Wall clock time and date at job start Tue Mar 31 2020 03:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.50698 * 109.47014 * 119.99623 * 2 1 3 5 5 O 1.21282 * 119.99982 * 346.39138 * 4 2 1 6 6 N 1.34778 * 120.00158 * 166.38494 * 4 2 1 7 7 C 1.47750 * 121.64693 * 3.90968 * 6 4 2 8 8 C 1.53011 * 108.78749 * 271.25659 * 7 6 4 9 9 C 1.50702 * 109.44526 * 304.76891 * 8 7 6 10 10 O 1.21285 * 120.23272 * 296.12281 * 9 8 7 11 11 N 1.35496 * 119.52078 * 116.10361 * 9 8 7 12 12 C 1.47132 * 118.10326 * 180.29815 * 11 9 8 13 13 C 1.53014 * 109.09701 * 99.92726 * 12 11 9 14 14 N 1.47771 * 108.78737 * 301.48060 * 13 12 11 15 15 C 1.36935 * 121.63877 * 276.62746 * 14 13 12 16 16 H 1.08001 * 119.99372 * 141.42683 * 15 14 13 17 17 C 1.38810 * 120.00473 * 321.42061 * 15 14 13 18 18 N 1.31618 * 119.99748 * 161.31795 * 17 15 14 19 19 Si 1.86799 * 119.99922 * 341.32299 * 17 15 14 20 20 H 1.48498 * 109.47121 * 94.17328 * 19 17 15 21 21 H 1.48501 * 109.46861 * 214.17106 * 19 17 15 22 22 H 1.48500 * 109.46925 * 334.17195 * 19 17 15 23 23 C 1.47738 * 116.71336 * 96.90552 * 14 13 12 24 24 C 1.47771 * 121.64847 * 183.93354 * 6 4 2 25 25 H 1.08998 * 109.47165 * 300.00817 * 1 2 3 26 26 H 1.09009 * 109.46969 * 60.00341 * 1 2 3 27 27 H 1.08998 * 109.47504 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47319 * 239.99704 * 2 1 3 29 29 H 1.08999 * 109.47653 * 172.59038 * 3 2 1 30 30 H 1.09009 * 109.47074 * 292.58296 * 3 2 1 31 31 H 1.08995 * 109.47347 * 52.57886 * 3 2 1 32 32 H 1.09000 * 109.58290 * 151.46982 * 7 6 4 33 33 H 1.08994 * 109.70099 * 31.11944 * 7 6 4 34 34 H 1.09004 * 109.47577 * 184.77199 * 8 7 6 35 35 H 1.09001 * 109.47799 * 64.76271 * 8 7 6 36 36 H 0.97001 * 120.94948 * 0.31941 * 11 9 8 37 37 H 1.08998 * 109.53497 * 340.03573 * 12 11 9 38 38 H 1.09003 * 109.59319 * 219.84868 * 12 11 9 39 39 H 1.08998 * 109.58541 * 181.68406 * 13 12 11 40 40 H 1.09008 * 109.69960 * 61.33888 * 13 12 11 41 41 H 0.97005 * 119.99685 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.57378 * 345.18244 * 23 14 13 43 43 H 1.08999 * 109.58262 * 105.57627 * 23 14 13 44 44 H 1.09001 * 109.58303 * 170.34342 * 24 6 4 45 45 H 1.08990 * 109.58638 * 290.62076 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2719 -0.9522 2.1439 6 7 3.3264 -1.0769 1.3160 7 6 4.3026 -0.7263 0.2637 8 6 4.3013 -1.8291 -0.7969 9 6 4.5709 -3.1580 -0.1392 10 8 5.6334 -3.3641 0.4082 11 7 3.6176 -4.1206 -0.1635 12 6 3.9114 -5.4036 0.4939 13 6 3.2481 -5.4231 1.8727 14 7 3.7627 -4.2864 2.6645 15 6 4.9466 -4.3649 3.3482 16 1 5.6071 -3.5112 3.3839 17 6 5.2976 -5.5416 3.9956 18 7 6.5515 -5.7590 4.3315 19 14 3.9904 -6.8164 4.3900 20 1 3.9396 -7.8260 3.3023 21 1 4.3238 -7.4867 5.6724 22 1 2.6688 -6.1497 4.5088 23 6 2.9341 -3.0636 2.6871 24 6 3.8390 -1.8498 2.4664 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1219 1.4454 0.1325 30 1 1.7891 1.9166 -0.9489 31 1 1.5724 1.9932 0.8161 32 1 5.2972 -0.6416 0.7016 33 1 4.0235 0.2222 -0.1951 34 1 5.0772 -1.6247 -1.5347 35 1 3.3296 -1.8581 -1.2899 36 1 2.7660 -3.9683 -0.6021 37 1 4.9896 -5.5171 0.6065 38 1 3.5200 -6.2221 -0.1103 39 1 3.4855 -6.3585 2.3793 40 1 2.1675 -5.3316 1.7620 41 1 6.7968 -6.5814 4.7835 42 1 2.1888 -3.1127 1.8932 43 1 2.4364 -2.9773 3.6530 44 1 4.8551 -2.1848 2.2579 45 1 3.8368 -1.2228 3.3579 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070939674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:26 Heat of formation + Delta-G solvation = -55.725051 kcal Electronic energy + Delta-G solvation = -27097.373565 eV Core-core repulsion = 23536.326406 eV Total energy + Delta-G solvation = -3561.047159 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50254 -40.19266 -37.93227 -36.87915 -35.56948 -35.05246 -33.72620 -31.95265 -31.17310 -28.58696 -27.97813 -26.59273 -25.20092 -24.51610 -22.59289 -22.29283 -21.17359 -19.74172 -18.66687 -18.45425 -17.63393 -17.38174 -17.08337 -16.63993 -16.31403 -15.93160 -15.76208 -15.26630 -14.95350 -14.73786 -14.55801 -14.32834 -14.24830 -14.12188 -13.83026 -13.44183 -13.31628 -13.01877 -12.95202 -12.80170 -12.68173 -12.52000 -12.41609 -12.16681 -12.09432 -11.86853 -11.77205 -11.74525 -11.53585 -10.71633 -10.53805 -10.46466 -9.92867 -9.68497 -8.61346 -8.10745 -5.50554 1.25745 1.39191 1.49930 1.71482 1.90317 2.06032 2.43975 2.57852 3.09044 3.33792 3.55197 3.85999 4.00017 4.08832 4.14504 4.22881 4.26291 4.31885 4.33083 4.47591 4.53825 4.58831 4.63070 4.67428 4.70793 4.77435 4.84501 4.89993 4.98365 5.00372 5.02359 5.11295 5.18199 5.25804 5.40598 5.42048 5.52838 5.71934 5.99326 6.24577 6.56974 6.86621 6.96689 7.27033 7.62738 7.68016 8.13783 9.09757 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.005921 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.791924 B = 4727.807747 C = 5074.650972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.106 4.106 3 C -0.147 4.147 4 C 0.511 3.489 5 O -0.583 6.583 6 N -0.610 5.610 7 C 0.108 3.892 8 C -0.149 4.149 9 C 0.504 3.496 10 O -0.569 6.569 11 N -0.713 5.713 12 C 0.103 3.897 13 C 0.108 3.892 14 N -0.608 5.608 15 C -0.212 4.212 16 H 0.036 0.964 17 C -0.030 4.030 18 N -0.957 5.957 19 Si 0.951 3.049 20 H -0.269 1.269 21 H -0.315 1.315 22 H -0.270 1.270 23 C 0.159 3.841 24 C 0.108 3.892 25 H 0.042 0.958 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.411 0.589 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.071 0.929 41 H 0.258 0.742 42 H 0.069 0.931 43 H -0.001 1.001 44 H 0.086 0.914 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 12.485 -18.773 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.302 3.698 5 O -0.463 6.463 6 N -0.343 5.343 7 C -0.015 4.015 8 C -0.190 4.190 9 C 0.291 3.709 10 O -0.447 6.447 11 N -0.367 5.367 12 C -0.024 4.024 13 C -0.018 4.018 14 N -0.333 5.333 15 C -0.342 4.342 16 H 0.054 0.946 17 C -0.225 4.225 18 N -0.603 5.603 19 Si 0.781 3.219 20 H -0.196 1.196 21 H -0.244 1.244 22 H -0.195 1.195 23 C 0.033 3.967 24 C -0.015 4.015 25 H 0.061 0.939 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.133 0.867 36 H 0.247 0.753 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.017 0.983 44 H 0.105 0.895 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.599 12.140 -17.824 24.487 hybrid contribution -0.224 -1.107 1.149 1.611 sum -11.823 11.032 -16.675 23.228 Atomic orbital electron populations 1.21620 0.92599 1.02075 1.02526 1.21437 0.98088 0.98138 0.95031 1.21943 1.01585 0.92740 1.04087 1.21522 0.80499 0.78119 0.89708 1.90692 1.56318 1.57116 1.42144 1.48911 1.09037 1.54251 1.22100 1.22221 0.92896 0.98618 0.87717 1.22267 1.06703 0.90673 0.99313 1.21385 0.83563 0.86810 0.79102 1.90821 1.27328 1.81317 1.45188 1.45977 1.18693 1.14710 1.57286 1.21840 1.00987 0.85994 0.93623 1.22027 0.97143 0.90612 0.91973 1.44687 1.21764 1.11938 1.54914 1.18295 0.93505 0.99069 1.23369 0.94598 1.26045 0.97314 1.00735 0.98388 1.69993 1.17706 1.26997 1.45562 0.85743 0.80738 0.79328 0.76073 1.19615 1.24385 1.19503 1.21276 0.91765 0.85948 0.97669 1.22151 0.99392 0.91975 0.88031 0.93927 0.89062 0.93378 0.85740 0.91109 0.88231 0.93408 0.90979 0.84535 0.85251 0.86714 0.75280 0.93161 0.88546 0.94954 0.91076 0.93283 0.91285 0.98273 0.89532 0.94732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.58 71.98 0.62 -1.43 16 2 C -0.11 -1.59 2.48 -11.54 -0.03 -1.62 16 3 C -0.15 -1.61 8.86 71.98 0.64 -0.98 16 4 C 0.51 13.68 6.20 87.66 0.54 14.22 16 5 O -0.58 -21.33 14.63 -3.04 -0.04 -21.38 16 6 N -0.61 -17.06 2.44 -815.34 -1.99 -19.05 16 7 C 0.11 2.13 5.22 86.14 0.45 2.58 16 8 C -0.15 -2.64 6.12 29.85 0.18 -2.46 16 9 C 0.50 15.74 4.72 87.54 0.41 16.16 16 10 O -0.57 -25.47 14.88 -3.05 -0.05 -25.51 16 11 N -0.71 -20.04 4.71 -460.66 -2.17 -22.21 16 12 C 0.10 3.62 6.57 86.26 0.57 4.19 16 13 C 0.11 4.46 5.11 86.14 0.44 4.90 16 14 N -0.61 -29.37 1.83 -695.53 -1.27 -30.64 16 15 C -0.21 -12.51 9.12 84.03 0.77 -11.74 16 16 H 0.04 2.41 6.72 -2.91 -0.02 2.39 16 17 C -0.03 -1.84 5.40 84.86 0.46 -1.38 16 18 N -0.96 -62.91 13.97 21.65 0.30 -62.61 16 19 Si 0.95 48.81 24.90 68.60 1.71 50.52 16 20 H -0.27 -12.81 6.70 99.48 0.67 -12.14 16 21 H -0.31 -16.51 7.11 99.48 0.71 -15.81 16 22 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 23 C 0.16 6.89 4.53 86.14 0.39 7.28 16 24 C 0.11 4.35 4.84 86.14 0.42 4.77 16 25 H 0.04 0.86 7.95 -2.39 -0.02 0.84 16 26 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.12 1.08 6.38 -2.39 -0.02 1.06 16 29 H 0.07 0.72 5.48 -2.39 -0.01 0.70 16 30 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.07 1.77 7.83 -2.39 -0.02 1.75 16 33 H 0.14 1.48 4.55 -2.39 -0.01 1.47 16 34 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.11 1.16 6.54 -2.39 -0.02 1.14 16 36 H 0.41 8.07 8.70 -92.71 -0.81 7.26 16 37 H 0.05 2.30 7.02 -2.39 -0.02 2.28 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.03 1.48 3.04 -2.39 -0.01 1.48 16 40 H 0.07 2.53 7.77 -2.38 -0.02 2.51 16 41 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 42 H 0.07 2.71 6.09 -2.38 -0.01 2.69 16 43 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.09 4.05 4.06 -2.39 -0.01 4.04 16 45 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -86.18 331.62 2.51 -83.67 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.17 Total: 12.73 kcal Atomic # 6 Polarization: 28.63 SS G_CDS: 5.86 Total: 34.48 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -5.13 Total: -134.51 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.09 Total: -46.89 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 1.71 Total: 50.52 kcal Total: -86.18 2.51 -83.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070939674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.943 kcal (2) G-P(sol) polarization free energy of solvation -86.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds