Wall clock time and date at job start Tue Mar 31 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47111 * 2 1 4 4 H 1.09000 * 109.46630 * 305.00311 * 3 2 1 5 5 C 1.53001 * 109.47010 * 65.00097 * 3 2 1 6 6 C 1.50698 * 109.46820 * 185.00375 * 3 2 1 7 7 O 1.21276 * 120.00420 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99787 * 179.97438 * 6 3 2 9 9 C 1.46495 * 120.00165 * 179.97438 * 8 6 3 10 10 C 1.50707 * 109.47123 * 180.02562 * 9 8 6 11 11 O 1.21275 * 120.00197 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99596 * 180.02562 * 10 9 8 13 13 C 1.46969 * 120.59184 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63823 * 235.24762 * 13 12 10 15 15 N 1.46971 * 108.63406 * 310.57818 * 14 13 12 16 16 C 1.36933 * 120.58954 * 235.20080 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84704 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57456 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46964 * 118.81046 * 55.47559 * 15 14 13 25 25 C 1.46965 * 120.59893 * 0.02562 * 12 10 9 26 26 H 1.09002 * 109.46866 * 300.00102 * 1 2 3 27 27 H 1.08999 * 109.47294 * 59.99988 * 1 2 3 28 28 H 1.09001 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47075 * 240.00346 * 2 1 3 30 30 H 1.08999 * 109.47294 * 120.00012 * 2 1 3 31 31 H 1.08992 * 109.47143 * 300.00005 * 5 3 2 32 32 H 1.08996 * 109.46609 * 60.00269 * 5 3 2 33 33 H 1.09001 * 109.46547 * 180.02562 * 5 3 2 34 34 H 0.97004 * 119.99634 * 0.02562 * 8 6 3 35 35 H 1.09008 * 109.47202 * 60.00412 * 9 8 6 36 36 H 1.09003 * 109.47331 * 300.00358 * 9 8 6 37 37 H 1.09001 * 109.60759 * 115.50025 * 13 12 10 38 38 H 1.08997 * 109.60686 * 354.99512 * 13 12 10 39 39 H 1.08993 * 109.61301 * 190.83327 * 14 13 12 40 40 H 1.09004 * 109.75220 * 70.40370 * 14 13 12 41 41 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.60931 * 64.27031 * 24 15 14 43 43 H 1.09004 * 109.60392 * 184.78099 * 24 15 14 44 44 H 1.09002 * 109.60509 * 244.49992 * 25 12 10 45 45 H 1.09000 * 109.60856 * 4.83277 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1450 0.3952 -0.2039 8 7 4.2148 2.6118 -0.1459 9 6 5.6749 2.6136 -0.2658 10 6 6.1772 4.0345 -0.2659 11 8 5.3929 4.9549 -0.1744 12 7 7.4981 4.2822 -0.3678 13 6 8.0022 5.6627 -0.3698 14 6 8.8474 5.8740 -1.6320 15 7 9.8093 4.7685 -1.7436 16 6 11.1513 5.0203 -1.8480 17 1 11.8663 4.2967 -1.4851 18 6 11.5927 6.2029 -2.4254 19 7 10.7741 6.9190 -3.1665 20 14 13.3486 6.7781 -2.1503 21 1 14.0597 5.8017 -1.2865 22 1 14.0459 6.8818 -3.4573 23 1 13.3361 8.1077 -1.4891 24 6 9.3047 3.3882 -1.7473 25 6 8.4600 3.1767 -0.4800 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5490 2.1253 1.3970 32 1 2.0699 1.5875 2.1491 33 1 1.9982 3.1544 1.3071 34 1 3.7324 3.4509 -0.0816 35 1 5.9636 2.1257 -1.1969 36 1 6.1093 2.0751 0.5764 37 1 8.6175 5.8287 0.5145 38 1 7.1632 6.3585 -0.3706 39 1 9.3840 6.8198 -1.5589 40 1 8.2014 5.8869 -2.5100 41 1 11.0827 7.7453 -3.5703 42 1 8.6887 3.2263 -2.6318 43 1 10.1435 2.6921 -1.7502 44 1 9.1080 3.1654 0.3965 45 1 7.9234 2.2306 -0.5504 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113644049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:58 Heat of formation + Delta-G solvation = -56.698452 kcal Electronic energy + Delta-G solvation = -24460.394963 eV Core-core repulsion = 20899.305594 eV Total energy + Delta-G solvation = -3561.089369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37784 -39.43746 -36.99034 -35.68465 -34.52814 -34.02584 -31.27540 -30.80959 -30.08672 -28.01100 -26.60713 -25.38516 -23.70144 -22.88708 -21.87493 -20.64314 -20.06286 -18.80538 -17.70080 -16.83949 -16.37266 -16.09614 -15.73124 -15.36756 -15.25106 -14.81833 -14.37328 -14.12946 -13.77289 -13.73318 -13.60947 -13.35003 -13.15240 -12.91064 -12.72283 -12.41217 -12.21079 -11.93034 -11.85230 -11.79224 -11.29793 -11.08941 -10.94707 -10.89111 -10.81298 -10.60410 -10.32209 -10.04129 -9.93178 -9.89008 -9.58045 -9.24115 -8.66420 -8.37778 -6.78094 -5.90055 -3.35663 2.51370 2.74088 2.83687 3.30976 3.39206 3.40945 3.46348 4.39231 4.43750 4.50679 4.59478 4.64741 5.02991 5.09427 5.16379 5.20594 5.26302 5.27497 5.29257 5.37945 5.53864 5.60837 5.64400 5.67762 5.68455 5.80355 5.82088 5.97352 6.00608 6.08867 6.19242 6.25282 6.31088 6.41572 6.61966 6.75653 7.16159 7.39816 7.46971 7.67608 7.72101 8.09928 8.30419 8.31045 9.06619 9.69166 10.25497 11.17554 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.002695 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.304872 B =10386.389796 C =10685.897544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.110 4.110 4 H 0.098 0.902 5 C -0.147 4.147 6 C 0.517 3.483 7 O -0.543 6.543 8 N -0.716 5.716 9 C 0.101 3.899 10 C 0.504 3.496 11 O -0.556 6.556 12 N -0.589 5.589 13 C 0.087 3.913 14 C 0.158 3.842 15 N -0.591 5.591 16 C -0.258 4.258 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.130 3.870 25 C 0.084 3.916 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.411 0.589 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.024 0.976 41 H 0.255 0.745 42 H 0.025 0.975 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.503 -9.643 7.663 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.131 4.131 4 H 0.116 0.884 5 C -0.205 4.205 6 C 0.304 3.696 7 O -0.420 6.420 8 N -0.371 5.371 9 C -0.026 4.026 10 C 0.290 3.710 11 O -0.436 6.436 12 N -0.321 5.321 13 C -0.036 4.036 14 C 0.031 3.969 15 N -0.314 5.314 16 C -0.387 4.387 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.214 1.214 24 C 0.003 3.997 25 C -0.040 4.040 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.375 -9.737 7.554 20.494 hybrid contribution 0.859 0.790 -0.008 1.167 sum -15.516 -8.947 7.546 19.435 Atomic orbital electron populations 1.21847 0.95486 1.01876 1.01908 1.21344 0.95317 0.94095 1.03549 1.21344 0.91437 0.99522 1.00793 0.88356 1.21845 1.02366 1.00504 0.95738 1.20703 0.90109 0.83167 0.75635 1.90697 1.70342 1.31415 1.49577 1.45795 1.06648 1.09882 1.74800 1.21107 0.81928 0.95219 1.04381 1.20376 0.82843 0.90612 0.77120 1.90633 1.54888 1.46024 1.52031 1.48031 1.05023 1.09073 1.69941 1.22568 0.98437 0.80899 1.01701 1.21200 0.90257 0.94141 0.91270 1.44033 1.03350 0.99082 1.84941 1.19231 0.81952 1.04256 1.33280 0.91337 1.25102 0.97858 0.99863 0.96716 1.70023 1.35425 1.16275 1.32726 0.86196 0.84254 0.78567 0.77570 1.20162 1.21650 1.21435 1.21360 0.96074 0.89181 0.93104 1.22560 0.91946 0.87980 1.01554 0.92427 0.92667 0.92480 0.91067 0.91297 0.91108 0.92035 0.91894 0.75092 0.88432 0.88664 0.91893 0.90007 0.88123 0.95794 0.93444 0.95727 0.91214 0.91089 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.11 -0.90 4.75 -26.73 -0.13 -1.03 16 3 C -0.11 -0.96 2.72 -91.77 -0.25 -1.21 16 4 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.15 -1.06 8.85 37.16 0.33 -0.73 16 6 C 0.52 6.31 7.15 -10.99 -0.08 6.24 16 7 O -0.54 -8.40 15.92 5.56 0.09 -8.31 16 8 N -0.72 -8.76 5.42 -61.47 -0.33 -9.10 16 9 C 0.10 1.33 4.50 -5.19 -0.02 1.31 16 10 C 0.50 8.15 7.77 -10.98 -0.09 8.06 16 11 O -0.56 -10.24 15.07 5.56 0.08 -10.16 16 12 N -0.59 -10.11 2.95 -172.24 -0.51 -10.62 16 13 C 0.09 1.68 6.59 -3.60 -0.02 1.65 16 14 C 0.16 3.65 5.51 -3.60 -0.02 3.63 16 15 N -0.59 -14.05 2.96 -171.80 -0.51 -14.56 16 16 C -0.26 -6.72 9.57 -15.06 -0.14 -6.87 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 18 C 0.00 0.10 4.91 -17.44 -0.09 0.01 16 19 N -0.90 -25.37 11.20 55.49 0.62 -24.74 16 20 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 24 C 0.13 2.50 6.70 -3.39 -0.02 2.48 16 25 C 0.08 1.31 6.52 -3.39 -0.02 1.29 16 26 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.69 7.96 -51.93 -0.41 0.28 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 34 H 0.41 4.80 6.86 -40.82 -0.28 4.52 16 35 H 0.10 1.28 7.72 -51.92 -0.40 0.88 16 36 H 0.10 1.17 7.91 -51.93 -0.41 0.76 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.57 6.99 -51.93 -0.36 1.20 16 39 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 0.93 5.91 -51.93 -0.31 0.63 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -31.29 357.08 -7.73 -39.02 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.33 Total: 2.96 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -0.19 Total: 14.21 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.73 Total: -59.02 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.29 -7.73 -39.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113644049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.680 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds