Wall clock time and date at job start Tue Mar 31 2020 03:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50700 * 113.53579 * 270.81164 * 4 3 2 6 6 O 1.21281 * 120.00003 * 97.49556 * 5 4 3 7 7 N 1.34772 * 119.99908 * 277.48956 * 5 4 3 8 8 C 1.46497 * 119.99808 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47262 * 180.02562 * 8 7 5 10 10 C 1.52990 * 109.47412 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47248 * 180.02562 * 10 9 8 12 12 C 1.46900 * 110.99876 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46733 * 179.97438 * 12 11 10 14 14 O 1.21289 * 120.00311 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00045 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00323 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99305 * 359.97438 * 16 15 13 18 18 C 1.38948 * 120.00159 * 179.97438 * 16 15 13 19 19 N 1.31407 * 120.00352 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99858 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46768 * 89.99951 * 20 18 16 22 22 H 1.48495 * 109.46872 * 209.99970 * 20 18 16 23 23 H 1.48496 * 109.46960 * 329.99837 * 20 18 16 24 24 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 25 25 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 26 26 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 27 27 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 28 28 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 29 29 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 30 30 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 31 31 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 32 32 H 0.96996 * 120.00038 * 0.02562 * 7 5 4 33 33 H 1.09001 * 109.47285 * 300.00005 * 8 7 5 34 34 H 1.09000 * 109.47627 * 60.00567 * 8 7 5 35 35 H 1.09001 * 109.46940 * 300.00174 * 9 8 7 36 36 H 1.09006 * 109.46776 * 59.99693 * 9 8 7 37 37 H 1.09001 * 109.47383 * 300.00114 * 10 9 8 38 38 H 1.09006 * 109.47229 * 60.00181 * 10 9 8 39 39 H 1.00895 * 111.00266 * 56.04322 * 11 10 9 40 40 H 1.09000 * 109.47147 * 299.99742 * 12 11 10 41 41 H 1.08999 * 109.47480 * 60.00339 * 12 11 10 42 42 H 0.97003 * 119.99605 * 359.97438 * 15 13 12 43 43 H 0.97001 * 120.00621 * 179.97438 * 19 18 16 44 44 H 1.09006 * 113.61506 * 254.52982 * 24 2 1 45 45 H 1.08996 * 113.61642 * 25.43366 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 4.4073 0.2776 -0.3176 6 8 4.4864 -0.9204 -0.1465 7 7 5.4059 1.0844 0.0927 8 6 6.5871 0.5140 0.7450 9 6 7.5608 1.6368 1.1090 10 6 8.7941 1.0413 1.7908 11 7 9.7286 2.1194 2.1408 12 6 10.9279 1.5835 2.7985 13 6 11.8612 2.7161 3.1412 14 8 11.5570 3.8573 2.8652 15 7 13.0335 2.4610 3.7553 16 6 13.8823 3.4913 4.0676 17 1 13.6117 4.5074 3.8211 18 6 15.0906 3.2283 4.7012 19 7 15.9045 4.2158 5.0000 20 14 15.5583 1.4708 5.1281 21 1 16.3057 0.8684 3.9952 22 1 16.4126 1.4672 6.3427 23 1 14.3281 0.6800 5.3859 24 6 2.1460 -0.1865 -1.3966 25 1 -0.3633 -0.9603 -0.3660 26 1 -0.3633 0.7971 -0.6487 27 1 -0.3634 0.1632 1.0147 28 1 1.9533 -0.6616 0.7559 29 1 1.4945 2.1704 -0.4289 30 1 2.5650 1.7024 0.9626 31 1 3.4444 1.5619 -1.7878 32 1 5.3425 2.0426 -0.0439 33 1 6.2840 -0.0113 1.6507 34 1 7.0755 -0.1848 0.0659 35 1 7.8640 2.1625 0.2036 36 1 7.0722 2.3354 1.7883 37 1 8.4906 0.5159 2.6963 38 1 9.2828 0.3425 1.1118 39 1 9.2793 2.8143 2.7180 40 1 10.6395 1.0613 3.7107 41 1 11.4316 0.8891 2.1260 42 1 13.2763 1.5484 3.9770 43 1 16.7478 4.0323 5.4427 44 1 2.5651 -1.1795 -1.5599 45 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156424027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:22 Heat of formation + Delta-G solvation = -91.197588 kcal Electronic energy + Delta-G solvation = -22690.290289 eV Core-core repulsion = 19127.704926 eV Total energy + Delta-G solvation = -3562.585364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.50473 -40.31267 -38.82952 -37.55435 -36.13218 -35.65772 -33.76152 -32.56284 -30.88578 -28.76418 -26.71376 -26.50328 -25.19581 -23.81663 -22.58750 -21.87298 -21.28704 -20.32951 -19.98261 -17.89825 -17.73084 -17.30841 -17.00726 -16.79998 -16.51436 -16.08946 -15.80894 -15.70354 -15.11274 -15.02489 -14.81178 -14.46391 -14.38750 -14.27048 -14.13229 -13.48680 -13.28086 -13.21575 -12.89669 -12.84845 -12.70537 -12.44073 -12.40903 -12.23402 -11.98020 -11.92659 -11.84822 -11.51866 -11.14288 -11.10522 -10.81919 -10.44980 -10.25383 -10.11752 -9.34447 -8.41768 -6.02870 1.30343 1.35766 1.44538 1.57929 1.94782 2.13389 2.22787 2.74931 3.14536 3.40774 3.54563 3.64524 3.71941 3.83200 3.98808 4.10038 4.13751 4.17873 4.28476 4.43273 4.52704 4.55386 4.56544 4.69596 4.71853 4.77085 4.79883 4.85265 4.89159 4.95607 5.15031 5.17334 5.20067 5.22814 5.39119 5.44380 5.52113 5.55961 5.89663 6.03425 6.38368 6.54440 6.59185 6.87328 7.23649 7.39093 7.95416 8.75786 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.048021 B = 0.001761 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.938464 B =15897.917142 C =16161.573361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.141 4.141 5 C 0.524 3.476 6 O -0.585 6.585 7 N -0.718 5.718 8 C 0.126 3.874 9 C -0.116 4.116 10 C 0.064 3.936 11 N -0.688 5.688 12 C 0.061 3.939 13 C 0.447 3.553 14 O -0.614 6.614 15 N -0.591 5.591 16 C -0.331 4.331 17 H 0.055 0.945 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.231 1.231 24 C -0.117 4.117 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.416 0.584 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.081 0.919 39 H 0.346 0.654 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.055 0.945 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.832 -11.961 -10.473 32.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C -0.146 4.146 4 C -0.162 4.162 5 C 0.312 3.688 6 O -0.465 6.465 7 N -0.369 5.369 8 C 0.002 3.998 9 C -0.154 4.154 10 C -0.066 4.066 11 N -0.320 5.320 12 C -0.071 4.071 13 C 0.235 3.765 14 O -0.499 6.499 15 N -0.232 5.232 16 C -0.460 4.460 17 H 0.074 0.926 18 C -0.213 4.213 19 N -0.574 5.574 20 Si 0.785 3.215 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.155 1.155 24 C -0.155 4.155 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.145 0.855 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.164 0.836 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.073 0.927 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -28.480 -11.948 -11.062 32.806 hybrid contribution 0.731 -0.308 1.322 1.541 sum -27.750 -12.257 -9.740 31.861 Atomic orbital electron populations 1.21701 0.93435 1.02276 1.02136 1.22519 0.96720 0.97480 0.97462 1.23008 0.96120 0.97002 0.98508 1.22454 0.92012 1.00917 1.00826 1.20689 0.84325 0.86227 0.77607 1.90678 1.80884 1.17166 1.57771 1.45923 1.18957 1.11608 1.60459 1.21189 0.85342 0.96074 0.97214 1.21593 0.94257 0.97480 1.02097 1.21904 0.92071 0.92938 0.99644 1.60035 1.07341 1.14888 1.49762 1.21635 0.91536 0.94054 0.99889 1.21005 0.83230 0.91075 0.81146 1.90538 1.76314 1.25248 1.57795 1.42038 1.17813 1.08557 1.54836 1.19023 0.99651 0.89340 1.37998 0.92637 1.26111 0.94887 1.04103 0.96169 1.69799 1.11443 1.34494 1.41685 0.85363 0.80126 0.76982 0.79036 1.18195 1.20010 1.15453 1.22903 0.96408 0.98353 0.97852 0.92705 0.91037 0.92611 0.91772 0.86477 0.91455 0.85540 0.74740 0.92162 0.92048 0.90317 0.90512 0.93848 0.90062 0.83575 0.90525 0.86819 0.77449 0.91124 0.92663 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.70 71.98 0.70 -0.59 16 2 C -0.12 -1.59 4.00 -10.27 -0.04 -1.63 16 3 C -0.11 -0.99 7.22 31.18 0.23 -0.77 16 4 C -0.14 -1.63 4.35 -10.95 -0.05 -1.68 16 5 C 0.52 9.71 7.08 87.66 0.62 10.33 16 6 O -0.58 -16.14 15.75 -3.03 -0.05 -16.19 16 7 N -0.72 -10.33 5.56 -463.06 -2.57 -12.90 16 8 C 0.13 2.04 5.67 86.38 0.49 2.53 16 9 C -0.12 -1.81 5.59 30.59 0.17 -1.64 16 10 C 0.06 1.21 5.68 86.30 0.49 1.70 16 11 N -0.69 -19.13 6.12 -517.93 -3.17 -22.30 16 12 C 0.06 1.82 6.17 85.56 0.53 2.35 16 13 C 0.45 20.05 7.82 87.66 0.69 20.74 16 14 O -0.61 -33.88 15.78 -3.06 -0.05 -33.92 16 15 N -0.59 -27.77 5.09 -306.99 -1.56 -29.33 16 16 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 17 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 18 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 19 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 20 Si 0.97 38.65 27.74 68.60 1.90 40.55 16 21 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 24 C -0.12 -1.50 7.02 31.12 0.22 -1.28 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.45 7.98 -2.39 -0.02 0.43 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.06 1.18 8.07 -2.38 -0.02 1.16 16 29 H 0.12 0.54 7.99 -2.39 -0.02 0.52 16 30 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 31 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.42 3.72 8.47 -92.71 -0.79 2.93 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.35 10.16 8.43 -89.70 -0.76 9.40 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.39 15.11 5.76 -92.71 -0.53 14.57 16 43 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.05 1.01 7.43 -2.38 -0.02 0.99 16 45 H 0.11 0.88 8.10 -2.39 -0.02 0.86 16 Total: -1.00 -81.13 372.28 -0.97 -82.10 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.13 Total: 36.72 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.36 Total: 11.22 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -7.01 Total: -120.47 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -0.10 Total: -50.12 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.55 kcal Total: -81.13 -0.97 -82.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156424027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.096 kcal (2) G-P(sol) polarization free energy of solvation -81.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds