Wall clock time and date at job start Tue Mar 31 2020 03:47:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47052 * 2 1
4 4 C 1.50697 * 109.46816 * 119.99768 * 2 1 3
5 5 O 1.21285 * 120.00141 * 335.61892 * 4 2 1
6 6 N 1.34776 * 119.99884 * 155.62187 * 4 2 1
7 7 C 1.47029 * 125.64743 * 185.83640 * 6 4 2
8 8 C 1.54378 * 107.28414 * 178.94251 * 7 6 4
9 9 C 1.55154 * 102.92450 * 337.86526 * 8 7 6
10 10 H 1.09002 * 111.00431 * 277.36216 * 9 8 7
11 11 N 1.46897 * 111.00773 * 153.54580 * 9 8 7
12 12 C 1.46902 * 110.99958 * 60.96145 * 11 9 8
13 13 C 1.46892 * 111.00160 * 184.91591 * 11 9 8
14 14 C 1.50704 * 109.47030 * 169.99907 * 13 11 9
15 15 O 1.21293 * 120.00274 * 0.02562 * 14 13 11
16 16 N 1.34773 * 120.00154 * 180.02562 * 14 13 11
17 17 C 1.37095 * 120.00430 * 180.02562 * 16 14 13
18 18 H 1.07999 * 119.99570 * 359.97438 * 17 16 14
19 19 C 1.38949 * 120.00326 * 180.02562 * 17 16 14
20 20 N 1.31412 * 120.00228 * 359.97438 * 19 17 16
21 21 Si 1.86799 * 120.00012 * 179.97438 * 19 17 16
22 22 H 1.48508 * 109.47010 * 60.00104 * 21 19 17
23 23 H 1.48501 * 109.47248 * 179.97438 * 21 19 17
24 24 H 1.48502 * 109.47385 * 299.99950 * 21 19 17
25 25 C 1.47427 * 125.65065 * 5.88466 * 6 4 2
26 26 H 1.08999 * 109.47164 * 300.00337 * 1 2 3
27 27 H 1.09000 * 109.46950 * 60.00486 * 1 2 3
28 28 H 1.09002 * 109.47184 * 180.02562 * 1 2 3
29 29 H 1.08999 * 109.47164 * 239.99663 * 2 1 3
30 30 H 1.09006 * 109.47170 * 303.11752 * 3 2 1
31 31 H 1.09002 * 109.47452 * 63.11042 * 3 2 1
32 32 H 1.09005 * 109.47508 * 183.11181 * 3 2 1
33 33 H 1.08990 * 109.88176 * 298.39279 * 7 6 4
34 34 H 1.08998 * 109.87881 * 59.40702 * 7 6 4
35 35 H 1.08997 * 110.75216 * 219.49086 * 8 7 6
36 36 H 1.08998 * 110.70063 * 96.20960 * 8 7 6
37 37 H 1.09000 * 109.47131 * 189.76408 * 12 11 9
38 38 H 1.09006 * 109.46990 * 309.76016 * 12 11 9
39 39 H 1.09003 * 109.46848 * 69.75793 * 12 11 9
40 40 H 1.09005 * 109.47160 * 50.00418 * 13 11 9
41 41 H 1.08994 * 109.47653 * 290.00223 * 13 11 9
42 42 H 0.97007 * 119.99817 * 359.97438 * 16 14 13
43 43 H 0.96995 * 120.00136 * 180.02562 * 20 19 17
44 44 H 1.08994 * 110.36726 * 85.24906 * 25 6 4
45 45 H 1.09004 * 110.45542 * 322.97396 * 25 6 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0323 -0.7104 1.2305
5 8 1.3324 -0.7801 2.2186
6 7 3.2592 -1.2681 1.2330
7 6 3.8247 -2.0899 2.3131
8 6 5.2355 -2.5283 1.8652
9 6 5.1655 -2.3980 0.3207
10 1 4.7062 -3.2801 -0.1254
11 7 6.4980 -2.1568 -0.2484
12 6 7.4078 -3.2706 0.0510
13 6 6.4171 -1.9176 -1.6955
14 6 7.7526 -1.4354 -2.2004
15 8 8.6807 -1.3043 -1.4306
16 7 7.9157 -1.1497 -3.5074
17 6 9.1308 -0.7115 -3.9668
18 1 9.9571 -0.5948 -3.2813
19 6 9.2988 -0.4165 -5.3142
20 7 8.2932 -0.5580 -6.1483
21 14 10.9542 0.1813 -5.9401
22 1 11.9882 -0.8491 -5.6667
23 1 10.8723 0.4237 -7.4029
24 1 11.3185 1.4438 -5.2483
25 6 4.2570 -1.1544 0.1536
26 1 -0.3633 0.5139 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 1.8934 -0.5139 -0.8899
30 1 1.6317 1.9722 -0.8608
31 1 1.7229 1.9400 0.9165
32 1 3.1286 1.4431 -0.0558
33 1 3.8919 -1.5029 3.2290
34 1 3.1978 -2.9659 2.4794
35 1 5.4299 -3.5604 2.1568
36 1 5.9943 -1.8614 2.2745
37 1 8.4248 -2.9939 -0.2271
38 1 7.3707 -3.4935 1.1174
39 1 7.1030 -4.1509 -0.5150
40 1 5.6580 -1.1617 -1.8969
41 1 6.1501 -2.8447 -2.2026
42 1 7.1736 -1.2549 -4.1231
43 1 8.4106 -0.3524 -7.0889
44 1 4.8394 -0.2406 0.2701
45 1 3.7679 -1.1701 -0.8204
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001188907369.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:47:15
Heat of formation + Delta-G solvation = -89.353816 kcal
Electronic energy + Delta-G solvation = -24673.012906 eV
Core-core repulsion = 21110.507494 eV
Total energy + Delta-G solvation = -3562.505412 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.40746 -40.32520 -39.05494 -36.68387 -35.72528 -35.45413 -33.23810 -32.01700
-29.93177 -29.33282 -28.05495 -26.70783 -25.65324 -24.76120 -22.72249 -21.30037
-20.88947 -19.96841 -19.77102 -18.50699 -17.77033 -17.52586 -16.66551 -16.47409
-16.29074 -16.00702 -15.59013 -15.38126 -15.11733 -15.01917 -14.57907 -14.24290
-14.17632 -13.95415 -13.68395 -13.50434 -13.33835 -13.11434 -13.03270 -12.85449
-12.75654 -12.54696 -12.41171 -12.34588 -12.12505 -12.10035 -12.07714 -11.85643
-11.73215 -11.41622 -10.83111 -10.24026 -9.95567 -9.74104 -9.21502 -8.42631
-5.90453 1.42015 1.44319 1.54132 1.54287 1.87052 2.11232 2.31272
2.75337 3.24640 3.30036 3.45906 3.51589 3.76327 3.95992 4.00638
4.10095 4.19427 4.22285 4.34598 4.38033 4.44222 4.55948 4.62448
4.65093 4.72261 4.74056 4.77302 4.82168 4.89321 4.89833 4.92028
5.03212 5.15901 5.21088 5.26287 5.28641 5.34114 5.45324 5.88218
6.07420 6.21351 6.42501 6.65827 7.07217 7.18129 7.62330 8.18582
8.74408
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.018481 B = 0.003342 C = 0.002938
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1514.680187 B = 8375.329976 C = 9527.906094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.110 4.110
3 C -0.140 4.140
4 C 0.528 3.472
5 O -0.584 6.584
6 N -0.617 5.617
7 C 0.107 3.893
8 C -0.113 4.113
9 C 0.071 3.929
10 H 0.071 0.929
11 N -0.523 5.523
12 C 0.027 3.973
13 C 0.055 3.945
14 C 0.442 3.558
15 O -0.614 6.614
16 N -0.575 5.575
17 C -0.331 4.331
18 H 0.078 0.922
19 C -0.011 4.011
20 N -0.920 5.920
21 Si 0.988 3.012
22 H -0.273 1.273
23 H -0.272 1.272
24 H -0.273 1.273
25 C 0.106 3.894
26 H 0.050 0.950
27 H 0.086 0.914
28 H 0.052 0.948
29 H 0.111 0.889
30 H 0.089 0.911
31 H 0.050 0.950
32 H 0.059 0.941
33 H 0.063 0.937
34 H 0.072 0.928
35 H 0.102 0.898
36 H 0.081 0.919
37 H 0.057 0.943
38 H 0.085 0.915
39 H 0.028 0.972
40 H 0.112 0.888
41 H 0.070 0.930
42 H 0.396 0.604
43 H 0.277 0.723
44 H 0.076 0.924
45 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.343 -2.965 8.974 16.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.132 4.132
3 C -0.198 4.198
4 C 0.318 3.682
5 O -0.464 6.464
6 N -0.350 5.350
7 C -0.015 4.015
8 C -0.151 4.151
9 C -0.038 4.038
10 H 0.089 0.911
11 N -0.247 5.247
12 C -0.120 4.120
13 C -0.076 4.076
14 C 0.230 3.770
15 O -0.500 6.500
16 N -0.212 5.212
17 C -0.460 4.460
18 H 0.096 0.904
19 C -0.211 4.211
20 N -0.561 5.561
21 Si 0.812 3.188
22 H -0.198 1.198
23 H -0.197 1.197
24 H -0.198 1.198
25 C -0.017 4.017
26 H 0.069 0.931
27 H 0.105 0.895
28 H 0.071 0.929
29 H 0.129 0.871
30 H 0.108 0.892
31 H 0.069 0.931
32 H 0.078 0.922
33 H 0.081 0.919
34 H 0.090 0.910
35 H 0.120 0.880
36 H 0.100 0.900
37 H 0.076 0.924
38 H 0.104 0.896
39 H 0.047 0.953
40 H 0.130 0.870
41 H 0.088 0.912
42 H 0.230 0.770
43 H 0.086 0.914
44 H 0.094 0.906
45 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -12.990 -2.429 10.026 16.588
hybrid contribution 0.338 -0.466 -1.004 1.157
sum -12.652 -2.895 9.022 15.807
Atomic orbital electron populations
1.21646 0.92062 1.02329 1.02887 1.21372 0.98490 0.97897 0.95393
1.21744 1.01539 0.93187 1.03311 1.20995 0.79307 0.77723 0.90133
1.90659 1.57224 1.61382 1.37179 1.48558 1.14440 1.51333 1.20677
1.21988 0.94275 0.94707 0.90558 1.22684 0.95284 1.03594 0.93532
1.22808 0.88259 0.96747 0.95979 0.91077 1.61548 1.09093 1.43119
1.10987 1.22431 0.97408 0.90399 1.01795 1.21815 0.94870 1.01958
0.88968 1.20758 0.91161 0.82940 0.82154 1.90472 1.44594 1.58665
1.56256 1.41913 1.12703 1.59080 1.07523 1.19594 0.90558 1.42656
0.93241 0.90372 1.25950 1.02323 0.97289 0.95512 1.69653 1.32520
1.49108 1.04820 0.85057 0.77724 0.78702 0.77282 1.19849 1.19669
1.19815 1.22436 0.89314 0.98879 0.91042 0.93058 0.89506 0.92897
0.87125 0.89213 0.93076 0.92165 0.91883 0.90996 0.88000 0.90017
0.92433 0.89625 0.95306 0.86975 0.91247 0.77016 0.91398 0.90608
0.88519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.20 8.72 71.98 0.63 -1.58 16
2 C -0.11 -1.96 2.69 -11.54 -0.03 -1.99 16
3 C -0.14 -2.29 9.17 71.98 0.66 -1.63 16
4 C 0.53 12.83 6.96 87.66 0.61 13.44 16
5 O -0.58 -18.56 16.42 -3.04 -0.05 -18.61 16
6 N -0.62 -13.34 3.33 -811.68 -2.70 -16.04 16
7 C 0.11 2.13 6.88 86.75 0.60 2.72 16
8 C -0.11 -2.01 5.29 31.80 0.17 -1.85 16
9 C 0.07 1.44 2.71 46.31 0.13 1.57 16
10 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
11 N -0.52 -14.61 4.40 -893.44 -3.93 -18.54 16
12 C 0.03 0.77 9.08 127.69 1.16 1.93 16
13 C 0.05 1.68 5.33 85.56 0.46 2.14 16
14 C 0.44 19.69 7.54 87.66 0.66 20.35 16
15 O -0.61 -32.10 13.88 -3.07 -0.04 -32.14 16
16 N -0.57 -28.02 5.29 -306.99 -1.62 -29.64 16
17 C -0.33 -18.17 9.68 84.04 0.81 -17.35 16
18 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16
19 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16
20 N -0.92 -48.18 13.05 21.66 0.28 -47.89 16
21 Si 0.99 41.93 29.55 68.60 2.03 43.96 16
22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16
23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16
24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
25 C 0.11 2.08 4.96 86.86 0.43 2.51 16
26 H 0.05 1.01 7.87 -2.39 -0.02 0.99 16
27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16
28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
29 H 0.11 1.55 6.82 -2.39 -0.02 1.54 16
30 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16
31 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16
32 H 0.06 1.02 7.87 -2.38 -0.02 1.00 16
33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.10 1.42 7.88 -2.39 -0.02 1.40 16
36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
37 H 0.06 2.13 6.00 -2.39 -0.01 2.11 16
38 H 0.09 1.93 6.72 -2.38 -0.02 1.91 16
39 H 0.03 0.73 8.06 -2.39 -0.02 0.71 16
40 H 0.11 2.89 6.73 -2.38 -0.02 2.88 16
41 H 0.07 1.88 8.06 -2.39 -0.02 1.87 16
42 H 0.40 18.24 7.90 -92.70 -0.73 17.51 16
43 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16
44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
45 H 0.10 1.53 6.44 -2.39 -0.02 1.52 16
Total: -1.00 -69.39 360.86 0.96 -68.43
By element:
Atomic # 1 Polarization: 30.06 SS G_CDS: 0.25 Total: 30.31 kcal
Atomic # 6 Polarization: 13.42 SS G_CDS: 6.74 Total: 20.17 kcal
Atomic # 7 Polarization: -104.14 SS G_CDS: -7.97 Total: -112.11 kcal
Atomic # 8 Polarization: -50.66 SS G_CDS: -0.09 Total: -50.76 kcal
Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal
Total: -69.39 0.96 -68.43 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001188907369.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.926 kcal
(2) G-P(sol) polarization free energy of solvation -69.387 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.313 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.354 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds