Wall clock time and date at job start Tue Mar 31 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47132 * 2 1 4 4 N 1.46500 * 109.47016 * 119.99899 * 2 1 3 5 5 C 1.46765 * 124.34725 * 120.00034 * 4 2 1 6 6 C 1.54480 * 105.47306 * 162.96257 * 5 4 2 7 7 H 1.09002 * 110.96988 * 143.53587 * 6 5 4 8 8 C 1.50703 * 110.96952 * 267.26194 * 6 5 4 9 9 O 1.21281 * 119.99846 * 356.90961 * 8 6 5 10 10 N 1.34772 * 119.99649 * 176.91264 * 8 6 5 11 11 C 1.46507 * 119.99737 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47046 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47053 * 180.02562 * 12 11 10 14 14 N 1.46504 * 109.47369 * 180.02562 * 13 12 11 15 15 C 1.36929 * 119.99998 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00427 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99660 * 180.02562 * 15 14 13 18 18 N 1.31616 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99817 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47522 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47101 * 119.99879 * 19 17 15 22 22 H 1.48500 * 109.47289 * 239.99690 * 19 17 15 23 23 C 1.54637 * 101.79655 * 25.39729 * 6 5 4 24 24 C 1.34412 * 124.35131 * 299.97923 * 4 2 1 25 25 O 1.21276 * 124.94311 * 0.40071 * 24 4 2 26 26 H 1.08995 * 109.47605 * 299.99870 * 1 2 3 27 27 H 1.08999 * 109.47088 * 60.00049 * 1 2 3 28 28 H 1.08998 * 109.47132 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47013 * 240.00251 * 2 1 3 30 30 H 1.08996 * 109.47349 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47094 * 299.99947 * 3 2 1 32 32 H 1.09003 * 109.46966 * 60.00223 * 3 2 1 33 33 H 1.09000 * 110.24541 * 43.96685 * 5 4 2 34 34 H 1.08997 * 110.24493 * 281.96407 * 5 4 2 35 35 H 0.96999 * 120.00424 * 359.97438 * 10 8 6 36 36 H 1.08995 * 109.46821 * 299.99728 * 11 10 8 37 37 H 1.09004 * 109.47056 * 60.00255 * 11 10 8 38 38 H 1.08999 * 109.46942 * 300.00002 * 12 11 10 39 39 H 1.08993 * 109.47222 * 60.00082 * 12 11 10 40 40 H 1.09008 * 109.46811 * 299.99908 * 13 12 11 41 41 H 1.08993 * 109.47326 * 59.99795 * 13 12 11 42 42 H 0.97003 * 119.99532 * 0.02562 * 14 13 12 43 43 H 0.97001 * 119.99902 * 180.02562 * 18 17 15 44 44 H 1.09001 * 110.48391 * 93.89928 * 23 6 5 45 45 H 1.08997 * 110.48457 * 216.54082 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8655 -1.8888 1.1727 6 6 3.4727 -1.9920 2.5894 7 1 3.5567 -3.0325 2.9030 8 6 4.8112 -1.3024 2.6541 9 8 5.2908 -0.8144 1.6528 10 7 5.4750 -1.2282 3.8246 11 6 6.7765 -0.5583 3.8874 12 6 7.3100 -0.6136 5.3203 13 6 8.6688 0.0865 5.3860 14 7 9.1799 0.0331 6.7579 15 6 10.3898 0.5985 7.0602 16 1 10.9671 1.0842 6.2875 17 6 10.8743 0.5474 8.3601 18 7 10.1706 -0.0441 9.3020 19 14 12.5245 1.3193 8.7728 20 1 13.1114 1.9180 7.5471 21 1 12.3337 2.3773 9.7972 22 1 13.4401 0.2769 9.3023 23 6 2.4216 -1.2409 3.4394 24 6 1.7483 -0.3081 2.4561 25 8 1.0652 0.6466 2.7610 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.6561 -1.7772 0.4307 34 1 2.2644 -2.7715 0.9547 35 1 5.0912 -1.6182 4.6255 36 1 7.4761 -1.0604 3.2192 37 1 6.6648 0.4820 3.5815 38 1 6.6101 -0.1112 5.9881 39 1 7.4215 -1.6536 5.6266 40 1 9.3688 -0.4155 4.7180 41 1 8.5568 1.1266 5.0798 42 1 8.6615 -0.4035 7.4519 43 1 10.5090 -0.0795 10.2104 44 1 1.6983 -1.9410 3.8575 45 1 2.9077 -0.6735 4.2330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159239884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:29 Heat of formation + Delta-G solvation = -96.547600 kcal Electronic energy + Delta-G solvation = -23869.950757 eV Core-core repulsion = 20307.133399 eV Total energy + Delta-G solvation = -3562.817358 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99688 -40.29947 -37.66776 -37.27937 -35.91851 -35.91489 -33.76954 -31.78112 -30.73204 -28.68951 -28.15875 -27.11010 -24.99785 -23.56095 -23.42761 -22.58595 -21.05857 -19.92727 -19.22846 -18.49733 -17.73782 -17.21614 -16.89229 -16.63883 -16.44778 -16.18235 -15.58268 -15.32388 -15.17285 -15.16864 -14.71991 -14.62638 -14.49245 -14.09077 -13.67298 -13.48126 -13.32275 -13.17126 -12.87284 -12.85289 -12.65152 -12.63696 -12.51464 -12.41346 -12.24393 -12.10598 -12.05033 -12.04468 -11.79952 -10.96794 -10.89202 -10.66071 -10.11474 -9.70043 -9.03027 -7.97896 -5.26932 1.47251 1.47874 1.54232 1.57927 1.58199 2.01486 2.14831 2.55337 3.27926 3.35281 3.36095 3.67508 3.76297 3.86040 3.98312 4.08228 4.08252 4.26115 4.28559 4.37239 4.46397 4.59621 4.64514 4.68696 4.70619 4.72225 4.74582 4.82289 4.85277 4.87235 4.88180 4.91855 5.18303 5.27436 5.27883 5.31019 5.42037 5.48149 5.67936 6.17776 6.25210 6.53392 7.16594 7.21840 7.31637 8.06250 8.30119 9.25737 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.002233 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.110637 B =12534.419862 C =12561.042089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 C -0.164 4.164 4 N -0.613 5.613 5 C 0.112 3.888 6 C -0.112 4.112 7 H 0.174 0.826 8 C 0.512 3.488 9 O -0.578 6.578 10 N -0.715 5.715 11 C 0.134 3.866 12 C -0.118 4.118 13 C 0.151 3.849 14 N -0.747 5.747 15 C -0.248 4.248 16 H 0.074 0.926 17 C -0.076 4.076 18 N -0.968 5.968 19 Si 0.974 3.026 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.140 4.140 24 C 0.501 3.499 25 O -0.577 6.577 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.417 0.583 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.151 0.849 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.145 -9.140 -19.236 30.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 C -0.222 4.222 4 N -0.346 5.346 5 C -0.010 4.010 6 C -0.133 4.133 7 H 0.191 0.809 8 C 0.299 3.701 9 O -0.457 6.457 10 N -0.367 5.367 11 C 0.009 3.991 12 C -0.156 4.156 13 C 0.024 3.976 14 N -0.390 5.390 15 C -0.380 4.380 16 H 0.092 0.908 17 C -0.268 4.268 18 N -0.618 5.618 19 Si 0.803 3.197 20 H -0.192 1.192 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.180 4.180 24 C 0.290 3.710 25 O -0.457 6.457 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.137 0.863 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.208 0.792 43 H 0.061 0.939 44 H 0.169 0.831 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.003 -8.167 -19.937 30.089 hybrid contribution 0.846 0.538 1.168 1.539 sum -20.157 -7.629 -18.769 28.580 Atomic orbital electron populations 1.22097 0.94047 1.02782 1.02657 1.21095 0.94780 0.92543 0.87117 1.22128 1.00536 0.96933 1.02584 1.48575 1.50655 1.29410 1.05947 1.22261 0.94222 0.87935 0.96595 1.22415 0.89693 1.03865 0.97312 0.80862 1.20967 0.87245 0.79276 0.82639 1.90707 1.70088 1.48712 1.36226 1.45899 1.20739 1.58246 1.11802 1.21053 0.84349 0.97134 0.96534 1.21698 0.96247 1.01988 0.95693 1.20687 0.93537 0.97231 0.86134 1.42548 1.21551 1.68578 1.06311 1.19670 0.96380 1.28063 0.93916 0.90788 1.25592 1.02620 1.02605 0.96005 1.69806 1.40156 1.50397 1.01470 0.85059 0.79385 0.77393 0.77828 1.19200 1.21945 1.21755 1.22463 0.98977 0.99288 0.97313 1.21456 0.79891 0.84620 0.85054 1.90680 1.41927 1.30796 1.82321 0.93940 0.89862 0.91303 0.87003 0.93831 0.89549 0.94115 0.89700 0.86308 0.74540 0.91618 0.92848 0.90996 0.90253 0.95883 0.96438 0.79172 0.93870 0.83105 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.20 71.98 0.66 -1.61 16 2 C 0.15 2.33 3.47 44.99 0.16 2.48 16 3 C -0.16 -3.27 9.20 71.98 0.66 -2.61 16 4 N -0.61 -10.41 2.83 -793.98 -2.25 -12.66 16 5 C 0.11 1.21 6.66 86.83 0.58 1.79 16 6 C -0.11 -1.09 3.54 -10.48 -0.04 -1.13 16 7 H 0.17 0.15 8.14 -2.39 -0.02 0.13 16 8 C 0.51 9.98 7.12 87.66 0.62 10.60 16 9 O -0.58 -16.53 15.51 -3.03 -0.05 -16.58 16 10 N -0.71 -13.09 5.37 -463.04 -2.49 -15.57 16 11 C 0.13 3.31 5.67 86.38 0.49 3.80 16 12 C -0.12 -3.33 5.44 30.59 0.17 -3.16 16 13 C 0.15 5.88 6.26 86.38 0.54 6.43 16 14 N -0.75 -37.76 5.60 -343.45 -1.92 -39.69 16 15 C -0.25 -13.99 9.99 84.04 0.84 -13.15 16 16 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 18 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 19 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 C -0.14 -1.66 6.40 30.61 0.20 -1.46 16 24 C 0.50 10.68 7.41 87.92 0.65 11.33 16 25 O -0.58 -17.51 15.12 -3.02 -0.05 -17.56 16 26 H 0.04 0.88 6.78 -2.39 -0.02 0.87 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 1.24 8.07 -2.39 -0.02 1.22 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.05 6.80 -2.39 -0.02 1.04 16 33 H 0.08 1.21 6.98 -2.39 -0.02 1.19 16 34 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.42 5.08 8.47 -92.71 -0.79 4.30 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.38 19.82 7.67 -92.71 -0.71 19.11 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.10 1.36 7.75 -2.39 -0.02 1.35 16 Total: -1.00 -80.24 368.72 1.05 -79.19 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.51 Total: 23.80 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.00 Total: 9.39 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.37 Total: -126.47 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.09 Total: -34.13 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -80.24 1.05 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159239884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.353 kcal (2) G-P(sol) polarization free energy of solvation -80.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds