Wall clock time and date at job start Tue Mar 31 2020 03:31:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52992 * 109.47213 * 2 1
4 4 C 1.53003 * 109.47340 * 120.00405 * 2 1 3
5 5 C 1.50698 * 109.47285 * 174.99565 * 4 2 1
6 6 O 1.21284 * 119.99641 * 0.02562 * 5 4 2
7 7 N 1.34766 * 120.00264 * 179.97438 * 5 4 2
8 8 C 1.47079 * 120.88484 * 180.02562 * 7 5 4
9 9 C 1.53244 * 108.52310 * 231.20917 * 8 7 5
10 10 N 1.46904 * 109.33584 * 306.16644 * 9 8 7
11 11 C 1.46898 * 110.99462 * 187.25026 * 10 9 8
12 12 C 1.50706 * 109.46984 * 170.00213 * 11 10 9
13 13 O 1.21295 * 119.99863 * 359.97438 * 12 11 10
14 14 N 1.34773 * 120.00080 * 180.02562 * 12 11 10
15 15 C 1.37105 * 119.99873 * 180.02562 * 14 12 11
16 16 H 1.08000 * 119.99509 * 359.71860 * 15 14 12
17 17 C 1.38950 * 120.00048 * 179.72298 * 15 14 12
18 18 N 1.31413 * 119.99930 * 359.97438 * 17 15 14
19 19 Si 1.86800 * 119.99918 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47112 * 89.99702 * 19 17 15
21 21 H 1.48498 * 109.47011 * 209.99970 * 19 17 15
22 22 H 1.48499 * 109.47134 * 329.99591 * 19 17 15
23 23 C 1.46901 * 111.26921 * 63.10970 * 10 9 8
24 24 C 1.47077 * 120.88263 * 0.02775 * 7 5 4
25 25 H 1.09002 * 109.46812 * 299.99476 * 1 2 3
26 26 H 1.08997 * 109.47599 * 59.99857 * 1 2 3
27 27 H 1.09003 * 109.47341 * 180.02562 * 1 2 3
28 28 H 1.09002 * 109.46812 * 240.00524 * 2 1 3
29 29 H 1.09002 * 109.47433 * 179.97438 * 3 2 1
30 30 H 1.08999 * 109.47681 * 300.00687 * 3 2 1
31 31 H 1.09002 * 109.46804 * 60.00518 * 3 2 1
32 32 H 1.08998 * 109.46926 * 55.00012 * 4 2 1
33 33 H 1.08994 * 109.47093 * 294.99868 * 4 2 1
34 34 H 1.08994 * 109.63122 * 111.49886 * 8 7 5
35 35 H 1.09005 * 109.78855 * 351.00842 * 8 7 5
36 36 H 1.09001 * 109.49544 * 186.21029 * 9 8 7
37 37 H 1.08999 * 109.49090 * 66.12553 * 9 8 7
38 38 H 1.09004 * 109.47320 * 50.00617 * 11 10 9
39 39 H 1.09001 * 109.47291 * 289.99914 * 11 10 9
40 40 H 0.96996 * 119.99858 * 359.72084 * 14 12 11
41 41 H 0.96999 * 119.99993 * 179.97438 * 18 17 15
42 42 H 1.09001 * 109.49910 * 56.84429 * 23 10 9
43 43 H 1.08996 * 109.49354 * 176.93475 * 23 10 9
44 44 H 1.09003 * 109.63416 * 248.50478 * 24 7 5
45 45 H 1.09005 * 109.63033 * 9.08200 * 24 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5419 -0.8296 1.1888
6 8 4.1450 -0.3741 0.2402
7 7 4.2150 -1.4315 2.1892
8 6 5.6807 -1.5473 2.1505
9 6 6.0603 -3.0102 2.4039
10 7 5.4340 -3.4660 3.6522
11 6 5.9096 -4.8060 4.0210
12 6 5.4437 -5.1384 5.4151
13 8 4.7809 -4.3375 6.0401
14 7 5.7642 -6.3250 5.9678
15 6 5.3398 -6.6276 7.2359
16 1 4.7525 -5.9131 7.7936
17 6 5.6653 -7.8533 7.8036
18 7 6.3796 -8.7228 7.1248
19 14 5.0877 -8.2652 9.5316
20 1 3.7609 -8.9289 9.4650
21 1 6.0659 -9.1778 10.1762
22 1 4.9770 -7.0164 10.3274
23 6 3.9685 -3.4359 3.5550
24 6 3.5033 -1.9900 3.3488
25 1 -0.3633 0.5138 0.8901
26 1 -0.3634 0.5138 -0.8899
27 1 -0.3634 -1.0277 0.0005
28 1 1.8933 -0.5138 -0.8901
29 1 3.1300 1.4425 0.0005
30 1 1.6766 1.9564 -0.8899
31 1 1.6767 1.9562 0.8901
32 1 1.6054 -1.7199 1.2950
33 1 1.7517 -0.1585 2.1369
34 1 6.1185 -0.9162 2.9238
35 1 6.0496 -1.2375 1.1726
36 1 7.1437 -3.0955 2.4883
37 1 5.7099 -3.6257 1.5753
38 1 6.9990 -4.8269 3.9874
39 1 5.5103 -5.5390 3.3200
40 1 6.2913 -6.9668 5.4667
41 1 6.6072 -9.5784 7.5212
42 1 3.6473 -4.0454 2.7103
43 1 3.5349 -3.8298 4.4741
44 1 3.7320 -1.4014 4.2373
45 1 2.4295 -1.9740 3.1621
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001112598141.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:31:35
Heat of formation + Delta-G solvation = -92.989575 kcal
Electronic energy + Delta-G solvation = -24460.057046 eV
Core-core repulsion = 20897.393976 eV
Total energy + Delta-G solvation = -3562.663070 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.40167 -40.30829 -38.77111 -36.51695 -36.02128 -35.39425 -33.25298 -32.31982
-30.46534 -28.96313 -27.93647 -27.16956 -25.40632 -24.71016 -22.55857 -21.16587
-20.99789 -19.90198 -19.70844 -18.19133 -17.78863 -17.06615 -16.77674 -16.60194
-16.34254 -16.09666 -15.66376 -15.42089 -15.31600 -15.27158 -14.78251 -14.66622
-14.24690 -13.87128 -13.51260 -13.31027 -13.23517 -13.02567 -12.95464 -12.78089
-12.72316 -12.41009 -12.40327 -12.24275 -12.15496 -12.09174 -11.96573 -11.71470
-11.55585 -11.42653 -10.67977 -10.32111 -9.98625 -9.73677 -9.21748 -8.44654
-5.92902 1.39256 1.43407 1.55727 1.62088 1.95925 2.07533 2.29585
2.73151 3.22507 3.37693 3.51526 3.83332 3.92070 3.98982 4.03626
4.14714 4.23856 4.25528 4.34123 4.45049 4.47849 4.52230 4.60848
4.67332 4.70523 4.72793 4.75507 4.85256 4.86113 4.93976 5.04726
5.06587 5.13046 5.29772 5.41323 5.43415 5.50871 5.52809 5.82414
6.05207 6.13918 6.42385 6.62435 7.15104 7.16187 7.59003 8.13916
8.72782
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.030538 B = 0.002737 C = 0.002594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 916.675241 B =10228.085112 C =10792.955793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.080 4.080
3 C -0.150 4.150
4 C -0.135 4.135
5 C 0.511 3.489
6 O -0.577 6.577
7 N -0.615 5.615
8 C 0.118 3.882
9 C 0.047 3.953
10 N -0.531 5.531
11 C 0.058 3.942
12 C 0.444 3.556
13 O -0.610 6.610
14 N -0.576 5.576
15 C -0.328 4.328
16 H 0.081 0.919
17 C -0.015 4.015
18 N -0.922 5.922
19 Si 0.992 3.008
20 H -0.271 1.271
21 H -0.274 1.274
22 H -0.272 1.272
23 C 0.040 3.960
24 C 0.123 3.877
25 H 0.064 0.936
26 H 0.060 0.940
27 H 0.061 0.939
28 H 0.058 0.942
29 H 0.047 0.953
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.109 0.891
33 H 0.111 0.889
34 H 0.073 0.927
35 H 0.093 0.907
36 H 0.103 0.897
37 H 0.037 0.963
38 H 0.111 0.889
39 H 0.065 0.935
40 H 0.395 0.605
41 H 0.276 0.724
42 H 0.034 0.966
43 H 0.083 0.917
44 H 0.073 0.927
45 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.375 12.644 -13.051 19.611
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.099 4.099
3 C -0.207 4.207
4 C -0.174 4.174
5 C 0.301 3.699
6 O -0.457 6.457
7 N -0.348 5.348
8 C -0.004 4.004
9 C -0.081 4.081
10 N -0.256 5.256
11 C -0.073 4.073
12 C 0.231 3.769
13 O -0.496 6.496
14 N -0.213 5.213
15 C -0.458 4.458
16 H 0.099 0.901
17 C -0.214 4.214
18 N -0.564 5.564
19 Si 0.815 3.185
20 H -0.197 1.197
21 H -0.198 1.198
22 H -0.197 1.197
23 C -0.089 4.089
24 C 0.000 4.000
25 H 0.083 0.917
26 H 0.079 0.921
27 H 0.081 0.919
28 H 0.077 0.923
29 H 0.066 0.934
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.127 0.873
33 H 0.129 0.871
34 H 0.092 0.908
35 H 0.111 0.889
36 H 0.121 0.879
37 H 0.056 0.944
38 H 0.129 0.871
39 H 0.082 0.918
40 H 0.229 0.771
41 H 0.086 0.914
42 H 0.052 0.948
43 H 0.102 0.898
44 H 0.091 0.909
45 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -7.287 13.555 -12.710 19.960
hybrid contribution 0.202 -1.455 0.111 1.473
sum -7.086 12.100 -12.599 18.850
Atomic orbital electron populations
1.21822 0.93142 1.02466 1.02608 1.20850 0.96440 0.96186 0.96415
1.21910 1.01360 0.95744 1.01733 1.21888 0.89650 1.04198 1.01679
1.21294 0.91492 0.76260 0.80807 1.90626 1.71350 1.49369 1.34368
1.48376 1.07687 1.57395 1.21347 1.21641 0.80054 0.95865 1.02881
1.22529 1.00850 0.95373 0.89370 1.61489 1.07185 1.24251 1.32702
1.21726 1.02113 0.90551 0.92923 1.20666 0.84225 0.82305 0.89674
1.90455 1.44086 1.49780 1.65247 1.41952 1.48625 1.15607 1.15113
1.19656 1.32444 1.01424 0.92280 0.90064 1.26026 0.96694 0.95115
1.03577 1.69676 1.38414 1.08682 1.39589 0.84943 0.78156 0.78121
0.77238 1.19652 1.19846 1.19678 1.22563 0.87901 0.97121 1.01268
1.21871 0.97666 0.92628 0.87834 0.91674 0.92081 0.91947 0.92309
0.93370 0.92470 0.92369 0.87254 0.87054 0.90829 0.88911 0.87899
0.94445 0.87107 0.91758 0.77131 0.91412 0.94769 0.89836 0.90887
0.86659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16
2 C -0.08 -1.34 2.57 -10.80 -0.03 -1.37 16
3 C -0.15 -2.74 8.93 71.98 0.64 -2.10 16
4 C -0.13 -2.20 3.54 29.85 0.11 -2.10 16
5 C 0.51 12.11 7.42 87.66 0.65 12.76 16
6 O -0.58 -17.30 13.42 -3.04 -0.04 -17.34 16
7 N -0.61 -14.47 3.01 -817.87 -2.46 -16.93 16
8 C 0.12 2.80 6.59 86.35 0.57 3.37 16
9 C 0.05 1.12 5.62 86.38 0.49 1.60 16
10 N -0.53 -16.14 4.37 -899.70 -3.93 -20.07 16
11 C 0.06 1.91 5.45 85.56 0.47 2.38 16
12 C 0.44 20.10 7.44 87.66 0.65 20.76 16
13 O -0.61 -31.55 13.91 -3.08 -0.04 -31.60 16
14 N -0.58 -28.61 5.29 -306.97 -1.62 -30.23 16
15 C -0.33 -18.13 9.68 84.04 0.81 -17.31 16
16 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16
17 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16
18 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16
19 Si 0.99 42.13 29.55 68.60 2.03 44.16 16
20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16
21 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
23 C 0.04 1.16 5.26 86.40 0.45 1.61 16
24 C 0.12 2.79 6.50 86.36 0.56 3.36 16
25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
28 H 0.06 1.19 7.96 -2.39 -0.02 1.17 16
29 H 0.05 1.15 5.95 -2.39 -0.01 1.13 16
30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
32 H 0.11 1.45 7.66 -2.39 -0.02 1.43 16
33 H 0.11 1.45 8.00 -2.39 -0.02 1.44 16
34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
35 H 0.09 2.22 7.07 -2.38 -0.02 2.20 16
36 H 0.10 2.11 7.99 -2.39 -0.02 2.09 16
37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16
38 H 0.11 3.21 7.97 -2.39 -0.02 3.19 16
39 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16
40 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16
41 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16
42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16
43 H 0.08 3.01 5.77 -2.39 -0.01 2.99 16
44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
45 H 0.12 1.90 6.02 -2.38 -0.01 1.88 16
Total: -1.00 -67.53 356.78 0.96 -66.57
By element:
Atomic # 1 Polarization: 32.44 SS G_CDS: 0.25 Total: 32.69 kcal
Atomic # 6 Polarization: 15.11 SS G_CDS: 6.50 Total: 21.61 kcal
Atomic # 7 Polarization: -108.36 SS G_CDS: -7.73 Total: -116.10 kcal
Atomic # 8 Polarization: -48.85 SS G_CDS: -0.08 Total: -48.93 kcal
Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal
Total: -67.53 0.96 -66.57 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112598141.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.419 kcal
(2) G-P(sol) polarization free energy of solvation -67.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.953 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds