Wall clock time and date at job start Tue Mar 31 2020 03:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 120.00229 * 2 1 4 4 N 1.34777 * 120.00009 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00205 * 180.02562 * 4 2 1 6 6 H 1.09007 * 109.47130 * 34.99639 * 5 4 2 7 7 C 1.50695 * 109.47327 * 154.99649 * 5 4 2 8 8 O 1.21282 * 120.00075 * 39.38697 * 7 5 4 9 9 N 1.34777 * 120.00175 * 219.38237 * 7 5 4 10 10 C 1.47023 * 125.65024 * 355.35970 * 9 7 5 11 11 C 1.54317 * 107.27144 * 181.02281 * 10 9 7 12 12 C 1.55151 * 102.94584 * 22.19538 * 11 10 9 13 13 H 1.09006 * 111.04013 * 82.58089 * 12 11 10 14 14 N 1.46497 * 111.00496 * 206.42308 * 12 11 10 15 15 C 1.36935 * 120.00155 * 267.19072 * 14 12 11 16 16 H 1.08001 * 119.99926 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00138 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00126 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99970 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46800 * 90.00121 * 19 17 15 21 21 H 1.48498 * 109.47056 * 209.99946 * 19 17 15 22 22 H 1.48496 * 109.46982 * 330.00383 * 19 17 15 23 23 C 1.47421 * 125.64776 * 175.31663 * 9 7 5 24 24 C 1.52998 * 109.47243 * 275.00375 * 5 4 2 25 25 C 1.52995 * 109.47347 * 64.03044 * 24 5 4 26 26 C 1.52997 * 109.47390 * 184.03756 * 24 5 4 27 27 H 1.08999 * 109.46957 * 269.99966 * 1 2 3 28 28 H 1.09003 * 109.46934 * 30.00415 * 1 2 3 29 29 H 1.09005 * 109.46608 * 150.00171 * 1 2 3 30 30 H 0.96997 * 120.00083 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.88073 * 300.44301 * 10 9 7 32 32 H 1.08998 * 109.88026 * 61.60209 * 10 9 7 33 33 H 1.09001 * 110.72261 * 263.82850 * 11 10 9 34 34 H 1.09007 * 110.71816 * 140.55988 * 11 10 9 35 35 H 0.96999 * 119.99978 * 86.92273 * 14 12 11 36 36 H 0.97002 * 120.00017 * 180.02562 * 18 17 15 37 37 H 1.09007 * 110.36813 * 37.07203 * 23 9 7 38 38 H 1.08993 * 110.36953 * 274.74484 * 23 9 7 39 39 H 1.09008 * 109.46632 * 304.03133 * 24 5 4 40 40 H 1.09000 * 109.47036 * 60.00713 * 25 24 5 41 41 H 1.09008 * 109.47289 * 180.02562 * 25 24 5 42 42 H 1.09001 * 109.47449 * 300.00456 * 25 24 5 43 43 H 1.08999 * 109.47369 * 55.76601 * 26 24 5 44 44 H 1.09000 * 109.47629 * 175.76793 * 26 24 5 45 45 H 1.08999 * 109.46961 * 295.76698 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0091 -0.3252 0.5905 7 6 4.1480 -2.4547 0.6021 8 8 3.5849 -3.4999 0.3541 9 7 5.2229 -2.4448 1.4151 10 6 6.0544 -1.2718 1.7221 11 6 7.1774 -1.7417 2.6704 12 6 7.2493 -3.2669 2.3950 13 1 7.8521 -3.4771 1.5114 14 7 7.7642 -3.9875 3.5620 15 6 9.1042 -4.2485 3.6691 16 1 9.7815 -3.9228 2.8935 17 6 9.5920 -4.9318 4.7746 18 7 10.8799 -5.1822 4.8779 19 14 8.4205 -5.4946 6.1165 20 1 7.9264 -6.8592 5.8018 21 1 9.1330 -5.5142 7.4193 22 1 7.2710 -4.5578 6.1949 23 6 5.7591 -3.6083 2.1446 24 6 4.1565 -1.0418 -1.4357 25 6 3.7313 0.3103 -2.0119 26 6 5.6831 -1.1429 -1.4452 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6959 -2.0072 0.0005 31 1 6.4867 -0.8735 0.8042 32 1 5.4509 -0.5077 2.2120 33 1 6.9103 -1.5496 3.7095 34 1 8.1219 -1.2594 2.4184 35 1 7.1565 -4.2763 4.2606 36 1 11.2207 -5.6600 5.6502 37 1 5.6732 -4.5094 1.5373 38 1 5.2351 -3.7367 3.0916 39 1 3.7355 -1.8438 -2.0422 40 1 4.1523 1.1122 -1.4054 41 1 4.0947 0.3995 -3.0357 42 1 2.6437 0.3823 -2.0051 43 1 5.9886 -2.0733 -0.9665 44 1 6.0418 -1.1290 -2.4744 45 1 6.1065 -0.2984 -0.9014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187246417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:34 Heat of formation + Delta-G solvation = -58.939791 kcal Electronic energy + Delta-G solvation = -25152.930908 eV Core-core repulsion = 21591.744347 eV Total energy + Delta-G solvation = -3561.186561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91064 -39.48429 -37.62522 -36.11727 -34.39014 -33.69550 -31.72041 -30.36937 -29.93235 -28.69264 -27.17413 -26.58500 -23.60650 -22.71828 -21.18736 -20.73347 -20.28064 -19.27909 -17.89633 -17.60614 -16.77797 -16.49665 -16.35421 -15.75758 -15.26901 -14.70473 -14.22304 -14.13326 -13.83150 -13.64548 -13.54239 -13.11282 -12.98439 -12.79687 -12.66458 -12.53622 -12.45297 -12.25323 -12.17059 -11.90559 -11.68634 -11.50924 -11.22820 -11.05928 -10.88559 -10.75364 -10.51119 -10.14679 -10.14089 -9.94760 -9.69232 -9.29849 -9.04460 -8.61240 -7.41747 -5.86859 -3.24963 2.26532 2.40001 2.69812 3.22736 3.31477 3.34611 3.40349 4.23745 4.50295 4.50330 4.58870 4.69938 4.83781 4.88272 4.98009 5.06070 5.07635 5.13579 5.19969 5.31128 5.43351 5.48805 5.49274 5.52330 5.56447 5.71554 5.72678 5.78567 5.81218 5.89688 6.01918 6.03844 6.11277 6.18121 6.23406 6.33291 6.46666 6.70724 7.20855 7.46496 7.86320 7.92030 8.00767 8.31326 9.07601 9.79921 9.97637 11.30772 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.003380 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.480322 B = 8282.689180 C = 8700.289116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.540 6.540 4 N -0.715 5.715 5 C 0.134 3.866 6 H 0.107 0.893 7 C 0.528 3.472 8 O -0.543 6.543 9 N -0.605 5.605 10 C 0.089 3.911 11 C -0.155 4.155 12 C 0.178 3.822 13 H 0.077 0.923 14 N -0.737 5.737 15 C -0.251 4.251 16 H 0.093 0.907 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.884 3.116 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.093 3.907 24 C -0.096 4.096 25 C -0.136 4.136 26 C -0.156 4.156 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.409 0.591 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.363 0.637 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.827 10.933 -11.801 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.417 6.417 4 N -0.369 5.369 5 C 0.026 3.974 6 H 0.125 0.875 7 C 0.315 3.685 8 O -0.420 6.420 9 N -0.339 5.339 10 C -0.034 4.034 11 C -0.196 4.196 12 C 0.066 3.934 13 H 0.095 0.905 14 N -0.379 5.379 15 C -0.380 4.380 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.576 5.576 19 Si 0.714 3.286 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.030 4.030 24 C -0.116 4.116 25 C -0.193 4.193 26 C -0.214 4.214 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.245 0.755 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.197 0.803 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.480 11.082 -11.984 24.656 hybrid contribution -0.922 -0.828 1.180 1.711 sum -19.402 10.254 -10.804 24.460 Atomic orbital electron populations 1.21883 0.91364 1.04966 1.04954 1.20788 0.90638 0.83268 0.75338 1.90742 1.70542 1.31257 1.49185 1.45912 1.05815 1.09682 1.75525 1.20968 0.81645 0.96752 0.98063 0.87520 1.20110 0.79756 0.90475 0.78178 1.90698 1.57639 1.33033 1.60639 1.48404 1.28060 1.12317 1.45070 1.22383 0.92943 0.87982 1.00079 1.23401 0.96951 1.00271 0.98946 1.21268 0.90561 0.89674 0.91891 0.90501 1.42607 1.06452 1.67806 1.21004 1.19037 0.82218 1.30944 1.05845 0.88954 1.24674 0.95618 1.00229 0.98179 1.69693 1.11447 1.45624 1.30845 0.86573 0.80612 0.78934 0.82513 1.20894 1.21595 1.20301 1.22661 0.95642 0.88618 0.96067 1.21429 0.96694 0.99725 0.93798 1.21855 1.01649 0.95695 1.00103 1.22029 0.94058 1.02525 1.02767 0.88737 0.88730 0.90070 0.75487 0.90687 0.91768 0.90665 0.90022 0.80324 0.92866 0.90083 0.91514 0.90334 0.91790 0.92990 0.92572 0.91939 0.91719 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.30 36.01 0.37 -0.62 16 2 C 0.51 5.02 6.46 -10.99 -0.07 4.95 16 3 O -0.54 -7.08 14.23 5.55 0.08 -7.00 16 4 N -0.72 -7.11 5.00 -54.93 -0.27 -7.38 16 5 C 0.13 1.52 1.95 -69.08 -0.13 1.39 16 6 H 0.11 1.27 6.27 -51.92 -0.33 0.94 16 7 C 0.53 7.29 5.63 -10.99 -0.06 7.22 16 8 O -0.54 -8.93 16.56 5.56 0.09 -8.83 16 9 N -0.61 -8.39 2.91 -170.53 -0.50 -8.88 16 10 C 0.09 1.09 5.73 -3.07 -0.02 1.07 16 11 C -0.15 -2.30 6.65 -24.90 -0.17 -2.47 16 12 C 0.18 3.14 3.71 -65.78 -0.24 2.89 16 13 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 14 N -0.74 -16.34 5.05 -51.35 -0.26 -16.60 16 15 C -0.25 -6.72 10.44 -15.06 -0.16 -6.88 16 16 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 19 Si 0.88 21.37 27.74 -169.99 -4.72 16.66 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.27 6.51 56.52 0.37 -5.90 16 23 C 0.09 1.48 6.58 -2.53 -0.02 1.47 16 24 C -0.10 -1.00 2.70 -90.62 -0.24 -1.24 16 25 C -0.14 -1.36 7.78 37.16 0.29 -1.07 16 26 C -0.16 -1.55 7.70 37.16 0.29 -1.27 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.41 3.68 8.02 -40.82 -0.33 3.35 16 31 H 0.08 0.80 5.19 -51.93 -0.27 0.53 16 32 H 0.06 0.71 7.74 -51.93 -0.40 0.31 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 35 H 0.36 7.98 5.62 -40.82 -0.23 7.75 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.08 1.35 7.99 -51.93 -0.42 0.93 16 38 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 39 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 41 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 42 H 0.06 0.60 5.67 -51.93 -0.29 0.30 16 43 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -32.51 352.25 -6.91 -39.42 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.15 Total: 9.26 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.26 Total: 5.62 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.25 Total: -60.43 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.17 Total: -15.83 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.72 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.51 -6.91 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187246417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.520 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds