Wall clock time and date at job start Tue Mar 31 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99710 * 2 1 4 4 H 1.48503 * 109.47037 * 270.00034 * 3 2 1 5 5 H 1.48502 * 109.47269 * 29.99978 * 3 2 1 6 6 H 1.48497 * 109.47385 * 150.00187 * 3 2 1 7 7 C 1.38808 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99802 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00351 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00418 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47131 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46997 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.46997 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46934 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47279 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47266 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00067 * 180.02562 * 16 15 14 18 18 O 1.21283 * 119.99630 * 0.02562 * 17 16 15 19 19 C 1.50691 * 120.00085 * 179.97438 * 17 16 15 20 20 H 1.09003 * 110.22034 * 41.93098 * 19 17 16 21 21 C 1.54480 * 110.24857 * 280.00044 * 19 17 16 22 22 C 1.54627 * 101.76536 * 266.32845 * 21 19 17 23 23 C 1.51286 * 104.19454 * 335.20174 * 22 21 19 24 24 O 1.21279 * 124.93933 * 195.99132 * 23 22 21 25 25 N 1.34413 * 110.11622 * 16.25141 * 23 22 21 26 26 H 0.96994 * 120.00143 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99668 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.47462 * 59.98753 * 10 9 7 29 29 H 1.09010 * 109.46781 * 299.99406 * 10 9 7 30 30 H 1.08997 * 109.47165 * 60.00081 * 11 10 9 31 31 H 1.08997 * 109.47212 * 299.99384 * 11 10 9 32 32 H 1.08993 * 109.46838 * 59.99720 * 12 11 10 33 33 H 1.09006 * 109.46689 * 299.99935 * 12 11 10 34 34 H 1.09003 * 109.47081 * 59.99978 * 13 12 11 35 35 H 1.09001 * 109.47161 * 300.00241 * 13 12 11 36 36 H 1.09003 * 109.46948 * 60.00272 * 14 13 12 37 37 H 1.09001 * 109.47700 * 300.00286 * 14 13 12 38 38 H 1.09003 * 109.46602 * 60.00435 * 15 14 13 39 39 H 1.09001 * 109.47295 * 300.00910 * 15 14 13 40 40 H 0.97002 * 120.00123 * 359.97438 * 16 15 14 41 41 H 1.09003 * 110.97169 * 148.21159 * 21 19 17 42 42 H 1.08996 * 110.99848 * 24.45905 * 21 19 17 43 43 H 1.09004 * 110.48832 * 216.52571 * 22 21 19 44 44 H 1.08997 * 110.48725 * 93.87473 * 22 21 19 45 45 H 0.96999 * 124.35074 * 180.40767 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0640 -4.8197 0.0021 12 6 1.8291 -6.1448 0.0026 13 6 0.8349 -7.3077 0.0036 14 6 1.5999 -8.6326 0.0035 15 6 0.6058 -9.7956 0.0052 16 7 1.3383 -11.0643 0.0057 17 6 0.6645 -12.2316 0.0067 18 8 -0.5483 -12.2315 0.0066 19 6 1.4180 -13.5365 0.0066 20 1 2.2659 -13.4820 0.6895 21 6 1.9023 -13.8742 -1.4209 22 6 0.7530 -14.7688 -1.9403 23 6 0.1346 -15.3444 -0.6853 24 8 -0.6115 -16.3000 -0.6539 25 7 0.5279 -14.6390 0.3892 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 2.6843 -3.7141 0.8920 29 1 2.6855 -3.7149 -0.8879 30 1 0.4377 -4.7626 -0.8882 31 1 0.4371 -4.7614 0.8918 32 1 2.4557 -6.2021 0.8926 33 1 2.4558 -6.2027 -0.8874 34 1 0.2079 -7.2504 -0.8862 35 1 0.2085 -7.2494 0.8938 36 1 2.2272 -8.6901 0.8932 37 1 2.2261 -8.6907 -0.8868 38 1 -0.0218 -9.7384 -0.8842 39 1 -0.0201 -9.7374 0.8958 40 1 2.3083 -11.0643 0.0047 41 1 2.8429 -14.4243 -1.3939 42 1 1.9975 -12.9718 -2.0247 43 1 1.1455 -15.5657 -2.5722 44 1 0.0223 -14.1724 -2.4866 45 1 0.2581 -14.8336 1.3004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180103607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:18 Heat of formation + Delta-G solvation = -86.835498 kcal Electronic energy + Delta-G solvation = -22508.165575 eV Core-core repulsion = 18945.769365 eV Total energy + Delta-G solvation = -3562.396209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.36393 -39.46351 -37.06648 -36.50453 -35.48471 -34.04354 -32.10880 -31.81601 -30.24935 -28.79339 -26.78025 -24.33018 -23.29818 -22.28587 -21.45810 -21.09928 -20.69615 -20.58253 -18.15912 -18.01429 -16.99309 -16.54448 -16.34930 -15.87584 -15.40436 -15.26129 -14.66159 -14.49830 -14.20873 -14.11154 -13.85690 -13.51396 -13.43449 -13.32523 -13.00883 -12.77273 -12.41770 -12.17210 -11.93736 -11.77748 -11.43043 -11.22897 -10.95957 -10.79909 -10.76762 -10.71503 -10.43529 -10.35301 -10.29610 -9.99024 -9.67246 -9.55876 -9.55260 -8.85740 -6.90165 -5.75223 -3.03792 1.99373 2.08731 2.49528 2.94154 3.43884 3.48559 3.50692 3.70162 3.78289 4.03166 4.20458 4.45717 4.47668 4.61516 4.66509 4.71561 4.87656 5.02806 5.13879 5.16365 5.24238 5.30278 5.33090 5.51380 5.59814 5.63523 5.65052 5.87960 5.90558 5.96227 6.08816 6.17530 6.29809 6.30897 6.39244 6.45761 6.46427 6.89488 6.93526 6.94795 7.65836 7.70567 7.75853 8.44112 9.54735 10.14298 10.48676 11.47870 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.062290 B = 0.001538 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.401977 B =18197.650459 C =18363.850548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.117 4.117 14 C -0.130 4.130 15 C 0.116 3.884 16 N -0.726 5.726 17 C 0.495 3.505 18 O -0.524 6.524 19 C 0.113 3.887 20 H 0.115 0.885 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.528 3.472 24 O -0.529 6.529 25 N -0.710 5.710 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -30.865 -1.304 31.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.025 3.975 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.168 4.168 15 C -0.007 4.007 16 N -0.378 5.378 17 C 0.278 3.722 18 O -0.399 6.399 19 C 0.003 3.997 20 H 0.133 0.867 21 C -0.159 4.159 22 C -0.198 4.198 23 C 0.314 3.686 24 O -0.405 6.405 25 N -0.366 5.366 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.558 -31.238 -1.399 31.950 hybrid contribution 0.507 1.138 0.495 1.341 sum 7.066 -30.100 -0.905 30.931 Atomic orbital electron populations 1.69662 1.05126 1.25621 1.57904 1.24754 0.95544 0.97723 1.03128 0.86175 0.78621 0.83806 0.77511 1.21723 1.21750 1.20780 1.19259 0.91051 0.84294 1.42523 0.91213 1.42395 1.05908 1.00155 1.89471 1.20655 0.93646 0.85726 0.97517 1.21733 0.98902 0.93846 1.02015 1.21497 0.97843 0.93866 1.01895 1.21522 0.98454 0.92844 1.02678 1.21829 0.98195 0.93977 1.02809 1.21496 0.94987 0.81456 1.02761 1.46043 1.10532 1.05850 1.75409 1.21025 0.88657 0.85640 0.76842 1.90776 1.13747 1.87380 1.48038 1.21565 0.92846 0.85526 0.99749 0.86745 1.22608 0.99068 1.01565 0.92618 1.22376 0.98983 1.01304 0.97167 1.20820 0.79590 0.81849 0.86330 1.90776 1.35911 1.27473 1.86330 1.45880 1.50655 1.29672 1.10346 0.93530 0.78334 0.96611 0.96598 0.92083 0.92087 0.92099 0.92076 0.91606 0.91621 0.91226 0.91177 0.91209 0.91260 0.76369 0.88322 0.88500 0.87386 0.87362 0.74602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 N -0.74 -19.16 5.60 -59.91 -0.34 -19.49 16 10 C 0.15 3.08 6.26 -4.04 -0.03 3.06 16 11 C -0.13 -1.99 5.33 -26.73 -0.14 -2.14 16 12 C -0.11 -1.28 5.21 -26.73 -0.14 -1.42 16 13 C -0.12 -1.06 5.21 -26.73 -0.14 -1.19 16 14 C -0.13 -0.82 5.33 -26.73 -0.14 -0.96 16 15 C 0.12 0.81 5.67 -4.04 -0.02 0.79 16 16 N -0.73 -3.63 5.56 -60.30 -0.33 -3.96 16 17 C 0.49 3.49 7.01 -10.99 -0.08 3.41 16 18 O -0.52 -6.41 16.56 5.56 0.09 -6.32 16 19 C 0.11 0.43 3.92 -68.17 -0.27 0.17 16 20 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 21 C -0.12 -0.26 6.69 -25.10 -0.17 -0.43 16 22 C -0.16 -0.81 6.85 -26.74 -0.18 -0.99 16 23 C 0.53 4.77 8.43 -10.86 -0.09 4.67 16 24 O -0.53 -7.19 18.03 5.56 0.10 -7.09 16 25 N -0.71 -4.67 5.46 -53.88 -0.29 -4.96 16 26 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 0.72 8.47 -40.82 -0.35 0.38 16 41 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 42 H 0.10 0.13 7.89 -51.93 -0.41 -0.28 16 43 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.41 2.45 8.96 -40.82 -0.37 2.09 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -37.92 375.96 -8.80 -46.72 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.74 Total: 2.47 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.65 Total: -2.62 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.24 Total: -56.37 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.19 Total: -13.40 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.92 -8.80 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180103607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.117 kcal (2) G-P(sol) polarization free energy of solvation -37.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds