Wall clock time and date at job start Tue Mar 31 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47602 * 2 1 4 4 N 1.46506 * 109.47100 * 119.99752 * 2 1 3 5 5 C 1.34773 * 119.99969 * 154.71955 * 4 2 1 6 6 O 1.21281 * 120.00220 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.46889 * 109.47109 * 180.02562 * 7 5 4 9 9 C 1.46905 * 110.99928 * 294.29930 * 8 7 5 10 10 C 1.53241 * 109.33809 * 172.74808 * 9 8 7 11 11 N 1.47086 * 108.51937 * 53.83507 * 10 9 8 12 12 C 1.34772 * 120.87967 * 128.79449 * 11 10 9 13 13 O 1.21284 * 119.99986 * 180.02562 * 12 11 10 14 14 C 1.50698 * 120.00373 * 0.02562 * 12 11 10 15 15 C 1.50697 * 109.47179 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00135 * 0.02562 * 15 14 12 17 17 C 1.37880 * 120.00022 * 179.97438 * 15 14 12 18 18 N 1.31517 * 120.00202 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99802 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46960 * 90.00468 * 19 17 15 21 21 H 1.48505 * 109.46855 * 210.00383 * 19 17 15 22 22 H 1.48498 * 109.47198 * 330.00088 * 19 17 15 23 23 C 1.47079 * 118.23440 * 308.80912 * 11 10 9 24 24 C 1.46904 * 110.99974 * 170.00183 * 8 7 5 25 25 H 1.09001 * 109.47077 * 300.00924 * 1 2 3 26 26 H 1.09002 * 109.47012 * 60.00129 * 1 2 3 27 27 H 1.08996 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47163 * 239.99851 * 2 1 3 29 29 H 1.09001 * 109.47659 * 59.99432 * 3 2 1 30 30 H 1.08995 * 109.47574 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46832 * 299.99981 * 3 2 1 32 32 H 0.97005 * 119.99811 * 335.00008 * 4 2 1 33 33 H 1.09004 * 109.46762 * 300.00389 * 7 5 4 34 34 H 1.08998 * 109.46924 * 59.99727 * 7 5 4 35 35 H 1.08997 * 109.49012 * 292.70693 * 9 8 7 36 36 H 1.08996 * 109.49247 * 52.79249 * 9 8 7 37 37 H 1.08997 * 109.63227 * 294.11912 * 10 9 8 38 38 H 1.09003 * 109.62558 * 173.53938 * 10 9 8 39 39 H 1.08998 * 109.46774 * 299.99825 * 14 12 11 40 40 H 1.08994 * 109.47302 * 60.00005 * 14 12 11 41 41 H 0.96994 * 120.00307 * 179.97438 * 18 17 15 42 42 H 1.09006 * 109.63047 * 291.47633 * 23 11 10 43 43 H 1.09005 * 109.78552 * 170.99455 * 23 11 10 44 44 H 1.09001 * 109.48876 * 307.21059 * 24 8 7 45 45 H 1.09003 * 109.49296 * 67.28810 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2379 -1.2640 1.1926 6 8 3.9314 -1.2080 0.1992 7 6 3.7401 -1.9749 2.4229 8 7 5.0842 -2.5086 2.1658 9 6 5.0464 -3.5577 1.1382 10 6 6.4786 -3.9591 0.7697 11 7 7.1940 -4.3217 2.0027 12 6 7.8616 -5.4886 2.0973 13 8 8.4457 -5.7718 3.1218 14 6 7.8824 -6.4417 0.9302 15 6 8.6902 -7.6614 1.2919 16 1 9.1429 -7.7388 2.2694 17 6 8.8505 -8.6789 0.3753 18 7 9.5550 -9.7435 0.6912 19 14 8.0657 -8.5458 -1.3146 20 1 9.0137 -7.8891 -2.2502 21 1 7.7366 -9.9044 -1.8158 22 1 6.8230 -7.7382 -1.2211 23 6 7.1611 -3.3772 3.1296 24 6 5.7021 -2.9987 3.4052 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.4621 -0.7386 1.9896 33 1 3.7812 -1.2736 3.2564 34 1 3.0647 -2.7939 2.6703 35 1 4.5132 -4.4263 1.5247 36 1 4.5350 -3.1810 0.2524 37 1 6.9814 -3.1207 0.2877 38 1 6.4569 -4.8142 0.0941 39 1 6.8628 -6.7406 0.6871 40 1 8.3324 -5.9502 0.0677 41 1 9.6675 -10.4595 0.0465 42 1 7.7296 -2.4827 2.8745 43 1 7.5918 -3.8444 4.0153 44 1 5.6661 -2.2165 4.1634 45 1 5.1597 -3.8751 3.7601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:44 Heat of formation + Delta-G solvation = -89.456082 kcal Electronic energy + Delta-G solvation = -24513.198783 eV Core-core repulsion = 20950.688937 eV Total energy + Delta-G solvation = -3562.509846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33472 -40.63941 -38.77038 -36.87060 -35.46484 -35.07020 -32.74379 -32.54135 -31.37986 -29.69899 -28.06851 -26.57403 -25.28821 -24.42427 -22.48486 -21.91821 -21.38283 -19.83713 -19.16635 -18.09022 -17.75842 -17.09198 -17.04872 -16.61742 -16.38448 -16.04207 -15.78886 -15.64213 -15.51779 -15.04957 -14.87892 -14.46453 -14.31151 -14.06928 -13.87297 -13.37099 -13.30809 -13.09847 -13.04538 -12.91657 -12.75438 -12.43182 -12.37264 -12.32777 -12.24872 -12.10008 -11.87316 -11.84795 -11.48081 -10.80762 -10.75656 -10.56230 -10.05347 -9.73198 -9.27572 -8.28264 -6.36786 1.37456 1.41135 1.51436 1.71492 1.78526 2.02121 2.17621 2.36258 2.94720 3.04573 3.73828 3.80620 3.96108 4.00378 4.06303 4.17194 4.22723 4.26757 4.33473 4.36166 4.45911 4.49131 4.60761 4.65091 4.75927 4.76766 4.79404 4.83898 4.85907 4.95766 4.98967 5.05746 5.07098 5.28946 5.35411 5.42387 5.61343 5.63589 5.87945 5.94969 6.22272 6.48367 6.66974 6.79564 7.22983 7.37752 7.39969 8.89301 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003180 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.079327 B = 8802.757126 C = 9740.422415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.717 5.717 5 C 0.511 3.489 6 O -0.564 6.564 7 C 0.037 3.963 8 N -0.532 5.532 9 C 0.047 3.953 10 C 0.112 3.888 11 N -0.621 5.621 12 C 0.521 3.479 13 O -0.585 6.585 14 C -0.022 4.022 15 C -0.534 4.534 16 H 0.029 0.971 17 C 0.004 3.996 18 N -0.952 5.952 19 Si 0.957 3.043 20 H -0.261 1.261 21 H -0.282 1.282 22 H -0.232 1.232 23 C 0.111 3.889 24 C 0.056 3.944 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.415 0.585 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.269 0.731 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.119 0.881 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.605 25.061 -0.298 35.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.029 3.971 3 C -0.217 4.217 4 N -0.371 5.371 5 C 0.298 3.702 6 O -0.442 6.442 7 C -0.093 4.093 8 N -0.257 5.257 9 C -0.081 4.081 10 C -0.010 4.010 11 N -0.355 5.355 12 C 0.311 3.689 13 O -0.464 6.464 14 C -0.062 4.062 15 C -0.572 4.572 16 H 0.048 0.952 17 C -0.193 4.193 18 N -0.592 5.592 19 Si 0.778 3.222 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.155 1.155 23 C -0.012 4.012 24 C -0.072 4.072 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.252 0.748 33 H 0.152 0.848 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.137 0.863 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -23.463 25.183 -0.698 34.426 hybrid contribution -0.241 -1.246 0.158 1.278 sum -23.703 23.937 -0.540 33.692 Atomic orbital electron populations 1.22020 0.91899 1.03020 1.04068 1.20948 0.95503 0.92663 0.87961 1.22133 1.00437 0.95969 1.03154 1.46031 1.17374 1.56197 1.17525 1.20887 0.81347 0.78398 0.89606 1.90684 1.56913 1.60308 1.36286 1.22069 0.90057 1.00573 0.96592 1.61566 1.20180 1.35003 1.09001 1.22514 0.96095 0.92451 0.97066 1.21913 0.91989 1.01298 0.85818 1.48371 1.52289 1.18359 1.16509 1.21209 0.76564 0.81557 0.89527 1.90545 1.46085 1.76271 1.33546 1.19559 0.99183 0.93542 0.93909 1.21162 1.32501 1.02428 1.01126 0.95224 1.26113 0.95296 0.94078 1.03806 1.70084 1.42070 1.09241 1.37774 0.85587 0.80543 0.78422 0.77632 1.18610 1.20726 1.15496 1.21718 0.97502 0.92200 0.89760 1.22452 0.93221 0.99936 0.91641 0.90501 0.90239 0.91964 0.91998 0.91172 0.94703 0.90757 0.74837 0.84798 0.89998 0.94884 0.88117 0.90233 0.89060 0.91734 0.92003 0.92222 0.90390 0.90575 0.86276 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.38 71.98 0.68 -0.15 16 2 C 0.13 1.51 3.19 44.99 0.14 1.66 16 3 C -0.16 -1.80 9.49 71.98 0.68 -1.12 16 4 N -0.72 -7.56 5.08 -442.54 -2.25 -9.80 16 5 C 0.51 8.86 7.46 87.66 0.65 9.51 16 6 O -0.56 -15.10 13.99 -3.03 -0.04 -15.14 16 7 C 0.04 0.51 5.45 85.56 0.47 0.98 16 8 N -0.53 -11.31 4.37 -899.82 -3.93 -15.24 16 9 C 0.05 1.17 5.26 86.38 0.45 1.63 16 10 C 0.11 3.31 6.50 86.35 0.56 3.87 16 11 N -0.62 -22.17 3.01 -817.92 -2.46 -24.63 16 12 C 0.52 24.63 7.70 87.66 0.68 25.31 16 13 O -0.58 -33.03 14.92 -3.04 -0.05 -33.07 16 14 C -0.02 -1.09 2.89 29.10 0.08 -1.01 16 15 C -0.53 -33.34 9.48 25.60 0.24 -33.10 16 16 H 0.03 2.16 7.00 -2.91 -0.02 2.14 16 17 C 0.00 0.22 5.47 84.66 0.46 0.68 16 18 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 19 Si 0.96 43.46 27.47 68.60 1.88 45.34 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.23 -9.20 6.54 99.48 0.65 -8.55 16 23 C 0.11 3.24 6.59 86.35 0.57 3.81 16 24 C 0.06 1.16 5.62 86.38 0.49 1.65 16 25 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 1.05 7.57 -2.39 -0.02 1.03 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.41 1.58 8.60 -92.70 -0.80 0.79 16 33 H 0.13 1.03 7.97 -2.39 -0.02 1.01 16 34 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 2.58 5.76 -2.39 -0.01 2.57 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.09 2.69 6.02 -2.39 -0.01 2.67 16 39 H 0.06 2.89 6.72 -2.39 -0.02 2.88 16 40 H 0.06 2.78 7.43 -2.39 -0.02 2.76 16 41 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 42 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.08 2.53 7.07 -2.38 -0.02 2.51 16 44 H 0.12 1.69 7.99 -2.39 -0.02 1.67 16 45 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -86.63 358.00 -0.26 -86.89 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.13 Total: 13.85 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.16 Total: 13.72 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -8.34 Total: -111.59 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.09 Total: -48.21 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Total: -86.63 -0.26 -86.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.563 kcal (2) G-P(sol) polarization free energy of solvation -86.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds