Wall clock time and date at job start Tue Mar 31 2020 03:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 120.00229 * 2 1 4 4 N 1.34777 * 120.00009 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00205 * 180.02562 * 4 2 1 6 6 H 1.09007 * 109.47130 * 34.99639 * 5 4 2 7 7 C 1.50695 * 109.47327 * 154.99649 * 5 4 2 8 8 O 1.21282 * 120.00075 * 39.38697 * 7 5 4 9 9 N 1.34777 * 120.00175 * 219.38237 * 7 5 4 10 10 C 1.47023 * 125.65024 * 355.35970 * 9 7 5 11 11 C 1.54317 * 107.27144 * 181.02281 * 10 9 7 12 12 C 1.55151 * 102.94584 * 22.19538 * 11 10 9 13 13 H 1.09006 * 111.04013 * 82.58089 * 12 11 10 14 14 N 1.46497 * 111.00496 * 206.42308 * 12 11 10 15 15 C 1.36935 * 120.00155 * 267.19072 * 14 12 11 16 16 H 1.08001 * 119.99926 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00138 * 180.02562 * 15 14 12 18 18 N 1.31616 * 120.00126 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99970 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46800 * 90.00121 * 19 17 15 21 21 H 1.48498 * 109.47056 * 209.99946 * 19 17 15 22 22 H 1.48496 * 109.46982 * 330.00383 * 19 17 15 23 23 C 1.47421 * 125.64776 * 175.31663 * 9 7 5 24 24 C 1.52998 * 109.47243 * 275.00375 * 5 4 2 25 25 C 1.52995 * 109.47347 * 64.03044 * 24 5 4 26 26 C 1.52997 * 109.47390 * 184.03756 * 24 5 4 27 27 H 1.08999 * 109.46957 * 269.99966 * 1 2 3 28 28 H 1.09003 * 109.46934 * 30.00415 * 1 2 3 29 29 H 1.09005 * 109.46608 * 150.00171 * 1 2 3 30 30 H 0.96997 * 120.00083 * 0.02562 * 4 2 1 31 31 H 1.08997 * 109.88073 * 300.44301 * 10 9 7 32 32 H 1.08998 * 109.88026 * 61.60209 * 10 9 7 33 33 H 1.09001 * 110.72261 * 263.82850 * 11 10 9 34 34 H 1.09007 * 110.71816 * 140.55988 * 11 10 9 35 35 H 0.96999 * 119.99978 * 86.92273 * 14 12 11 36 36 H 0.97002 * 120.00017 * 180.02562 * 18 17 15 37 37 H 1.09007 * 110.36813 * 37.07203 * 23 9 7 38 38 H 1.08993 * 110.36953 * 274.74484 * 23 9 7 39 39 H 1.09008 * 109.46632 * 304.03133 * 24 5 4 40 40 H 1.09000 * 109.47036 * 60.00713 * 25 24 5 41 41 H 1.09008 * 109.47289 * 180.02562 * 25 24 5 42 42 H 1.09001 * 109.47449 * 300.00456 * 25 24 5 43 43 H 1.08999 * 109.47369 * 55.76601 * 26 24 5 44 44 H 1.09000 * 109.47629 * 175.76793 * 26 24 5 45 45 H 1.08999 * 109.46961 * 295.76698 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0091 -0.3252 0.5905 7 6 4.1480 -2.4547 0.6021 8 8 3.5849 -3.4999 0.3541 9 7 5.2229 -2.4448 1.4151 10 6 6.0544 -1.2718 1.7221 11 6 7.1774 -1.7417 2.6704 12 6 7.2493 -3.2669 2.3950 13 1 7.8521 -3.4771 1.5114 14 7 7.7642 -3.9875 3.5620 15 6 9.1042 -4.2485 3.6691 16 1 9.7815 -3.9228 2.8935 17 6 9.5920 -4.9318 4.7746 18 7 10.8799 -5.1822 4.8779 19 14 8.4205 -5.4946 6.1165 20 1 7.9264 -6.8592 5.8018 21 1 9.1330 -5.5142 7.4193 22 1 7.2710 -4.5578 6.1949 23 6 5.7591 -3.6083 2.1446 24 6 4.1565 -1.0418 -1.4357 25 6 3.7313 0.3103 -2.0119 26 6 5.6831 -1.1429 -1.4452 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6959 -2.0072 0.0005 31 1 6.4867 -0.8735 0.8042 32 1 5.4509 -0.5077 2.2120 33 1 6.9103 -1.5496 3.7095 34 1 8.1219 -1.2594 2.4184 35 1 7.1565 -4.2763 4.2606 36 1 11.2207 -5.6600 5.6502 37 1 5.6732 -4.5094 1.5373 38 1 5.2351 -3.7367 3.0916 39 1 3.7355 -1.8438 -2.0422 40 1 4.1523 1.1122 -1.4054 41 1 4.0947 0.3995 -3.0357 42 1 2.6437 0.3823 -2.0051 43 1 5.9886 -2.0733 -0.9665 44 1 6.0418 -1.1290 -2.4744 45 1 6.1065 -0.2984 -0.9014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187246417.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:34 Heat of formation + Delta-G solvation = -82.423347 kcal Electronic energy + Delta-G solvation = -25153.949231 eV Core-core repulsion = 21591.744347 eV Total energy + Delta-G solvation = -3562.204884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.90675 -40.45758 -38.88101 -37.04762 -36.08687 -34.53712 -33.56625 -31.49269 -30.88484 -29.92254 -28.12753 -27.51355 -25.27724 -24.09802 -22.05568 -21.85406 -21.48455 -20.29045 -19.76974 -18.66315 -17.79503 -17.57395 -17.29799 -16.78554 -16.28883 -16.26442 -15.68022 -15.34512 -14.95285 -14.77929 -14.60922 -14.45181 -14.11196 -13.74938 -13.60496 -13.53585 -13.51576 -13.31069 -13.21785 -13.10707 -12.88221 -12.71417 -12.56165 -12.29582 -12.15686 -12.06816 -11.85315 -11.77223 -11.60074 -11.06293 -10.99995 -10.93314 -10.16081 -9.77285 -9.36530 -8.03269 -5.38599 1.26202 1.38861 1.41819 1.48360 1.60033 1.66319 2.36064 2.47817 3.18285 3.30138 3.46499 3.70419 3.75400 3.82209 3.91269 3.95450 4.16191 4.18842 4.22454 4.31459 4.40117 4.53170 4.57371 4.62255 4.67191 4.75224 4.76856 4.88459 4.91848 4.95024 5.04556 5.09916 5.11287 5.19862 5.24071 5.32056 5.35840 5.42449 5.75594 6.19777 6.34982 6.47371 6.87737 7.04670 7.18590 7.78428 7.97040 9.17635 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026699 B = 0.003380 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.480322 B = 8282.689180 C = 8700.289116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.509 3.491 3 O -0.575 6.575 4 N -0.714 5.714 5 C 0.140 3.860 6 H 0.106 0.894 7 C 0.530 3.470 8 O -0.570 6.570 9 N -0.605 5.605 10 C 0.096 3.904 11 C -0.145 4.145 12 C 0.169 3.831 13 H 0.067 0.933 14 N -0.741 5.741 15 C -0.230 4.230 16 H 0.063 0.937 17 C -0.060 4.060 18 N -0.981 5.981 19 Si 0.951 3.049 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.250 1.250 23 C 0.103 3.897 24 C -0.092 4.092 25 C -0.127 4.127 26 C -0.155 4.155 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.414 0.586 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.367 0.633 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.075 0.925 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.430 12.123 -12.138 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.455 6.455 4 N -0.368 5.368 5 C 0.032 3.968 6 H 0.124 0.876 7 C 0.318 3.682 8 O -0.450 6.450 9 N -0.338 5.338 10 C -0.026 4.026 11 C -0.186 4.186 12 C 0.059 3.941 13 H 0.085 0.915 14 N -0.384 5.384 15 C -0.361 4.361 16 H 0.081 0.919 17 C -0.251 4.251 18 N -0.631 5.631 19 Si 0.778 3.222 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.175 1.175 23 C -0.021 4.021 24 C -0.112 4.112 25 C -0.184 4.184 26 C -0.212 4.212 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.201 0.799 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.148 12.309 -12.359 27.413 hybrid contribution -0.108 -1.166 1.158 1.647 sum -21.256 11.142 -11.201 26.485 Atomic orbital electron populations 1.21917 0.88058 1.06320 1.06189 1.21507 0.92139 0.82411 0.74062 1.90727 1.71570 1.32355 1.50852 1.45967 1.05181 1.10228 1.75393 1.20892 0.82720 0.94878 0.98356 0.87625 1.20525 0.79156 0.90968 0.77501 1.90686 1.58468 1.34279 1.61542 1.48412 1.28339 1.12031 1.44975 1.22423 0.92101 0.87579 1.00473 1.23219 0.98256 0.97573 0.99542 1.21409 0.91445 0.91214 0.89983 0.91531 1.42545 1.04728 1.68599 1.22517 1.18990 0.83835 1.28924 1.04370 0.91920 1.25455 0.97184 1.01420 1.01073 1.69868 1.13763 1.47680 1.31829 0.85477 0.79076 0.78831 0.78783 1.20708 1.22380 1.17463 1.22374 0.94263 0.89110 0.96306 1.21402 0.96941 0.99828 0.93027 1.21760 1.01143 0.94908 1.00615 1.22020 0.93751 1.01929 1.03533 0.87411 0.88193 0.87933 0.74867 0.88808 0.89723 0.90968 0.89843 0.79923 0.93292 0.91144 0.91221 0.90759 0.92646 0.91702 0.93221 0.93624 0.90595 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.30 71.24 0.73 -0.72 16 2 C 0.51 8.95 6.46 87.66 0.57 9.52 16 3 O -0.58 -14.16 14.23 -3.05 -0.04 -14.21 16 4 N -0.71 -12.81 5.00 -446.09 -2.23 -15.04 16 5 C 0.14 2.93 1.95 44.24 0.09 3.02 16 6 H 0.11 2.27 6.27 -2.38 -0.01 2.25 16 7 C 0.53 13.80 5.63 87.66 0.49 14.29 16 8 O -0.57 -18.12 16.56 -3.04 -0.05 -18.17 16 9 N -0.60 -15.71 2.91 -811.81 -2.36 -18.07 16 10 C 0.10 2.12 5.73 86.73 0.50 2.61 16 11 C -0.15 -4.08 6.65 31.78 0.21 -3.87 16 12 C 0.17 5.85 3.71 46.38 0.17 6.02 16 13 H 0.07 2.44 8.09 -2.38 -0.02 2.42 16 14 N -0.74 -32.38 5.05 -316.37 -1.60 -33.98 16 15 C -0.23 -12.49 10.44 84.03 0.88 -11.61 16 16 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 17 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 18 N -0.98 -61.48 13.97 21.65 0.30 -61.17 16 19 Si 0.95 44.14 27.74 68.60 1.90 46.04 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.25 -10.36 6.51 99.48 0.65 -9.71 16 23 C 0.10 3.17 6.58 86.86 0.57 3.74 16 24 C -0.09 -1.74 2.70 -10.80 -0.03 -1.77 16 25 C -0.13 -2.30 7.78 71.98 0.56 -1.74 16 26 C -0.15 -2.78 7.70 71.98 0.55 -2.22 16 27 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.41 6.66 8.02 -92.71 -0.74 5.91 16 31 H 0.09 1.75 5.19 -2.39 -0.01 1.74 16 32 H 0.08 1.60 7.74 -2.39 -0.02 1.59 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.37 15.49 5.62 -92.71 -0.52 14.97 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.07 2.31 7.99 -2.38 -0.02 2.29 16 38 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 39 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.05 1.11 7.79 -2.39 -0.02 1.09 16 41 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.05 0.97 5.67 -2.39 -0.01 0.96 16 43 H 0.04 0.98 6.32 -2.39 -0.02 0.96 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 1.17 6.72 -2.39 -0.02 1.16 16 Total: -1.00 -71.11 352.25 1.37 -69.75 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.32 Total: 30.52 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.76 Total: 14.33 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -5.88 Total: -128.26 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.09 Total: -32.38 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.90 Total: 46.04 kcal Total: -71.11 1.37 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187246417.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.677 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds