Wall clock time and date at job start Tue Mar 31 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47111 * 2 1 4 4 H 1.09000 * 109.46630 * 305.00311 * 3 2 1 5 5 C 1.53001 * 109.47010 * 65.00097 * 3 2 1 6 6 C 1.50698 * 109.46820 * 185.00375 * 3 2 1 7 7 O 1.21276 * 120.00420 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99787 * 179.97438 * 6 3 2 9 9 C 1.46495 * 120.00165 * 179.97438 * 8 6 3 10 10 C 1.50707 * 109.47123 * 180.02562 * 9 8 6 11 11 O 1.21275 * 120.00197 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99596 * 180.02562 * 10 9 8 13 13 C 1.46969 * 120.59184 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63823 * 235.24762 * 13 12 10 15 15 N 1.46971 * 108.63406 * 310.57818 * 14 13 12 16 16 C 1.36933 * 120.58954 * 235.20080 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84704 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57456 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46964 * 118.81046 * 55.47559 * 15 14 13 25 25 C 1.46965 * 120.59893 * 0.02562 * 12 10 9 26 26 H 1.09002 * 109.46866 * 300.00102 * 1 2 3 27 27 H 1.08999 * 109.47294 * 59.99988 * 1 2 3 28 28 H 1.09001 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47075 * 240.00346 * 2 1 3 30 30 H 1.08999 * 109.47294 * 120.00012 * 2 1 3 31 31 H 1.08992 * 109.47143 * 300.00005 * 5 3 2 32 32 H 1.08996 * 109.46609 * 60.00269 * 5 3 2 33 33 H 1.09001 * 109.46547 * 180.02562 * 5 3 2 34 34 H 0.97004 * 119.99634 * 0.02562 * 8 6 3 35 35 H 1.09008 * 109.47202 * 60.00412 * 9 8 6 36 36 H 1.09003 * 109.47331 * 300.00358 * 9 8 6 37 37 H 1.09001 * 109.60759 * 115.50025 * 13 12 10 38 38 H 1.08997 * 109.60686 * 354.99512 * 13 12 10 39 39 H 1.08993 * 109.61301 * 190.83327 * 14 13 12 40 40 H 1.09004 * 109.75220 * 70.40370 * 14 13 12 41 41 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.60931 * 64.27031 * 24 15 14 43 43 H 1.09004 * 109.60392 * 184.78099 * 24 15 14 44 44 H 1.09002 * 109.60509 * 244.49992 * 25 12 10 45 45 H 1.09000 * 109.60856 * 4.83277 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1450 0.3952 -0.2039 8 7 4.2148 2.6118 -0.1459 9 6 5.6749 2.6136 -0.2658 10 6 6.1772 4.0345 -0.2659 11 8 5.3929 4.9549 -0.1744 12 7 7.4981 4.2822 -0.3678 13 6 8.0022 5.6627 -0.3698 14 6 8.8474 5.8740 -1.6320 15 7 9.8093 4.7685 -1.7436 16 6 11.1513 5.0203 -1.8480 17 1 11.8663 4.2967 -1.4851 18 6 11.5927 6.2029 -2.4254 19 7 10.7741 6.9190 -3.1665 20 14 13.3486 6.7781 -2.1503 21 1 14.0597 5.8017 -1.2865 22 1 14.0459 6.8818 -3.4573 23 1 13.3361 8.1077 -1.4891 24 6 9.3047 3.3882 -1.7473 25 6 8.4600 3.1767 -0.4800 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5490 2.1253 1.3970 32 1 2.0699 1.5875 2.1491 33 1 1.9982 3.1544 1.3071 34 1 3.7324 3.4509 -0.0816 35 1 5.9636 2.1257 -1.1969 36 1 6.1093 2.0751 0.5764 37 1 8.6175 5.8287 0.5145 38 1 7.1632 6.3585 -0.3706 39 1 9.3840 6.8198 -1.5589 40 1 8.2014 5.8869 -2.5100 41 1 11.0827 7.7453 -3.5703 42 1 8.6887 3.2263 -2.6318 43 1 10.1435 2.6921 -1.7502 44 1 9.1080 3.1654 0.3965 45 1 7.9234 2.2306 -0.5504 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113644049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:57 Heat of formation + Delta-G solvation = -77.444306 kcal Electronic energy + Delta-G solvation = -24461.294570 eV Core-core repulsion = 20899.305594 eV Total energy + Delta-G solvation = -3561.988977 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53205 -40.61985 -38.55049 -36.41401 -35.72301 -35.60262 -33.11544 -32.26448 -30.89726 -29.29806 -28.09687 -26.10874 -25.40068 -24.41674 -22.81355 -22.11677 -20.98203 -20.22707 -18.96043 -18.25071 -17.71334 -17.24483 -16.98419 -16.64885 -16.46102 -16.23812 -15.50963 -15.39795 -15.28047 -15.14528 -14.99952 -14.41872 -14.34997 -14.16807 -13.69539 -13.41230 -13.36022 -13.16107 -12.94780 -12.69670 -12.54847 -12.50728 -12.48377 -12.27791 -12.04781 -11.89105 -11.70118 -11.68637 -11.56710 -11.00074 -10.84440 -10.63224 -10.26504 -9.90183 -8.68701 -7.90178 -5.38819 1.41478 1.47439 1.49708 1.59026 1.59554 1.69691 2.31042 2.50280 3.25303 3.31162 3.57355 3.67889 3.87504 4.00104 4.18819 4.21269 4.24375 4.28353 4.37730 4.43471 4.49710 4.54860 4.63735 4.64410 4.75378 4.76809 4.81375 4.97787 5.03399 5.04975 5.13553 5.19423 5.22060 5.26757 5.39394 5.41849 5.52828 5.58527 5.65279 6.34159 6.36351 6.45066 6.96218 7.08413 7.14950 7.77468 8.30233 9.15356 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.043856 B = 0.002695 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.304872 B =10386.389796 C =10685.897544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.105 4.105 4 H 0.115 0.885 5 C -0.144 4.144 6 C 0.516 3.484 7 O -0.578 6.578 8 N -0.714 5.714 9 C 0.108 3.892 10 C 0.507 3.493 11 O -0.578 6.578 12 N -0.595 5.595 13 C 0.104 3.896 14 C 0.168 3.832 15 N -0.609 5.609 16 C -0.261 4.261 17 H 0.076 0.924 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.968 3.032 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.124 3.876 25 C 0.095 3.905 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.415 0.585 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.070 0.930 40 H -0.007 1.007 41 H 0.251 0.749 42 H 0.016 0.984 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.442 -10.979 9.053 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.126 4.126 4 H 0.133 0.867 5 C -0.201 4.201 6 C 0.304 3.696 7 O -0.458 6.458 8 N -0.369 5.369 9 C -0.020 4.020 10 C 0.295 3.705 11 O -0.459 6.459 12 N -0.327 5.327 13 C -0.020 4.020 14 C 0.041 3.959 15 N -0.333 5.333 16 C -0.390 4.390 17 H 0.093 0.907 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.223 1.223 23 H -0.218 1.218 24 C -0.002 4.002 25 C -0.028 4.028 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.254 0.746 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.011 0.989 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.334 -11.108 8.967 22.455 hybrid contribution 1.108 1.151 -0.473 1.666 sum -16.226 -9.957 8.493 20.846 Atomic orbital electron populations 1.21819 0.93554 1.02473 1.02796 1.21323 0.96928 0.93696 1.02240 1.21411 0.88813 1.00060 1.02340 0.86707 1.21846 1.03674 1.00139 0.94429 1.21332 0.91442 0.82369 0.74446 1.90681 1.71319 1.32521 1.51244 1.45834 1.06256 1.10227 1.74607 1.21067 0.82719 0.92840 1.05331 1.20826 0.82073 0.91645 0.75909 1.90626 1.55351 1.47177 1.52790 1.48059 1.05847 1.08432 1.70349 1.22149 0.97735 0.82577 0.99564 1.20908 0.89849 0.93129 0.91973 1.44291 1.02911 1.00920 1.85172 1.19591 0.83279 1.04173 1.32006 0.90668 1.25855 1.01429 1.00362 0.97031 1.70177 1.37194 1.16597 1.34307 0.85195 0.80102 0.77958 0.77078 1.18717 1.22269 1.21799 1.21564 0.96947 0.86945 0.94733 1.22529 0.91673 0.88903 0.99718 0.91275 0.91981 0.92124 0.92718 0.92355 0.89066 0.92642 0.91771 0.74646 0.87882 0.87013 0.91242 0.90168 0.91150 0.98861 0.94036 0.96570 0.90079 0.89999 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.10 -1.63 4.75 30.60 0.15 -1.48 16 3 C -0.11 -1.63 2.72 -11.54 -0.03 -1.66 16 4 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.14 -1.72 8.85 71.98 0.64 -1.09 16 6 C 0.52 11.76 7.15 87.66 0.63 12.38 16 7 O -0.58 -17.18 15.92 -3.02 -0.05 -17.23 16 8 N -0.71 -16.10 5.42 -466.78 -2.53 -18.63 16 9 C 0.11 2.59 4.50 85.64 0.38 2.97 16 10 C 0.51 15.50 7.77 87.66 0.68 16.18 16 11 O -0.58 -20.59 15.07 -3.02 -0.05 -20.64 16 12 N -0.60 -19.49 2.95 -817.25 -2.41 -21.89 16 13 C 0.10 3.97 6.59 86.41 0.57 4.54 16 14 C 0.17 7.98 5.51 86.41 0.48 8.45 16 15 N -0.61 -29.00 2.96 -697.46 -2.06 -31.07 16 16 C -0.26 -13.56 9.57 84.03 0.80 -12.76 16 17 H 0.08 3.75 7.89 -2.91 -0.02 3.72 16 18 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 19 N -0.94 -54.38 11.20 21.65 0.24 -54.14 16 20 Si 0.97 43.46 29.59 68.60 2.03 45.49 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 C 0.12 4.61 6.70 86.55 0.58 5.19 16 25 C 0.10 2.72 6.52 86.55 0.56 3.28 16 26 H 0.07 0.57 6.57 -2.39 -0.02 0.55 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 1.03 7.96 -2.39 -0.02 1.01 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.74 6.56 -2.39 -0.02 0.73 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.77 7.57 -2.39 -0.02 0.75 16 34 H 0.41 8.92 6.86 -92.71 -0.64 8.28 16 35 H 0.10 2.44 7.72 -2.38 -0.02 2.42 16 36 H 0.11 2.38 7.91 -2.39 -0.02 2.37 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.08 3.08 6.99 -2.39 -0.02 3.06 16 39 H 0.07 3.76 6.00 -2.39 -0.01 3.75 16 40 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 41 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 45 H 0.11 2.39 5.91 -2.39 -0.01 2.38 16 Total: -1.00 -68.48 357.08 2.07 -66.41 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.35 Total: 18.91 kcal Atomic # 6 Polarization: 26.24 SS G_CDS: 6.55 Total: 32.79 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -6.76 Total: -125.73 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.09 Total: -37.86 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -68.48 2.07 -66.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113644049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.036 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds