Wall clock time and date at job start Tue Mar 31 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47602 * 2 1 4 4 N 1.46506 * 109.47100 * 119.99752 * 2 1 3 5 5 C 1.34773 * 119.99969 * 154.71955 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.46889 * 109.47109 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99928 * 294.29930 * 8 7 5 10 10 C 1.53241 * 109.33809 * 172.74808 * 9 8 7 11 11 N 1.47086 * 108.51937 * 53.83507 * 10 9 8 12 12 C 1.34772 * 120.87967 * 128.79449 * 11 10 9 13 13 O 1.21284 * 119.99986 * 180.02562 * 12 11 10 14 14 C 1.50698 * 120.00373 * 0.02562 * 12 11 10 15 15 C 1.50697 * 109.47179 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00135 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00022 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00202 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99802 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46960 * 90.00468 * 19 17 15 21 21 H 1.48505 * 109.46855 * 210.00383 * 19 17 15 22 22 H 1.48498 * 109.47198 * 330.00088 * 19 17 15 23 23 C 1.47079 * 118.23440 * 308.80912 * 11 10 9 24 24 C 1.46904 * 110.99974 * 170.00183 * 8 7 5 25 25 H 1.09001 * 109.47077 * 300.00924 * 1 2 3 26 26 H 1.09002 * 109.47012 * 60.00129 * 1 2 3 27 27 H 1.08996 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47163 * 239.99851 * 2 1 3 29 29 H 1.09001 * 109.47659 * 59.99432 * 3 2 1 30 30 H 1.08995 * 109.47574 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46832 * 299.99981 * 3 2 1 32 32 H 0.97005 * 119.99811 * 335.00008 * 4 2 1 33 33 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 34 34 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 35 35 H 1.08997 * 109.49012 * 292.70693 * 9 8 7 36 36 H 1.08996 * 109.49247 * 52.79249 * 9 8 7 37 37 H 1.08997 * 109.63227 * 294.11912 * 10 9 8 38 38 H 1.09003 * 109.62558 * 173.53938 * 10 9 8 39 39 H 1.08998 * 109.46774 * 299.99825 * 14 12 11 40 40 H 1.08994 * 109.47302 * 60.00005 * 14 12 11 41 41 H 0.96994 * 120.00307 * 179.97438 * 18 17 15 42 42 H 1.09006 * 109.63047 * 291.47633 * 23 11 10 43 43 H 1.09005 * 109.78552 * 170.99455 * 23 11 10 44 44 H 1.09001 * 109.48876 * 307.21059 * 24 8 7 45 45 H 1.09003 * 109.49296 * 67.28810 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2379 -1.2640 1.1926 6 8 3.9314 -1.2080 0.1992 7 6 3.7401 -1.9749 2.4229 8 7 5.0842 -2.5086 2.1658 9 6 5.0464 -3.5577 1.1382 10 6 6.4786 -3.9591 0.7697 11 7 7.1940 -4.3217 2.0027 12 6 7.8616 -5.4886 2.0973 13 8 8.4457 -5.7718 3.1218 14 6 7.8824 -6.4417 0.9302 15 6 8.6902 -7.6614 1.2919 16 1 9.1429 -7.7388 2.2694 17 6 8.8505 -8.6789 0.3753 18 7 9.5550 -9.7435 0.6912 19 14 8.0657 -8.5458 -1.3146 20 1 9.0137 -7.8891 -2.2502 21 1 7.7366 -9.9044 -1.8158 22 1 6.8230 -7.7382 -1.2211 23 6 7.1611 -3.3772 3.1296 24 6 5.7021 -2.9987 3.4052 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.4621 -0.7386 1.9896 33 1 3.7812 -1.2736 3.2564 34 1 3.0647 -2.7939 2.6703 35 1 4.5132 -4.4263 1.5247 36 1 4.5350 -3.1810 0.2524 37 1 6.9814 -3.1207 0.2877 38 1 6.4569 -4.8142 0.0941 39 1 6.8628 -6.7406 0.6871 40 1 8.3324 -5.9502 0.0677 41 1 9.6675 -10.4595 0.0465 42 1 7.7296 -2.4827 2.8745 43 1 7.5918 -3.8444 4.0153 44 1 5.6661 -2.2165 4.1634 45 1 5.1597 -3.8751 3.7601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:44 Heat of formation + Delta-G solvation = -59.955681 kcal Electronic energy + Delta-G solvation = -24511.919550 eV Core-core repulsion = 20950.688937 eV Total energy + Delta-G solvation = -3561.230613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36933 -39.35081 -37.50233 -36.14399 -34.14370 -32.87153 -32.02644 -31.24585 -29.60403 -28.59487 -27.65362 -25.32887 -23.85885 -22.86330 -21.76351 -20.78498 -20.63741 -18.37150 -17.35678 -17.10269 -16.58990 -15.95778 -15.78648 -15.31719 -14.99302 -14.85386 -14.74130 -14.62088 -14.25270 -14.05998 -13.48916 -13.42693 -13.05309 -12.89411 -12.77333 -12.54836 -12.23434 -12.17356 -11.99795 -11.79100 -11.45509 -11.39325 -11.22902 -11.15315 -11.04464 -10.72748 -10.53404 -9.95900 -9.91155 -9.41459 -9.18844 -8.72107 -8.57560 -8.54551 -8.06081 -6.00203 -3.99544 2.42278 2.72524 3.29249 3.35374 3.37132 3.51010 3.59373 3.86355 4.34142 4.43609 4.56283 4.62235 4.80765 4.83835 4.95084 4.99876 5.07906 5.12997 5.25894 5.30107 5.33750 5.34700 5.37352 5.46072 5.50051 5.60995 5.67643 5.74875 5.84707 5.89533 6.02417 6.13278 6.20385 6.22544 6.62561 6.71575 6.89079 6.94825 7.04475 7.21772 7.58343 8.01507 8.07240 8.58723 9.11980 9.20670 9.58493 11.12870 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003180 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.079327 B = 8802.757126 C = 9740.422415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.163 4.163 4 N -0.733 5.733 5 C 0.514 3.486 6 O -0.516 6.516 7 C 0.036 3.964 8 N -0.520 5.520 9 C 0.037 3.963 10 C 0.119 3.881 11 N -0.632 5.632 12 C 0.525 3.475 13 O -0.534 6.534 14 C -0.027 4.027 15 C -0.511 4.511 16 H 0.092 0.908 17 C 0.068 3.932 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.118 3.882 24 C 0.044 3.956 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.264 0.736 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.176 22.652 0.798 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.222 4.222 4 N -0.387 5.387 5 C 0.300 3.700 6 O -0.390 6.390 7 C -0.095 4.095 8 N -0.245 5.245 9 C -0.091 4.091 10 C -0.005 4.005 11 N -0.369 5.369 12 C 0.316 3.684 13 O -0.408 6.408 14 C -0.067 4.067 15 C -0.550 4.550 16 H 0.110 0.890 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.005 4.005 24 C -0.084 4.084 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.952 22.697 0.371 30.222 hybrid contribution -1.317 -0.571 -0.269 1.460 sum -21.268 22.126 0.102 30.691 Atomic orbital electron populations 1.22078 0.94205 1.02638 1.02905 1.20911 0.93817 0.93080 0.88959 1.22181 1.02345 0.95723 1.01931 1.46139 1.18198 1.57516 1.16833 1.20614 0.80949 0.78580 0.89880 1.90699 1.55407 1.58283 1.34601 1.21955 0.91685 0.99590 0.96317 1.61639 1.17725 1.35780 1.09383 1.22691 0.98085 0.92016 0.96333 1.21693 0.90701 1.01092 0.87021 1.48435 1.54041 1.19727 1.14727 1.21425 0.76199 0.80165 0.90588 1.90564 1.43509 1.74750 1.32017 1.19683 0.99178 0.95139 0.92692 1.21019 1.31353 0.99411 1.03170 0.89011 1.24978 0.94976 0.95162 0.98181 1.69895 1.40271 1.07981 1.35519 0.86901 0.80325 0.77642 0.85105 1.20029 1.21125 1.19124 1.21480 0.94525 0.92976 0.91559 1.22543 0.96095 0.98881 0.90923 0.92110 0.90929 0.91970 0.89416 0.92595 0.91892 0.91726 0.76830 0.87848 0.91955 0.94716 0.88171 0.90913 0.88966 0.93800 0.94038 0.92628 0.91506 0.88777 0.89856 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 9.38 37.15 0.35 -0.32 16 2 C 0.14 0.90 3.19 -67.93 -0.22 0.69 16 3 C -0.16 -1.07 9.49 37.16 0.35 -0.72 16 4 N -0.73 -4.86 5.08 -53.81 -0.27 -5.13 16 5 C 0.51 5.08 7.46 -10.98 -0.08 5.00 16 6 O -0.52 -7.22 13.99 5.56 0.08 -7.14 16 7 C 0.04 0.31 5.45 -4.98 -0.03 0.28 16 8 N -0.52 -6.28 4.37 -235.76 -1.03 -7.31 16 9 C 0.04 0.50 5.26 -3.70 -0.02 0.48 16 10 C 0.12 1.85 6.50 -3.60 -0.02 1.83 16 11 N -0.63 -11.51 3.01 -172.46 -0.52 -12.03 16 12 C 0.53 12.20 7.70 -10.99 -0.08 12.11 16 13 O -0.53 -14.31 14.92 5.55 0.08 -14.22 16 14 C -0.03 -0.67 2.89 -29.04 -0.08 -0.76 16 15 C -0.51 -15.36 9.48 -34.44 -0.33 -15.69 16 16 H 0.09 3.12 7.00 -52.49 -0.37 2.75 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 19 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 23 C 0.12 1.79 6.59 -3.60 -0.02 1.76 16 24 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 25 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.77 7.57 -51.93 -0.39 0.37 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.40 1.50 8.60 -40.82 -0.35 1.15 16 33 H 0.10 0.66 7.97 -51.93 -0.41 0.24 16 34 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 1.38 5.76 -51.93 -0.30 1.08 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.47 6.02 -51.93 -0.31 1.15 16 39 H 0.04 1.03 6.72 -51.93 -0.35 0.68 16 40 H 0.04 0.97 7.43 -51.93 -0.39 0.58 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.54 7.07 -51.93 -0.37 1.17 16 44 H 0.08 0.76 7.99 -51.93 -0.41 0.35 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -36.95 358.00 -7.94 -44.89 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.47 Total: -0.65 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.30 Total: 7.11 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -1.05 Total: -52.05 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.16 Total: -21.36 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.95 -7.94 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.068 kcal (2) G-P(sol) polarization free energy of solvation -36.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds