33 1 4.0235 0.2222 -0.1951 34 1 5.0772 -1.6247 -1.5347 35 1 3.3296 -1.8581 -1.2899 36 1 2.7660 -3.9683 -0.6021 37 1 4.9896 -5.5171 0.6065 38 1 3.5200 -6.2221 -0.1103 39 1 3.4855 -6.3585 2.3793 40 1 2.1675 -5.3316 1.7620 41 1 6.7968 -6.5814 4.7835 42 1 2.1888 -3.1127 1.8932 43 1 2.4364 -2.9773 3.6530 44 1 4.8551 -2.1848 2.2579 45 1 3.8368 -1.2228 3.3579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070939674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:26 Heat of formation + Delta-G solvation = -28.307269 kcal Electronic energy + Delta-G solvation = -27096.184641 eV Core-core repulsion = 23536.326406 eV Total energy + Delta-G solvation = -3559.858235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28112 -38.88087 -36.16937 -35.63407 -34.57646 -33.57512 -31.73443 -30.60049 -29.66177 -27.37476 -26.81559 -25.01739 -23.85409 -23.15740 -21.42450 -20.41232 -19.81833 -18.65179 -17.31522 -16.76798 -16.24961 -16.00643 -15.51698 -15.29753 -14.81453 -14.68116 -14.30667 -13.82813 -13.70722 -13.44611 -13.07752 -12.95781 -12.75314 -12.51743 -12.41372 -12.28512 -12.16184 -11.98446 -11.76090 -11.71082 -11.27408 -11.08075 -10.99647 -10.88582 -10.59798 -10.48124 -10.27361 -9.87051 -9.49093 -9.34314 -9.11417 -8.68530 -8.34482 -8.27136 -6.62083 -5.83413 -3.26328 2.83617 3.11686 3.30108 3.35321 3.52768 3.58982 3.79683 4.43389 4.62562 4.70381 4.80994 4.88301 4.95631 5.07211 5.15381 5.33380 5.38824 5.42388 5.48353 5.58293 5.63494 5.67035 5.77076 5.77629 5.86670 6.01439 6.03263 6.04356 6.11722 6.14848 6.20555 6.39671 6.44565 6.51293 6.80555 6.93466 7.02218 7.09182 7.72560 8.05552 8.15988 8.40960 8.52940 8.89605 9.05171 9.82555 10.28908 11.32508 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.005921 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.791924 B = 4727.807747 C = 5074.650972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C -0.148 4.148 4 C 0.517 3.483 5 O -0.536 6.536 6 N -0.612 5.612 7 C 0.110 3.890 8 C -0.160 4.160 9 C 0.514 3.486 10 O -0.506 6.506 11 N -0.725 5.725 12 C 0.092 3.908 13 C 0.116 3.884 14 N -0.600 5.600 15 C -0.237 4.237 16 H 0.080 0.920 17 C 0.031 3.969 18 N -0.905 5.905 19 Si 0.882 3.118 20 H -0.289 1.289 21 H -0.305 1.305 22 H -0.273 1.273 23 C 0.148 3.852 24 C 0.095 3.905 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.389 0.611 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.260 0.740 42 H 0.050 0.950 43 H 0.028 0.972 44 H 0.114 0.886 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 11.297 -14.884 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C -0.205 4.205 4 C 0.304 3.696 5 O -0.412 6.412 6 N -0.346 5.346 7 C -0.014 4.014 8 C -0.202 4.202 9 C 0.298 3.702 10 O -0.379 6.379 11 N -0.377 5.377 12 C -0.034 4.034 13 C -0.011 4.011 14 N -0.325 5.325 15 C -0.366 4.366 16 H 0.097 0.903 17 C -0.168 4.168 18 N -0.547 5.547 19 Si 0.714 3.286 20 H -0.217 1.217 21 H -0.234 1.234 22 H -0.198 1.198 23 C 0.023 3.977 24 C -0.027 4.027 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.222 0.778 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.132 0.868 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.818 10.922 -13.849 19.719 hybrid contribution -1.051 -0.857 -0.025 1.357 sum -9.869 10.065 -13.874 19.778 Atomic orbital electron populations 1.21603 0.92725 1.02583 1.01985 1.21348 0.98119 0.97334 0.96988 1.21913 1.01579 0.94286 1.02758 1.20474 0.81499 0.78974 0.88638 1.90704 1.55181 1.55313 1.40011 1.48914 1.07979 1.54914 1.22809 1.21951 0.94484 0.96358 0.88588 1.22232 1.03511 0.94938 0.99527 1.20331 0.84592 0.85129 0.80106 1.90826 1.24635 1.80033 1.42404 1.46074 1.17717 1.15855 1.58012 1.22186 1.04052 0.83018 0.94127 1.21865 0.95417 0.92762 0.91044 1.44652 1.22869 1.10391 1.54603 1.18549 0.93040 1.00732 1.24242 0.90271 1.25445 0.95618 0.98144 0.97601 1.69849 1.15640 1.25986 1.43238 0.86853 0.83799 0.81479 0.76458 1.21746 1.23356 1.19804 1.21333 0.91675 0.86125 0.98604 1.22718 1.01189 0.92360 0.86467 0.91714 0.92366 0.92293 0.89179 0.91571 0.91577 0.91932 0.88994 0.89204 0.88021 0.90714 0.77847 0.88503 0.92820 0.93014 0.93942 0.93021 0.93118 0.95356 0.86768 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 8.58 37.16 0.32 -0.96 16 2 C -0.12 -1.15 2.48 -91.78 -0.23 -1.38 16 3 C -0.15 -1.18 8.86 37.16 0.33 -0.85 16 4 C 0.52 7.50 6.20 -10.99 -0.07 7.43 16 5 O -0.54 -9.96 14.63 5.56 0.08 -9.88 16 6 N -0.61 -9.02 2.44 -171.64 -0.42 -9.44 16 7 C 0.11 1.25 5.22 -3.35 -0.02 1.24 16 8 C -0.16 -1.77 6.12 -27.88 -0.17 -1.94 16 9 C 0.51 8.43 4.72 -10.66 -0.05 8.38 16 10 O -0.51 -11.03 14.88 5.55 0.08 -10.94 16 11 N -0.72 -11.13 4.71 -59.67 -0.28 -11.41 16 12 C 0.09 1.70 6.57 -3.69 -0.02 1.67 16 13 C 0.12 2.46 5.11 -3.34 -0.02 2.44 16 14 N -0.60 -14.22 1.83 -171.19 -0.31 -14.54 16 15 C -0.24 -6.63 9.12 -15.06 -0.14 -6.77 16 16 H 0.08 2.44 6.72 -52.49 -0.35 2.09 16 17 C 0.03 0.92 5.40 -17.43 -0.09 0.82 16 18 N -0.90 -28.26 13.97 55.49 0.78 -27.48 16 19 Si 0.88 22.87 24.90 -169.99 -4.23 18.64 16 20 H -0.29 -7.19 6.70 56.52 0.38 -6.82 16 21 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 22 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 23 C 0.15 3.17 4.53 -3.36 -0.02 3.16 16 24 C 0.09 1.83 4.84 -3.34 -0.02 1.81 16 25 H 0.06 0.72 7.95 -51.93 -0.41 0.31 16 26 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.72 6.38 -51.93 -0.33 0.39 16 29 H 0.07 0.50 5.48 -51.93 -0.28 0.22 16 30 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.09 1.17 7.83 -51.93 -0.41 0.76 16 33 H 0.09 0.73 4.55 -51.93 -0.24 0.49 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 36 H 0.39 4.72 8.70 -40.82 -0.36 4.37 16 37 H 0.10 2.18 7.02 -51.93 -0.36 1.81 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.05 1.21 3.04 -51.93 -0.16 1.06 16 40 H 0.04 0.82 7.77 -51.92 -0.40 0.41 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.05 1.02 6.09 -51.93 -0.32 0.71 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 2.51 4.06 -51.93 -0.21 2.30 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -35.23 331.62 -6.21 -41.44 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.71 Total: 3.56 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -0.19 Total: 15.06 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.24 Total: -62.87 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.16 Total: -20.83 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.23 Total: 18.64 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.23 -6.21 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070939674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.137 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds