Wall clock time and date at job start Tue Mar 31 2020 03:31:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52992 * 109.47213 * 2 1
4 4 C 1.53003 * 109.47340 * 120.00405 * 2 1 3
5 5 C 1.50698 * 109.47285 * 174.99565 * 4 2 1
6 6 O 1.21284 * 119.99641 * 0.02562 * 5 4 2
7 7 N 1.34766 * 120.00264 * 179.97438 * 5 4 2
8 8 C 1.47079 * 120.88484 * 180.02562 * 7 5 4
9 9 C 1.53244 * 108.52310 * 231.20917 * 8 7 5
10 10 N 1.46904 * 109.33584 * 306.16644 * 9 8 7
11 11 C 1.46898 * 110.99462 * 187.25026 * 10 9 8
12 12 C 1.50706 * 109.46984 * 170.00213 * 11 10 9
13 13 O 1.21295 * 119.99863 * 359.97438 * 12 11 10
14 14 N 1.34773 * 120.00080 * 180.02562 * 12 11 10
15 15 C 1.37105 * 119.99873 * 180.02562 * 14 12 11
16 16 H 1.08000 * 119.99509 * 359.71860 * 15 14 12
17 17 C 1.38950 * 120.00048 * 179.72298 * 15 14 12
18 18 N 1.31413 * 119.99930 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 119.99918 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47112 * 89.99702 * 19 17 15
21 21 H 1.48498 * 109.47011 * 209.99970 * 19 17 15
22 22 H 1.48499 * 109.47134 * 329.99591 * 19 17 15
23 23 C 1.46901 * 111.26921 * 63.10970 * 10 9 8
24 24 C 1.47077 * 120.88263 * 0.02775 * 7 5 4
25 25 H 1.09002 * 109.46812 * 299.99476 * 1 2 3
26 26 H 1.08997 * 109.47599 * 59.99857 * 1 2 3
27 27 H 1.09003 * 109.47341 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.46812 * 240.00524 * 2 1 3
29 29 H 1.09002 * 109.47433 * 179.97438 * 3 2 1
30 30 H 1.08999 * 109.47681 * 300.00687 * 3 2 1
31 31 H 1.09002 * 109.46804 * 60.00518 * 3 2 1
32 32 H 1.08998 * 109.46926 * 55.00012 * 4 2 1
33 33 H 1.08994 * 109.47093 * 294.99868 * 4 2 1
34 34 H 1.08994 * 109.63122 * 111.49886 * 8 7 5
35 35 H 1.09005 * 109.78855 * 351.00842 * 8 7 5
36 36 H 1.09001 * 109.49544 * 186.21029 * 9 8 7
37 37 H 1.08999 * 109.49090 * 66.12553 * 9 8 7
38 38 H 1.09004 * 109.47320 * 50.00617 * 11 10 9
39 39 H 1.09001 * 109.47291 * 289.99914 * 11 10 9
40 40 H 0.96996 * 119.99858 * 359.72084 * 14 12 11
41 41 H 0.96999 * 119.99993 * 179.97438 * 18 17 15
42 42 H 1.09001 * 109.49910 * 56.84429 * 23 10 9
43 43 H 1.08996 * 109.49354 * 176.93475 * 23 10 9
44 44 H 1.09003 * 109.63416 * 248.50478 * 24 7 5
45 45 H 1.09005 * 109.63033 * 9.08200 * 24 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5419 -0.8296 1.1888
6 8 4.1450 -0.3741 0.2402
7 7 4.2150 -1.4315 2.1892
8 6 5.6807 -1.5473 2.1505
9 6 6.0603 -3.0102 2.4039
10 7 5.4340 -3.4660 3.6522
11 6 5.9096 -4.8060 4.0210
12 6 5.4437 -5.1384 5.4151
13 8 4.7809 -4.3375 6.0401
14 7 5.7642 -6.3250 5.9678
15 6 5.3398 -6.6276 7.2359
16 1 4.7525 -5.9131 7.7936
17 6 5.6653 -7.8533 7.8036
18 7 6.3796 -8.7228 7.1248
19 14 5.0877 -8.2652 9.5316
20 1 3.7609 -8.9289 9.4650
21 1 6.0659 -9.1778 10.1762
22 1 4.9770 -7.0164 10.3274
23 6 3.9685 -3.4359 3.5550
24 6 3.5033 -1.9900 3.3488
25 1 -0.3633 0.5138 0.8901
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3634 -1.0277 0.0005
28 1 1.8933 -0.5138 -0.8901
29 1 3.1300 1.4425 0.0005
30 1 1.6766 1.9564 -0.8899
31 1 1.6767 1.9562 0.8901
32 1 1.6054 -1.7199 1.2950
33 1 1.7517 -0.1585 2.1369
34 1 6.1185 -0.9162 2.9238
35 1 6.0496 -1.2375 1.1726
36 1 7.1437 -3.0955 2.4883
37 1 5.7099 -3.6257 1.5753
38 1 6.9990 -4.8269 3.9874
39 1 5.5103 -5.5390 3.3200
40 1 6.2913 -6.9668 5.4667
41 1 6.6072 -9.5784 7.5212
42 1 3.6473 -4.0454 2.7103
43 1 3.5349 -3.8298 4.4741
44 1 3.7320 -1.4014 4.2373
45 1 2.4295 -1.9740 3.1621
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001112598141.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:31:36
Heat of formation + Delta-G solvation = -71.681694 kcal
Electronic energy + Delta-G solvation = -24459.133067 eV
Core-core repulsion = 20897.393976 eV
Total energy + Delta-G solvation = -3561.739091 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.37079 -38.78590 -37.41577 -35.70303 -34.51789 -33.80113 -31.31761 -31.25392
-29.29139 -27.94314 -27.27124 -25.60092 -23.86723 -23.64930 -21.53611 -20.29273
-19.29589 -18.76863 -17.91696 -17.18825 -16.30163 -15.99389 -15.73897 -15.08879
-14.89937 -14.75317 -14.54356 -14.12092 -14.03830 -13.94628 -13.66460 -13.59945
-13.05141 -12.52392 -12.49411 -12.31725 -12.10232 -11.96069 -11.62446 -11.55534
-11.39026 -11.19381 -11.16525 -11.13303 -11.00741 -10.87777 -10.81096 -10.42033
-10.25481 -9.69621 -9.51262 -8.85012 -8.39505 -8.02282 -7.92341 -6.45418
-3.86448 2.58015 2.92459 3.14838 3.24089 3.29618 3.84699 3.91934
4.19829 4.39139 4.55884 4.70996 4.84878 4.97595 5.02806 5.09299
5.20589 5.22237 5.29147 5.33848 5.37560 5.42104 5.42914 5.49504
5.52355 5.69899 5.71144 5.77320 5.80004 5.84458 5.87351 5.93747
6.11767 6.14995 6.18314 6.22129 6.26409 6.49414 7.11934 7.28079
7.40818 7.51584 8.02231 8.12965 8.57211 9.13993 9.50164 10.01259
10.72219
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.030538 B = 0.002737 C = 0.002594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 916.675241 B =10228.085112 C =10792.955793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.081 4.081
3 C -0.153 4.153
4 C -0.138 4.138
5 C 0.515 3.485
6 O -0.547 6.547
7 N -0.613 5.613
8 C 0.118 3.882
9 C 0.041 3.959
10 N -0.515 5.515
11 C 0.046 3.954
12 C 0.443 3.557
13 O -0.579 6.579
14 N -0.563 5.563
15 C -0.299 4.299
16 H 0.104 0.896
17 C 0.022 3.978
18 N -0.901 5.901
19 Si 0.930 3.070
20 H -0.278 1.278
21 H -0.284 1.284
22 H -0.269 1.269
23 C 0.038 3.962
24 C 0.114 3.886
25 H 0.055 0.945
26 H 0.056 0.944
27 H 0.054 0.946
28 H 0.076 0.924
29 H 0.074 0.926
30 H 0.050 0.950
31 H 0.047 0.953
32 H 0.092 0.908
33 H 0.093 0.907
34 H 0.075 0.925
35 H 0.092 0.908
36 H 0.086 0.914
37 H 0.034 0.966
38 H 0.090 0.910
39 H 0.047 0.953
40 H 0.392 0.608
41 H 0.272 0.728
42 H 0.027 0.973
43 H 0.116 0.884
44 H 0.082 0.918
45 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.534 12.481 -12.692 18.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.099 4.099
3 C -0.210 4.210
4 C -0.177 4.177
5 C 0.304 3.696
6 O -0.425 6.425
7 N -0.347 5.347
8 C -0.005 4.005
9 C -0.088 4.088
10 N -0.239 5.239
11 C -0.085 4.085
12 C 0.229 3.771
13 O -0.463 6.463
14 N -0.199 5.199
15 C -0.429 4.429
16 H 0.121 0.879
17 C -0.179 4.179
18 N -0.542 5.542
19 Si 0.757 3.243
20 H -0.204 1.204
21 H -0.209 1.209
22 H -0.194 1.194
23 C -0.090 4.090
24 C -0.009 4.009
25 H 0.074 0.926
26 H 0.075 0.925
27 H 0.073 0.927
28 H 0.094 0.906
29 H 0.093 0.907
30 H 0.069 0.931
31 H 0.066 0.934
32 H 0.111 0.889
33 H 0.111 0.889
34 H 0.093 0.907
35 H 0.111 0.889
36 H 0.105 0.895
37 H 0.052 0.948
38 H 0.108 0.892
39 H 0.065 0.935
40 H 0.225 0.775
41 H 0.082 0.918
42 H 0.045 0.955
43 H 0.134 0.866
44 H 0.100 0.900
45 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -6.449 13.391 -12.333 19.313
hybrid contribution -0.071 -1.478 0.056 1.480
sum -6.521 11.913 -12.277 18.307
Atomic orbital electron populations
1.21867 0.94996 1.01760 1.01929 1.20862 0.95006 0.96891 0.97180
1.21952 1.03148 0.94988 1.00892 1.21812 0.92166 1.02896 1.00874
1.20712 0.90213 0.77150 0.81558 1.90632 1.70435 1.48168 1.33252
1.48304 1.07647 1.57490 1.21260 1.21663 0.79715 0.96124 1.02952
1.22509 1.00077 0.95427 0.90811 1.61505 1.06517 1.25132 1.30768
1.21857 1.00979 0.89206 0.96454 1.19708 0.85850 0.83583 0.87994
1.90473 1.43086 1.49049 1.63731 1.41879 1.47890 1.14664 1.15503
1.19693 1.31275 1.01035 0.90870 0.87868 1.25272 0.96892 0.95654
1.00123 1.69611 1.38001 1.08389 1.38244 0.85857 0.78238 0.78517
0.81683 1.20421 1.20920 1.19382 1.22658 0.88324 0.95319 1.02711
1.21925 0.96071 0.94676 0.88203 0.92605 0.92464 0.92658 0.90563
0.90710 0.93082 0.93407 0.88945 0.88855 0.90720 0.88929 0.89549
0.94777 0.89180 0.93462 0.77480 0.91836 0.95526 0.86608 0.89998
0.89669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16
2 C -0.08 -0.74 2.57 -90.62 -0.23 -0.97 16
3 C -0.15 -1.47 8.93 37.15 0.33 -1.14 16
4 C -0.14 -1.28 3.54 -27.88 -0.10 -1.38 16
5 C 0.51 6.45 7.42 -10.99 -0.08 6.37 16
6 O -0.55 -8.32 13.42 5.55 0.07 -8.24 16
7 N -0.61 -7.67 3.01 -172.44 -0.52 -8.19 16
8 C 0.12 1.47 6.59 -3.60 -0.02 1.45 16
9 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16
10 N -0.51 -8.14 4.37 -235.73 -1.03 -9.17 16
11 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16
12 C 0.44 9.98 7.44 -10.98 -0.08 9.90 16
13 O -0.58 -14.71 13.91 5.54 0.08 -14.63 16
14 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16
15 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16
16 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16
17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
18 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16
19 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16
20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16
22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16
23 C 0.04 0.57 5.26 -3.68 -0.02 0.55 16
24 C 0.11 1.39 6.50 -3.58 -0.02 1.37 16
25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
28 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16
29 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16
30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
31 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
32 H 0.09 0.76 7.66 -51.93 -0.40 0.36 16
33 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16
34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16
35 H 0.09 1.15 7.07 -51.93 -0.37 0.78 16
36 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16
37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
38 H 0.09 1.40 7.97 -51.93 -0.41 0.98 16
39 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16
40 H 0.39 9.26 7.90 -40.82 -0.32 8.93 16
41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16
42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16
43 H 0.12 2.08 5.77 -51.93 -0.30 1.78 16
44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16
45 H 0.09 0.81 6.02 -51.93 -0.31 0.50 16
LS Contribution 356.78 15.07 5.38 5.38
Total: -1.00 -31.04 356.78 -7.96 -38.99
By element:
Atomic # 1 Polarization: 16.02 SS G_CDS: -7.40 Total: 8.62 kcal
Atomic # 6 Polarization: 9.09 SS G_CDS: -0.18 Total: 8.91 kcal
Atomic # 7 Polarization: -53.74 SS G_CDS: -0.88 Total: -54.63 kcal
Atomic # 8 Polarization: -23.03 SS G_CDS: 0.15 Total: -22.87 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -31.04 -7.96 -38.99 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112598141.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.688 kcal
(2) G-P(sol) polarization free energy of solvation -31.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.725 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.682 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds