Wall clock time and date at job start Tue Mar 31 2020 03:47:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47052 * 2 1
4 4 C 1.50697 * 109.46816 * 119.99768 * 2 1 3
5 5 O 1.21285 * 120.00141 * 335.61892 * 4 2 1
6 6 N 1.34776 * 119.99884 * 155.62187 * 4 2 1
7 7 C 1.47029 * 125.64743 * 185.83640 * 6 4 2
8 8 C 1.54378 * 107.28414 * 178.94251 * 7 6 4
9 9 C 1.55154 * 102.92450 * 337.86526 * 8 7 6
10 10 H 1.09002 * 111.00431 * 277.36216 * 9 8 7
11 11 N 1.46897 * 111.00773 * 153.54580 * 9 8 7
12 12 C 1.46902 * 110.99958 * 60.96145 * 11 9 8
13 13 C 1.46892 * 111.00160 * 184.91591 * 11 9 8
14 14 C 1.50704 * 109.47030 * 169.99907 * 13 11 9
15 15 O 1.21293 * 120.00274 * 0.02562 * 14 13 11
16 16 N 1.34773 * 120.00154 * 180.02562 * 14 13 11
17 17 C 1.37095 * 120.00430 * 180.02562 * 16 14 13
18 18 H 1.07999 * 119.99570 * 359.97438 * 17 16 14
19 19 C 1.38949 * 120.00326 * 180.02562 * 17 16 14
20 20 N 1.31412 * 120.00228 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00012 * 179.97438 * 19 17 16
22 22 H 1.48508 * 109.47010 * 60.00104 * 21 19 17
23 23 H 1.48501 * 109.47248 * 179.97438 * 21 19 17
24 24 H 1.48502 * 109.47385 * 299.99950 * 21 19 17
25 25 C 1.47427 * 125.65065 * 5.88466 * 6 4 2
26 26 H 1.08999 * 109.47164 * 300.00337 * 1 2 3
27 27 H 1.09000 * 109.46950 * 60.00486 * 1 2 3
28 28 H 1.09002 * 109.47184 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.47164 * 239.99663 * 2 1 3
30 30 H 1.09006 * 109.47170 * 303.11752 * 3 2 1
31 31 H 1.09002 * 109.47452 * 63.11042 * 3 2 1
32 32 H 1.09005 * 109.47508 * 183.11181 * 3 2 1
33 33 H 1.08990 * 109.88176 * 298.39279 * 7 6 4
34 34 H 1.08998 * 109.87881 * 59.40702 * 7 6 4
35 35 H 1.08997 * 110.75216 * 219.49086 * 8 7 6
36 36 H 1.08998 * 110.70063 * 96.20960 * 8 7 6
37 37 H 1.09000 * 109.47131 * 189.76408 * 12 11 9
38 38 H 1.09006 * 109.46990 * 309.76016 * 12 11 9
39 39 H 1.09003 * 109.46848 * 69.75793 * 12 11 9
40 40 H 1.09005 * 109.47160 * 50.00418 * 13 11 9
41 41 H 1.08994 * 109.47653 * 290.00223 * 13 11 9
42 42 H 0.97007 * 119.99817 * 359.97438 * 16 14 13
43 43 H 0.96995 * 120.00136 * 180.02562 * 20 19 17
44 44 H 1.08994 * 110.36726 * 85.24906 * 25 6 4
45 45 H 1.09004 * 110.45542 * 322.97396 * 25 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 1.3324 -0.7801 2.2186
6 7 3.2592 -1.2681 1.2330
7 6 3.8247 -2.0899 2.3131
8 6 5.2355 -2.5283 1.8652
9 6 5.1655 -2.3980 0.3207
10 1 4.7062 -3.2801 -0.1254
11 7 6.4980 -2.1568 -0.2484
12 6 7.4078 -3.2706 0.0510
13 6 6.4171 -1.9176 -1.6955
14 6 7.7526 -1.4354 -2.2004
15 8 8.6807 -1.3043 -1.4306
16 7 7.9157 -1.1497 -3.5074
17 6 9.1308 -0.7115 -3.9668
18 1 9.9571 -0.5948 -3.2813
19 6 9.2988 -0.4165 -5.3142
20 7 8.2932 -0.5580 -6.1483
21 14 10.9542 0.1813 -5.9401
22 1 11.9882 -0.8491 -5.6667
23 1 10.8723 0.4237 -7.4029
24 1 11.3185 1.4438 -5.2483
25 6 4.2570 -1.1544 0.1536
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5139 -0.8899
30 1 1.6317 1.9722 -0.8608
31 1 1.7229 1.9400 0.9165
32 1 3.1286 1.4431 -0.0558
33 1 3.8919 -1.5029 3.2290
34 1 3.1978 -2.9659 2.4794
35 1 5.4299 -3.5604 2.1568
36 1 5.9943 -1.8614 2.2745
37 1 8.4248 -2.9939 -0.2271
38 1 7.3707 -3.4935 1.1174
39 1 7.1030 -4.1509 -0.5150
40 1 5.6580 -1.1617 -1.8969
41 1 6.1501 -2.8447 -2.2026
42 1 7.1736 -1.2549 -4.1231
43 1 8.4106 -0.3524 -7.0889
44 1 4.8394 -0.2406 0.2701
45 1 3.7679 -1.1701 -0.8204
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001188907369.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:47:16
Heat of formation + Delta-G solvation = -66.986702 kcal
Electronic energy + Delta-G solvation = -24672.042995 eV
Core-core repulsion = 21110.507494 eV
Total energy + Delta-G solvation = -3561.535501 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.44269 -38.87113 -37.74412 -35.43751 -34.62658 -33.85352 -31.33090 -31.01628
-28.97433 -27.94595 -27.33918 -24.99271 -24.69016 -23.53773 -21.81525 -20.28299
-19.29373 -18.94763 -17.88718 -17.56596 -16.69165 -16.11981 -15.53068 -15.14285
-14.69332 -14.63094 -14.55513 -14.03715 -13.90835 -13.72739 -13.42069 -13.31382
-13.11399 -12.95265 -12.59463 -12.30791 -12.13007 -12.07640 -11.80291 -11.56308
-11.41695 -11.35586 -11.30616 -11.26747 -11.02559 -10.97153 -10.79354 -10.46464
-10.24282 -9.84830 -9.50344 -8.79049 -8.54035 -8.02987 -7.92740 -6.44813
-3.85715 2.50341 2.77568 3.17742 3.23989 3.27997 3.83479 3.86823
4.16396 4.29218 4.34348 4.56890 4.72445 4.79180 4.89694 5.01899
5.06351 5.13036 5.18970 5.24596 5.42145 5.45835 5.53393 5.56421
5.59754 5.62439 5.63812 5.69517 5.75288 5.80652 5.82746 5.90224
5.97195 5.99960 6.04956 6.14715 6.23225 6.51018 7.13433 7.27799
7.35934 7.52167 8.02643 8.02878 8.58279 9.14995 9.50737 10.02498
10.72775
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.018481 B = 0.003342 C = 0.002938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1514.680187 B = 8375.329976 C = 9527.906094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.113 4.113
3 C -0.143 4.143
4 C 0.534 3.466
5 O -0.545 6.545
6 N -0.617 5.617
7 C 0.110 3.890
8 C -0.123 4.123
9 C 0.068 3.932
10 H 0.055 0.945
11 N -0.507 5.507
12 C 0.023 3.977
13 C 0.043 3.957
14 C 0.444 3.556
15 O -0.577 6.577
16 N -0.563 5.563
17 C -0.300 4.300
18 H 0.103 0.897
19 C 0.023 3.977
20 N -0.902 5.902
21 Si 0.930 3.070
22 H -0.274 1.274
23 H -0.284 1.284
24 H -0.273 1.273
25 C 0.105 3.895
26 H 0.066 0.934
27 H 0.063 0.937
28 H 0.056 0.944
29 H 0.092 0.908
30 H 0.070 0.930
31 H 0.061 0.939
32 H 0.063 0.937
33 H 0.069 0.931
34 H 0.066 0.934
35 H 0.081 0.919
36 H 0.091 0.909
37 H 0.099 0.901
38 H 0.061 0.939
39 H 0.017 0.983
40 H 0.087 0.913
41 H 0.049 0.951
42 H 0.392 0.608
43 H 0.272 0.728
44 H 0.087 0.913
45 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.473 -2.553 9.650 15.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.134 4.134
3 C -0.200 4.200
4 C 0.323 3.677
5 O -0.422 6.422
6 N -0.352 5.352
7 C -0.013 4.013
8 C -0.161 4.161
9 C -0.042 4.042
10 H 0.073 0.927
11 N -0.231 5.231
12 C -0.125 4.125
13 C -0.089 4.089
14 C 0.229 3.771
15 O -0.461 6.461
16 N -0.200 5.200
17 C -0.429 4.429
18 H 0.120 0.880
19 C -0.178 4.178
20 N -0.543 5.543
21 Si 0.757 3.243
22 H -0.199 1.199
23 H -0.210 1.210
24 H -0.199 1.199
25 C -0.019 4.019
26 H 0.085 0.915
27 H 0.082 0.918
28 H 0.075 0.925
29 H 0.110 0.890
30 H 0.089 0.911
31 H 0.080 0.920
32 H 0.082 0.918
33 H 0.087 0.913
34 H 0.084 0.916
35 H 0.099 0.901
36 H 0.110 0.890
37 H 0.117 0.883
38 H 0.080 0.920
39 H 0.035 0.965
40 H 0.105 0.895
41 H 0.067 0.933
42 H 0.225 0.775
43 H 0.082 0.918
44 H 0.105 0.895
45 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -12.114 -2.007 10.708 16.292
hybrid contribution 0.074 -0.576 -1.308 1.431
sum -12.040 -2.583 9.400 15.492
Atomic orbital electron populations
1.21649 0.92481 1.02470 1.02542 1.21291 0.98128 0.97713 0.96245
1.21748 1.01740 0.93587 1.02969 1.20420 0.79442 0.78080 0.89735
1.90680 1.56125 1.59809 1.35559 1.48483 1.14589 1.51758 1.20359
1.21928 0.93874 0.94687 0.90844 1.22731 0.96097 1.02575 0.94679
1.22782 0.90060 0.96027 0.95311 0.92670 1.61646 1.07108 1.42457
1.11896 1.22556 0.99620 0.90217 1.00090 1.21943 0.98454 1.00565
0.87904 1.19672 0.89338 0.84915 0.83170 1.90485 1.42483 1.57697
1.55465 1.41851 1.13314 1.58258 1.06559 1.19644 0.89766 1.40679
0.92842 0.87951 1.25249 0.99147 0.97618 0.95820 1.69597 1.31234
1.48945 1.04533 0.85929 0.81574 0.79398 0.77391 1.19928 1.20986
1.19864 1.22428 0.89504 0.99558 0.90366 0.91530 0.91764 0.92489
0.88969 0.91108 0.92023 0.91817 0.91254 0.91578 0.90072 0.89046
0.88276 0.92048 0.96481 0.89455 0.93313 0.77523 0.91805 0.89526
0.90443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.23 8.72 37.16 0.32 -0.90 16
2 C -0.11 -1.11 2.69 -91.77 -0.25 -1.36 16
3 C -0.14 -1.29 9.17 37.16 0.34 -0.95 16
4 C 0.53 6.80 6.96 -10.99 -0.08 6.73 16
5 O -0.54 -8.71 16.42 5.55 0.09 -8.61 16
6 N -0.62 -7.22 3.33 -170.48 -0.57 -7.79 16
7 C 0.11 1.17 6.88 -3.03 -0.02 1.15 16
8 C -0.12 -1.24 5.29 -24.87 -0.13 -1.37 16
9 C 0.07 0.79 2.71 -65.57 -0.18 0.61 16
10 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
11 N -0.51 -7.58 4.40 -233.75 -1.03 -8.61 16
12 C 0.02 0.34 9.08 60.07 0.55 0.88 16
13 C 0.04 0.70 5.33 -4.98 -0.03 0.67 16
14 C 0.44 9.89 7.54 -10.99 -0.08 9.81 16
15 O -0.58 -14.79 13.88 5.55 0.08 -14.71 16
16 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16
17 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16
18 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16
19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16
20 N -0.90 -23.88 13.05 55.50 0.72 -23.15 16
21 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16
22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16
23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
25 C 0.10 1.16 4.96 -2.53 -0.01 1.15 16
26 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16
27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.09 0.80 6.82 -51.93 -0.35 0.44 16
30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16
33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
35 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16
36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
37 H 0.10 1.82 6.00 -51.93 -0.31 1.51 16
38 H 0.06 0.76 6.72 -51.93 -0.35 0.41 16
39 H 0.02 0.23 8.06 -51.93 -0.42 -0.19 16
40 H 0.09 1.26 6.73 -51.93 -0.35 0.91 16
41 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16
42 H 0.39 9.07 7.90 -40.82 -0.32 8.75 16
43 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16
44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16
45 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16
LS Contribution 360.86 15.07 5.44 5.44
Total: -1.00 -31.58 360.86 -7.55 -39.13
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: -7.40 Total: 7.79 kcal
Atomic # 6 Polarization: 8.50 SS G_CDS: 0.19 Total: 8.69 kcal
Atomic # 7 Polarization: -52.35 SS G_CDS: -0.93 Total: -53.28 kcal
Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.33 kcal
Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -31.58 -7.55 -39.13 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188907369.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.854 kcal
(2) G-P(sol) polarization free energy of solvation -31.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.434 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds