Wall clock time and date at job start Tue Mar 31 2020 03:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 115.54956 * 2 1 4 4 C 1.52994 * 117.49943 * 214.29496 * 2 1 3 5 5 C 1.52994 * 117.49737 * 145.66975 * 2 1 3 6 6 H 1.08995 * 117.49972 * 215.00386 * 5 2 1 7 7 C 1.50703 * 117.49989 * 0.02562 * 5 2 1 8 8 O 1.21273 * 119.99963 * 359.97438 * 7 5 2 9 9 N 1.34779 * 119.99944 * 179.97438 * 7 5 2 10 10 C 1.46499 * 119.99872 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46900 * 111.00559 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47550 * 180.02562 * 14 13 12 16 16 O 1.21297 * 119.99908 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99950 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99788 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99731 * 0.02562 * 18 17 15 20 20 C 1.38943 * 119.99929 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00181 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00062 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47328 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47708 * 119.99950 * 22 20 18 25 25 H 1.48501 * 109.47148 * 239.99901 * 22 20 18 26 26 H 1.09000 * 109.47277 * 274.33157 * 1 2 3 27 27 H 1.09009 * 109.47415 * 34.33028 * 1 2 3 28 28 H 1.09007 * 109.47316 * 154.32709 * 1 2 3 29 29 H 1.08992 * 109.47169 * 205.66674 * 3 2 1 30 30 H 1.09000 * 109.46988 * 325.67555 * 3 2 1 31 31 H 1.08997 * 109.46716 * 85.66733 * 3 2 1 32 32 H 1.08999 * 117.49881 * 145.02040 * 4 2 1 33 33 H 1.09009 * 117.49736 * 359.97438 * 4 2 1 34 34 H 0.97005 * 119.99680 * 359.97438 * 9 7 5 35 35 H 1.09001 * 109.46813 * 60.00258 * 10 9 7 36 36 H 1.08992 * 109.47397 * 300.00319 * 10 9 7 37 37 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 38 38 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 39 39 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 40 40 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 41 41 H 1.00899 * 111.00176 * 303.95826 * 13 12 11 42 42 H 1.09003 * 109.46962 * 299.99965 * 14 13 12 43 43 H 1.09005 * 109.46918 * 59.99862 * 14 13 12 44 44 H 0.96992 * 120.00015 * 0.02562 * 17 15 14 45 45 H 0.96996 * 120.00021 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7647 5 6 2.2364 -1.1207 0.7654 6 1 3.1712 -0.8746 1.2689 7 6 1.3719 -2.1404 1.4610 8 8 0.1638 -2.0531 1.4014 9 7 1.9415 -3.1495 2.1495 10 6 1.1011 -4.1405 2.8262 11 6 1.9902 -5.1695 3.5274 12 6 1.1126 -6.2048 4.2336 13 7 1.9662 -7.1924 4.9073 14 6 1.1560 -8.2051 5.5973 15 6 2.0640 -9.1982 6.2756 16 8 3.2678 -9.0744 6.1928 17 7 1.5386 -10.2234 6.9751 18 6 2.3648 -11.1267 7.5926 19 1 3.4366 -11.0164 7.5188 20 6 1.8231 -12.1839 8.3133 21 7 0.5189 -12.3178 8.4035 22 14 2.9487 -13.4142 9.1552 23 1 4.3643 -13.0428 8.9036 24 1 2.6865 -13.4055 10.6169 25 1 2.6901 -14.7727 8.6140 26 1 -0.3634 0.0776 1.0247 27 1 -0.3634 0.8487 -0.5796 28 1 -0.3634 -0.9263 -0.4452 29 1 3.1822 1.3088 -0.4451 30 1 1.5809 2.0742 -0.5795 31 1 2.2765 1.7416 1.0247 32 1 3.1715 -0.8755 -1.2680 33 1 1.6111 -1.8591 -1.2674 34 1 2.9079 -3.2195 2.1968 35 1 0.4716 -4.6444 2.0929 36 1 0.4722 -3.6411 3.5630 37 1 2.6190 -5.6689 2.7902 38 1 2.6201 -4.6658 4.2606 39 1 0.4836 -5.7057 4.9708 40 1 0.4830 -6.7084 3.5002 41 1 2.6045 -7.6233 4.2554 42 1 0.5267 -7.7201 6.3436 43 1 0.5273 -8.7228 4.8729 44 1 0.5760 -10.3222 7.0416 45 1 0.1408 -13.0556 8.9069 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156677796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:27 Heat of formation + Delta-G solvation = -87.598113 kcal Electronic energy + Delta-G solvation = -22613.638997 eV Core-core repulsion = 19051.209718 eV Total energy + Delta-G solvation = -3562.429279 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23933 -40.16977 -38.51173 -37.45980 -36.09010 -35.61532 -33.30432 -32.49639 -30.37135 -28.62029 -28.33475 -26.71275 -25.29365 -23.77927 -22.59323 -21.38019 -21.05534 -20.03685 -19.87927 -18.10292 -17.81559 -17.26777 -16.83591 -16.61422 -16.38418 -15.99373 -15.75493 -15.34993 -15.23075 -14.97043 -14.71778 -14.55034 -14.26008 -14.03966 -13.57573 -13.47246 -13.38233 -13.19293 -12.90890 -12.86780 -12.69742 -12.67465 -12.43853 -12.40495 -12.11785 -12.10732 -11.86449 -11.51963 -11.16742 -10.89291 -10.46470 -10.35642 -10.08062 -10.02484 -9.35236 -8.47467 -5.96542 1.36704 1.42143 1.50232 1.56466 2.03902 2.11445 2.29573 2.79574 2.94062 3.19816 3.51392 3.65318 3.73146 3.85853 3.98981 4.11431 4.14260 4.19774 4.23159 4.33310 4.47307 4.55366 4.57595 4.67392 4.69494 4.77255 4.82383 4.84727 4.99657 5.07509 5.09498 5.11218 5.15078 5.19751 5.31092 5.40575 5.44599 5.55226 5.87326 6.08609 6.39621 6.56550 6.58997 7.11645 7.26747 7.55098 8.10072 8.70137 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.061060 B = 0.001676 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.456348 B =16700.562680 C =16997.072088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.105 4.105 3 C -0.113 4.113 4 C -0.136 4.136 5 C -0.193 4.193 6 H 0.147 0.853 7 C 0.533 3.467 8 O -0.576 6.576 9 N -0.718 5.718 10 C 0.128 3.872 11 C -0.114 4.114 12 C 0.063 3.937 13 N -0.683 5.683 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.345 0.655 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 23.507 -17.520 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.170 4.170 4 C -0.173 4.173 5 C -0.214 4.214 6 H 0.164 0.836 7 C 0.321 3.679 8 O -0.456 6.456 9 N -0.369 5.369 10 C 0.004 3.996 11 C -0.153 4.153 12 C -0.066 4.066 13 N -0.316 5.316 14 C -0.069 4.069 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.465 4.465 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.164 0.836 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.016 23.871 -16.937 29.287 hybrid contribution -0.160 -1.617 0.094 1.628 sum 0.857 22.254 -16.842 27.922 Atomic orbital electron populations 1.21259 0.92257 1.00891 1.01193 1.21692 0.95026 0.91916 1.01884 1.21402 1.00667 0.92391 1.02538 1.23289 1.03493 1.00510 0.89994 1.22447 1.02369 1.00188 0.96424 0.83581 1.20227 0.88008 0.81610 0.78062 1.90698 1.16396 1.75773 1.62701 1.45926 1.11303 1.27104 1.52609 1.21157 0.93357 0.89247 0.95869 1.21578 0.98170 0.95751 0.99757 1.21904 0.94786 0.93015 0.96942 1.60058 1.19645 1.17066 1.34811 1.21539 0.94219 0.92242 0.98854 1.20883 0.89395 0.83876 0.83395 1.90486 1.17279 1.76877 1.66340 1.41945 1.09503 1.23772 1.45825 1.19730 0.91629 1.05694 1.29434 0.90242 1.26057 0.97787 0.99646 0.97790 1.69679 1.11283 1.32937 1.42238 0.84847 0.77870 0.77516 0.77948 1.19743 1.19632 1.19573 0.93601 0.91923 0.93734 0.90628 0.91156 0.91977 0.85258 0.89468 0.74859 0.92178 0.92157 0.90435 0.90290 0.90376 0.94103 0.83590 0.87856 0.91518 0.76963 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 8.09 71.98 0.58 -1.19 16 2 C -0.10 -1.40 2.70 -52.18 -0.14 -1.54 16 3 C -0.11 -0.97 9.85 71.98 0.71 -0.26 16 4 C -0.14 -1.50 9.52 30.59 0.29 -1.21 16 5 C -0.19 -2.53 5.91 -11.54 -0.07 -2.59 16 6 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 7 C 0.53 10.40 7.59 87.66 0.67 11.07 16 8 O -0.58 -15.73 13.10 -3.01 -0.04 -15.77 16 9 N -0.72 -11.22 5.56 -463.07 -2.57 -13.80 16 10 C 0.13 2.26 5.67 86.38 0.49 2.75 16 11 C -0.11 -1.98 5.59 30.59 0.17 -1.81 16 12 C 0.06 1.36 5.68 86.30 0.49 1.85 16 13 N -0.68 -20.82 6.13 -517.94 -3.17 -23.99 16 14 C 0.06 2.17 6.17 85.56 0.53 2.70 16 15 C 0.44 20.84 7.82 87.66 0.69 21.52 16 16 O -0.62 -34.55 15.78 -3.08 -0.05 -34.60 16 17 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 18 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 21 N -0.92 -49.77 13.05 21.66 0.28 -49.48 16 22 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H 0.04 1.01 7.26 -2.39 -0.02 0.99 16 27 H 0.06 0.89 7.92 -2.38 -0.02 0.88 16 28 H 0.04 0.95 7.01 -2.38 -0.02 0.94 16 29 H 0.07 0.41 7.90 -2.39 -0.02 0.39 16 30 H 0.07 0.54 7.92 -2.39 -0.02 0.52 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.13 0.77 8.05 -2.39 -0.02 0.76 16 33 H 0.09 1.19 8.05 -2.38 -0.02 1.17 16 34 H 0.41 4.25 8.47 -92.70 -0.79 3.46 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.35 10.88 8.43 -89.70 -0.76 10.12 16 42 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 45 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -72.37 375.37 -0.73 -73.10 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -1.27 Total: 38.02 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.68 Total: 12.74 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -7.09 Total: -118.45 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.09 Total: -50.36 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -72.37 -0.73 -73.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156677796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.499 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds