Wall clock time and date at job start Tue Mar 31 2020 03:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50700 * 113.53579 * 270.81164 * 4 3 2 6 6 O 1.21281 * 120.00003 * 97.49556 * 5 4 3 7 7 N 1.34772 * 119.99908 * 277.48956 * 5 4 3 8 8 C 1.46497 * 119.99808 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47262 * 180.02562 * 8 7 5 10 10 C 1.52990 * 109.47412 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47248 * 180.02562 * 10 9 8 12 12 C 1.46900 * 110.99876 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46733 * 179.97438 * 12 11 10 14 14 O 1.21289 * 120.00311 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00323 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99305 * 359.97438 * 16 15 13 18 18 C 1.38948 * 120.00159 * 179.97438 * 16 15 13 19 19 N 1.31407 * 120.00352 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99858 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46768 * 89.99951 * 20 18 16 22 22 H 1.48495 * 109.46872 * 209.99970 * 20 18 16 23 23 H 1.48496 * 109.46960 * 329.99837 * 20 18 16 24 24 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 25 25 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 26 26 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 27 27 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 28 28 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 29 29 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 30 30 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 31 31 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 32 32 H 0.96996 * 120.00038 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47285 * 300.00005 * 8 7 5 34 34 H 1.09000 * 109.47627 * 60.00567 * 8 7 5 35 35 H 1.09001 * 109.46940 * 300.00174 * 9 8 7 36 36 H 1.09006 * 109.46776 * 59.99693 * 9 8 7 37 37 H 1.09001 * 109.47383 * 300.00114 * 10 9 8 38 38 H 1.09006 * 109.47229 * 60.00181 * 10 9 8 39 39 H 1.00895 * 111.00266 * 56.04322 * 11 10 9 40 40 H 1.09000 * 109.47147 * 299.99742 * 12 11 10 41 41 H 1.08999 * 109.47480 * 60.00339 * 12 11 10 42 42 H 0.97003 * 119.99605 * 359.97438 * 15 13 12 43 43 H 0.97001 * 120.00621 * 179.97438 * 19 18 16 44 44 H 1.09006 * 113.61506 * 254.52982 * 24 2 1 45 45 H 1.08996 * 113.61642 * 25.43366 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 4.4073 0.2776 -0.3176 6 8 4.4864 -0.9204 -0.1465 7 7 5.4059 1.0844 0.0927 8 6 6.5871 0.5140 0.7450 9 6 7.5608 1.6368 1.1090 10 6 8.7941 1.0413 1.7908 11 7 9.7286 2.1194 2.1408 12 6 10.9279 1.5835 2.7985 13 6 11.8612 2.7161 3.1412 14 8 11.5570 3.8573 2.8652 15 7 13.0335 2.4610 3.7553 16 6 13.8823 3.4913 4.0676 17 1 13.6117 4.5074 3.8211 18 6 15.0906 3.2283 4.7012 19 7 15.9045 4.2158 5.0000 20 14 15.5583 1.4708 5.1281 21 1 16.3057 0.8684 3.9952 22 1 16.4126 1.4672 6.3427 23 1 14.3281 0.6800 5.3859 24 6 2.1460 -0.1865 -1.3966 25 1 -0.3633 -0.9603 -0.3660 26 1 -0.3633 0.7971 -0.6487 27 1 -0.3634 0.1632 1.0147 28 1 1.9533 -0.6616 0.7559 29 1 1.4945 2.1704 -0.4289 30 1 2.5650 1.7024 0.9626 31 1 3.4444 1.5619 -1.7878 32 1 5.3425 2.0426 -0.0439 33 1 6.2840 -0.0113 1.6507 34 1 7.0755 -0.1848 0.0659 35 1 7.8640 2.1625 0.2036 36 1 7.0722 2.3354 1.7883 37 1 8.4906 0.5159 2.6963 38 1 9.2828 0.3425 1.1118 39 1 9.2793 2.8143 2.7180 40 1 10.6395 1.0613 3.7107 41 1 11.4316 0.8891 2.1260 42 1 13.2763 1.5484 3.9770 43 1 16.7478 4.0323 5.4427 44 1 2.5651 -1.1795 -1.5599 45 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156424027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:24 Heat of formation + Delta-G solvation = -63.750074 kcal Electronic energy + Delta-G solvation = -22689.100076 eV Core-core repulsion = 19127.704926 eV Total energy + Delta-G solvation = -3561.395150 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.85417 -38.55498 -38.15725 -36.54042 -34.92854 -33.90926 -31.80086 -31.54567 -30.33524 -27.45062 -26.09466 -25.35453 -23.99890 -22.86207 -21.79416 -21.23122 -19.53620 -19.30320 -18.32300 -17.14878 -16.57243 -16.30428 -15.88528 -15.63354 -15.42088 -15.10326 -14.81085 -14.27696 -14.16342 -13.95223 -13.84539 -13.49583 -13.19425 -12.99663 -12.78905 -12.41479 -12.36415 -12.15928 -11.94572 -11.80910 -11.66328 -11.55343 -11.38199 -11.19944 -11.03147 -10.64012 -10.61725 -10.60217 -10.06834 -9.98373 -9.58336 -9.37946 -8.61691 -8.21438 -8.16598 -6.32021 -3.83583 2.30070 2.80561 3.02005 3.06629 3.14677 3.72776 4.04456 4.05904 4.10031 4.15274 4.25356 4.32992 4.65583 4.73094 4.80034 4.97567 4.98712 5.03904 5.17593 5.21152 5.24329 5.26665 5.31834 5.34305 5.43120 5.43521 5.54108 5.61259 5.62528 5.70915 5.79124 5.85404 5.88807 5.92602 5.98254 6.05066 6.13623 7.04898 7.17736 7.53381 7.57390 7.91979 8.13425 8.58749 8.93892 9.41433 9.81517 10.81051 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.048021 B = 0.001761 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.938464 B =15897.917142 C =16161.573361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.143 4.143 5 C 0.530 3.470 6 O -0.538 6.538 7 N -0.727 5.727 8 C 0.120 3.880 9 C -0.129 4.129 10 C 0.063 3.937 11 N -0.670 5.670 12 C 0.048 3.952 13 C 0.449 3.551 14 O -0.565 6.565 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.117 4.117 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.402 0.598 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.351 0.649 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.371 0.629 43 H 0.273 0.727 44 H 0.081 0.919 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.453 -9.896 -10.116 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.158 4.158 4 C -0.164 4.164 5 C 0.316 3.684 6 O -0.415 6.415 7 N -0.379 5.379 8 C -0.004 4.004 9 C -0.167 4.167 10 C -0.068 4.068 11 N -0.302 5.302 12 C -0.085 4.085 13 C 0.235 3.765 14 O -0.447 6.447 15 N -0.230 5.230 16 C -0.435 4.435 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.155 4.155 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.170 0.830 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.076 -9.894 -10.691 30.746 hybrid contribution 0.355 -1.062 1.256 1.683 sum -26.721 -10.957 -9.435 30.382 Atomic orbital electron populations 1.21724 0.94666 1.01800 1.01726 1.22546 0.95695 0.96972 0.98224 1.22998 0.96614 0.97389 0.98828 1.22433 0.93201 1.00673 1.00106 1.20107 0.83468 0.86707 0.78114 1.90699 1.79876 1.15112 1.55817 1.45983 1.19622 1.10945 1.61338 1.21329 0.85146 0.96273 0.97633 1.21742 0.95038 0.97679 1.02289 1.21830 0.92231 0.93879 0.98812 1.60031 1.06808 1.13473 1.49900 1.21706 0.92317 0.96760 0.97702 1.19708 0.83311 0.89945 0.83519 1.90560 1.75315 1.22360 1.56495 1.42208 1.17818 1.08780 1.54165 1.19436 0.97643 0.90405 1.35993 0.86281 1.25037 0.95906 0.97846 0.97329 1.69618 1.10682 1.30975 1.40825 0.86666 0.79081 0.84385 0.79218 1.19576 1.20174 1.19531 1.22858 0.95978 0.99494 0.97125 0.92436 0.92595 0.92642 0.88931 0.88933 0.91098 0.88070 0.76326 0.91514 0.91230 0.90037 0.91198 0.95220 0.90738 0.83005 0.93696 0.89403 0.79665 0.91599 0.90034 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.70 37.16 0.36 -0.40 16 2 C -0.12 -0.79 4.00 -89.81 -0.36 -1.15 16 3 C -0.12 -0.68 7.22 -25.83 -0.19 -0.87 16 4 C -0.14 -0.95 4.35 -90.86 -0.40 -1.34 16 5 C 0.53 5.09 7.08 -10.99 -0.08 5.01 16 6 O -0.54 -7.28 15.75 5.56 0.09 -7.19 16 7 N -0.73 -5.74 5.56 -60.29 -0.33 -6.07 16 8 C 0.12 1.05 5.67 -4.04 -0.02 1.03 16 9 C -0.13 -1.14 5.59 -26.73 -0.15 -1.29 16 10 C 0.06 0.68 5.68 -3.83 -0.02 0.66 16 11 N -0.67 -10.01 6.12 -115.06 -0.70 -10.71 16 12 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 13 C 0.45 10.18 7.82 -10.98 -0.09 10.10 16 14 O -0.57 -15.15 15.78 5.55 0.09 -15.06 16 15 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 16 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16 17 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 20 Si 0.88 19.35 27.74 -169.99 -4.71 14.63 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 24 C -0.12 -0.80 7.02 -25.92 -0.18 -0.98 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.25 7.98 -51.93 -0.41 -0.16 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.09 0.38 7.99 -51.93 -0.41 -0.03 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 2.22 8.47 -40.82 -0.35 1.87 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.35 5.38 8.43 -39.29 -0.33 5.04 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.08 0.72 7.43 -51.93 -0.39 0.33 16 45 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -34.48 372.28 -8.24 -42.72 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.59 Total: 11.40 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.40 Total: 3.75 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.32 Total: -55.85 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: 0.18 Total: -22.25 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.48 -8.24 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156424027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.032 kcal (2) G-P(sol) polarization free energy of solvation -34.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds