Wall clock time and date at job start Tue Mar 31 2020 03:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 115.54956 * 2 1 4 4 C 1.52994 * 117.49943 * 214.29496 * 2 1 3 5 5 C 1.52994 * 117.49737 * 145.66975 * 2 1 3 6 6 H 1.08995 * 117.49972 * 215.00386 * 5 2 1 7 7 C 1.50703 * 117.49989 * 0.02562 * 5 2 1 8 8 O 1.21273 * 119.99963 * 359.97438 * 7 5 2 9 9 N 1.34779 * 119.99944 * 179.97438 * 7 5 2 10 10 C 1.46499 * 119.99872 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46900 * 111.00559 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47550 * 180.02562 * 14 13 12 16 16 O 1.21297 * 119.99908 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99950 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99788 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99731 * 0.02562 * 18 17 15 20 20 C 1.38943 * 119.99929 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00181 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00062 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47328 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47708 * 119.99950 * 22 20 18 25 25 H 1.48501 * 109.47148 * 239.99901 * 22 20 18 26 26 H 1.09000 * 109.47277 * 274.33157 * 1 2 3 27 27 H 1.09009 * 109.47415 * 34.33028 * 1 2 3 28 28 H 1.09007 * 109.47316 * 154.32709 * 1 2 3 29 29 H 1.08992 * 109.47169 * 205.66674 * 3 2 1 30 30 H 1.09000 * 109.46988 * 325.67555 * 3 2 1 31 31 H 1.08997 * 109.46716 * 85.66733 * 3 2 1 32 32 H 1.08999 * 117.49881 * 145.02040 * 4 2 1 33 33 H 1.09009 * 117.49736 * 359.97438 * 4 2 1 34 34 H 0.97005 * 119.99680 * 359.97438 * 9 7 5 35 35 H 1.09001 * 109.46813 * 60.00258 * 10 9 7 36 36 H 1.08992 * 109.47397 * 300.00319 * 10 9 7 37 37 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 38 38 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 39 39 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 40 40 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 41 41 H 1.00899 * 111.00176 * 303.95826 * 13 12 11 42 42 H 1.09003 * 109.46962 * 299.99965 * 14 13 12 43 43 H 1.09005 * 109.46918 * 59.99862 * 14 13 12 44 44 H 0.96992 * 120.00015 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00021 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2364 -1.1207 0.7654 6 1 3.1712 -0.8746 1.2689 7 6 1.3719 -2.1404 1.4610 8 8 0.1638 -2.0531 1.4014 9 7 1.9415 -3.1495 2.1495 10 6 1.1011 -4.1405 2.8262 11 6 1.9902 -5.1695 3.5274 12 6 1.1126 -6.2048 4.2336 13 7 1.9662 -7.1924 4.9073 14 6 1.1560 -8.2051 5.5973 15 6 2.0640 -9.1982 6.2756 16 8 3.2678 -9.0744 6.1928 17 7 1.5386 -10.2234 6.9751 18 6 2.3648 -11.1267 7.5926 19 1 3.4366 -11.0164 7.5188 20 6 1.8231 -12.1839 8.3133 21 7 0.5189 -12.3178 8.4035 22 14 2.9487 -13.4142 9.1552 23 1 4.3643 -13.0428 8.9036 24 1 2.6865 -13.4055 10.6169 25 1 2.6901 -14.7727 8.6140 26 1 -0.3634 0.0776 1.0247 27 1 -0.3634 0.8487 -0.5796 28 1 -0.3634 -0.9263 -0.4452 29 1 3.1822 1.3088 -0.4451 30 1 1.5809 2.0742 -0.5795 31 1 2.2765 1.7416 1.0247 32 1 3.1715 -0.8755 -1.2680 33 1 1.6111 -1.8591 -1.2674 34 1 2.9079 -3.2195 2.1968 35 1 0.4716 -4.6444 2.0929 36 1 0.4722 -3.6411 3.5630 37 1 2.6190 -5.6689 2.7902 38 1 2.6201 -4.6658 4.2606 39 1 0.4836 -5.7057 4.9708 40 1 0.4830 -6.7084 3.5002 41 1 2.6045 -7.6233 4.2554 42 1 0.5267 -7.7201 6.3436 43 1 0.5273 -8.7228 4.8729 44 1 0.5760 -10.3222 7.0416 45 1 0.1408 -13.0556 8.9069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156677796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:28 Heat of formation + Delta-G solvation = -62.898630 kcal Electronic energy + Delta-G solvation = -22612.567947 eV Core-core repulsion = 19051.209718 eV Total energy + Delta-G solvation = -3561.358229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.52836 -38.35300 -37.80974 -36.39314 -34.84065 -33.84790 -31.61765 -31.15254 -29.76133 -27.77498 -27.26723 -25.30155 -24.03992 -22.81970 -21.72966 -20.66349 -19.46910 -19.16975 -17.88992 -17.36100 -16.46070 -16.14135 -15.77978 -15.45225 -15.06061 -14.59789 -14.52689 -14.27454 -14.19465 -13.93884 -13.60204 -13.48168 -13.30200 -12.90132 -12.86868 -12.34350 -12.18783 -12.05936 -11.85377 -11.79593 -11.58615 -11.46614 -11.42473 -11.10296 -10.95636 -10.60267 -10.34655 -10.26239 -10.22942 -9.74738 -9.52542 -9.31029 -8.47958 -8.08261 -7.96494 -6.42171 -3.83115 2.22946 2.82165 3.16122 3.26713 3.33978 3.37165 3.90244 4.07796 4.22696 4.26799 4.31322 4.38624 4.70624 4.72472 4.81376 4.96117 5.04678 5.15134 5.19142 5.25585 5.27391 5.29849 5.42341 5.49116 5.51886 5.56141 5.62730 5.65009 5.70973 5.78686 5.84520 5.96051 5.98215 6.02549 6.14693 6.25994 6.26561 7.18455 7.23457 7.55005 7.63482 7.98694 8.06104 8.60740 9.17441 9.53888 10.05177 10.75634 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.061060 B = 0.001676 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.456348 B =16700.562680 C =16997.072088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.147 4.147 5 C -0.191 4.191 6 H 0.122 0.878 7 C 0.541 3.459 8 O -0.535 6.535 9 N -0.727 5.727 10 C 0.121 3.879 11 C -0.129 4.129 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.349 0.651 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 22.864 -16.922 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.094 4.094 3 C -0.174 4.174 4 C -0.184 4.184 5 C -0.212 4.212 6 H 0.140 0.860 7 C 0.327 3.673 8 O -0.412 6.412 9 N -0.378 5.378 10 C -0.003 4.003 11 C -0.167 4.167 12 C -0.068 4.068 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.168 0.832 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.288 23.220 -16.334 28.391 hybrid contribution 0.106 -1.450 -0.062 1.456 sum 0.394 21.769 -16.396 27.256 Atomic orbital electron populations 1.21359 0.90586 1.01427 1.02647 1.21594 0.96051 0.90551 1.01247 1.21406 0.99970 0.93773 1.02276 1.23223 1.02893 1.01603 0.90718 1.22378 1.02033 1.00945 0.95839 0.85983 1.19680 0.88158 0.81146 0.78282 1.90709 1.14562 1.74755 1.61221 1.45996 1.10629 1.27787 1.53387 1.21321 0.93436 0.89259 0.96269 1.21741 0.98648 0.96428 0.99893 1.21826 0.94776 0.93531 0.96636 1.60057 1.18933 1.17186 1.34022 1.21675 0.95286 0.93048 0.98221 1.19812 0.89062 0.83922 0.84605 1.90519 1.15098 1.75965 1.65245 1.41872 1.09558 1.23341 1.45268 1.19764 0.92172 1.03767 1.27222 0.87848 1.25267 0.96266 0.98557 0.97877 1.69620 1.10206 1.32327 1.42131 0.85791 0.80138 0.79679 0.78677 1.19220 1.20732 1.20779 0.91383 0.93254 0.91711 0.92256 0.91574 0.91927 0.87812 0.88258 0.76416 0.91518 0.91243 0.91271 0.90127 0.90781 0.95256 0.83204 0.89537 0.93808 0.77439 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 8.09 37.16 0.30 -0.61 16 2 C -0.09 -0.68 2.70 -154.51 -0.42 -1.10 16 3 C -0.12 -0.63 9.85 37.16 0.37 -0.26 16 4 C -0.15 -0.95 9.52 -26.73 -0.25 -1.20 16 5 C -0.19 -1.40 5.91 -91.77 -0.54 -1.94 16 6 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 7 C 0.54 5.42 7.59 -10.98 -0.08 5.33 16 8 O -0.54 -7.13 13.10 5.56 0.07 -7.06 16 9 N -0.73 -6.10 5.56 -60.30 -0.33 -6.44 16 10 C 0.12 1.13 5.67 -4.04 -0.02 1.10 16 11 C -0.13 -1.22 5.59 -26.73 -0.15 -1.37 16 12 C 0.06 0.73 5.68 -3.83 -0.02 0.71 16 13 N -0.67 -10.64 6.13 -115.06 -0.70 -11.34 16 14 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 16 O -0.58 -15.92 15.78 5.54 0.09 -15.83 16 17 N -0.56 -14.37 5.29 -10.96 -0.06 -14.43 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 22 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 27 H 0.05 0.36 7.92 -51.92 -0.41 -0.06 16 28 H 0.06 0.66 7.01 -51.93 -0.36 0.30 16 29 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 30 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 33 H 0.10 0.71 8.05 -51.92 -0.42 0.30 16 34 H 0.40 2.44 8.47 -40.82 -0.35 2.09 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 5.65 8.43 -39.29 -0.33 5.32 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -33.05 375.37 -8.31 -41.36 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.55 Total: 12.07 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.18 Total: 3.84 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.37 Total: -56.08 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.16 Total: -22.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.05 -8.31 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156677796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.539 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds