Wall clock time and date at job start Tue Mar 31 2020 03:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48507 * 109.46889 * 91.90454 * 3 2 1 5 5 H 1.48501 * 109.47416 * 331.90674 * 3 2 1 6 6 H 1.48497 * 109.47206 * 211.90107 * 3 2 1 7 7 C 1.38808 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99797 * 18.77573 * 7 2 1 9 9 N 1.36936 * 120.00095 * 198.77459 * 7 2 1 10 10 C 1.43464 * 118.94018 * 209.18620 * 9 7 2 11 11 C 1.53791 * 107.96169 * 273.60980 * 10 9 7 12 12 C 1.47139 * 111.84067 * 281.66716 * 11 10 9 13 13 N 1.48213 * 110.34188 * 58.29712 * 12 11 10 14 14 C 1.34774 * 119.97016 * 102.46927 * 13 12 11 15 15 O 1.21282 * 120.00422 * 354.83681 * 14 13 12 16 16 C 1.50701 * 120.00060 * 174.83978 * 14 13 12 17 17 C 1.53004 * 109.47134 * 174.22914 * 16 14 13 18 18 C 1.53003 * 109.46794 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.46872 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.47054 * 179.97438 * 19 18 17 21 21 N 1.34783 * 120.00120 * 180.02562 * 20 19 18 22 22 O 1.21282 * 120.00390 * 0.02562 * 20 19 18 23 23 C 1.43626 * 120.06090 * 282.48952 * 13 12 11 24 24 C 1.48853 * 118.93667 * 28.91455 * 9 7 2 25 25 H 0.97005 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.76305 * 33.22697 * 10 9 7 27 27 H 1.09000 * 109.76206 * 153.93876 * 10 9 7 28 28 H 1.09003 * 109.00487 * 42.27369 * 11 10 9 29 29 H 1.08997 * 109.00651 * 161.13588 * 11 10 9 30 30 H 1.08996 * 109.32520 * 178.56277 * 12 11 10 31 31 H 1.09002 * 109.32668 * 298.20464 * 12 11 10 32 32 H 1.09003 * 109.47010 * 294.22400 * 16 14 13 33 33 H 1.08996 * 109.47463 * 54.22551 * 16 14 13 34 34 H 1.09004 * 109.46809 * 299.99090 * 17 16 14 35 35 H 1.08996 * 109.47242 * 59.99501 * 17 16 14 36 36 H 1.08993 * 109.47320 * 299.99391 * 18 17 16 37 37 H 1.09004 * 109.46922 * 60.00055 * 18 17 16 38 38 H 1.09002 * 109.47779 * 300.00231 * 19 18 17 39 39 H 1.09001 * 109.47042 * 60.00172 * 19 18 17 40 40 H 0.97004 * 119.99568 * 0.02562 * 21 20 19 41 41 H 0.96998 * 120.00183 * 180.02562 * 21 20 19 42 42 H 1.09001 * 108.87118 * 211.44389 * 23 13 12 43 43 H 1.08997 * 108.87221 * 329.98723 * 23 13 12 44 44 H 1.08992 * 109.48348 * 260.62503 * 24 9 7 45 45 H 1.08997 * 109.48632 * 20.66575 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5380 2.0231 1.3994 5 1 1.4281 2.6640 -0.6593 6 1 3.5271 1.4522 -0.7399 7 6 2.0103 -1.2021 -0.0005 8 1 1.5134 -2.1124 -0.3020 9 7 3.3250 -1.2339 0.3811 10 6 4.1874 -2.2327 -0.1819 11 6 4.0631 -3.5040 0.6745 12 6 4.8384 -3.4023 1.9210 13 7 4.3866 -2.2351 2.7149 14 6 3.5855 -2.4170 3.7834 15 8 3.1585 -3.5228 4.0400 16 6 3.2202 -1.2463 4.6593 17 6 2.1961 -1.6918 5.7051 18 6 1.8258 -0.5034 6.5947 19 6 0.8012 -0.9487 7.6401 20 6 0.4369 0.2216 8.5167 21 7 -0.4550 0.0641 9.5150 22 8 0.9462 1.3054 8.3241 23 6 4.8015 -0.9103 2.3465 24 6 3.8147 -0.2272 1.3622 25 1 -0.4850 0.8401 0.0004 26 1 3.8832 -2.4472 -1.2064 27 1 5.2182 -1.8786 -0.1701 28 1 3.0136 -3.6645 0.9214 29 1 4.4268 -4.3559 0.1001 30 1 4.7012 -4.3115 2.5063 31 1 5.8949 -3.2843 1.6801 32 1 4.1139 -0.8752 5.1610 33 1 2.7921 -0.4534 4.0461 34 1 1.3024 -2.0629 5.2033 35 1 2.6243 -2.4848 6.3182 36 1 2.7195 -0.1327 7.0964 37 1 1.3977 0.2898 5.9817 38 1 -0.0926 -1.3193 7.1381 39 1 1.2289 -1.7421 8.2531 40 1 -0.8620 -0.8028 9.6693 41 1 -0.6897 0.8175 10.0790 42 1 4.8791 -0.3018 3.2475 43 1 5.7820 -0.9666 1.8738 44 1 4.3235 0.5784 0.8330 45 1 2.9700 0.1795 1.9182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197730896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:05 Heat of formation + Delta-G solvation = -61.637827 kcal Electronic energy + Delta-G solvation = -25175.320415 eV Core-core repulsion = 21614.016859 eV Total energy + Delta-G solvation = -3561.303556 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.89601 -39.56092 -37.24659 -35.07402 -34.30178 -33.83066 -32.89243 -31.40461 -30.47280 -27.79344 -26.31137 -25.18688 -23.40761 -22.45142 -21.07518 -20.40053 -19.91635 -18.48561 -17.46395 -17.11540 -16.72350 -16.22140 -16.09486 -15.93545 -15.38414 -14.89760 -14.42352 -14.04635 -14.01980 -13.75090 -13.35802 -13.14959 -12.90748 -12.50105 -12.35371 -12.32700 -11.98774 -11.61572 -11.47276 -11.43827 -11.24139 -10.99995 -10.94857 -10.45959 -10.38342 -10.36066 -10.08701 -10.06177 -9.95844 -9.88720 -9.53220 -9.28975 -8.60885 -8.13418 -6.89867 -5.94008 -3.33163 2.51356 3.07610 3.29239 3.34149 3.45694 3.48308 3.52344 4.51800 4.68851 4.77493 4.89428 4.97290 5.00397 5.27600 5.34210 5.37688 5.42255 5.50172 5.56561 5.59211 5.72522 5.80025 5.84700 5.85922 5.91102 5.96167 6.08905 6.11419 6.31073 6.35590 6.39528 6.49152 6.50687 6.55190 6.57968 6.72476 6.93884 7.11870 7.15798 7.88304 8.03480 8.10199 8.38684 8.65164 8.99595 9.74111 10.07325 11.22242 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.004602 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.794667 B = 6082.485404 C = 7356.758677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.263 4.263 8 H 0.082 0.918 9 N -0.600 5.600 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.130 3.870 13 N -0.590 5.590 14 C 0.522 3.478 15 O -0.552 6.552 16 C -0.141 4.141 17 C -0.101 4.101 18 C -0.106 4.106 19 C -0.142 4.142 20 C 0.515 3.485 21 N -0.861 5.861 22 O -0.543 6.543 23 C 0.094 3.906 24 C 0.102 3.898 25 H 0.262 0.738 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.401 0.599 41 H 0.398 0.602 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -3.093 14.554 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.715 3.285 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.200 1.200 7 C -0.391 4.391 8 H 0.100 0.900 9 N -0.322 5.322 10 C 0.035 3.965 11 C -0.210 4.210 12 C 0.009 3.991 13 N -0.321 5.321 14 C 0.311 3.689 15 O -0.431 6.431 16 C -0.181 4.181 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.182 4.182 20 C 0.301 3.699 21 N -0.425 5.425 22 O -0.419 6.419 23 C -0.032 4.032 24 C -0.024 4.024 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.229 0.771 41 H 0.229 0.771 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.054 0.946 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.678 -2.967 14.381 16.131 hybrid contribution -0.049 0.995 0.195 1.015 sum 6.629 -1.972 14.576 16.133 Atomic orbital electron populations 1.69841 1.05767 1.26464 1.52983 1.25328 0.95177 0.97486 0.99289 0.87000 0.79422 0.84660 0.77389 1.21405 1.23249 1.19991 1.18897 0.84790 0.94418 1.41033 0.90007 1.43900 1.08091 1.34385 1.45859 1.20350 0.92848 0.87990 0.95273 1.21812 1.02233 1.00183 0.96739 1.20556 0.96995 0.88781 0.92813 1.47368 1.49718 1.07110 1.27944 1.20556 0.77176 0.90257 0.80873 1.90621 1.52776 1.26697 1.72956 1.21691 1.00743 0.97819 0.97803 1.21319 0.99207 0.97169 0.96248 1.21379 0.98374 0.98363 0.96289 1.21697 1.02073 0.96477 0.97931 1.20902 0.78032 0.90527 0.80472 1.43950 1.46839 1.16043 1.35668 1.90754 1.52939 1.27922 1.70334 1.21849 0.98389 0.83837 0.99120 1.22696 0.96985 0.91919 0.90795 0.92820 0.92725 0.94672 0.90820 0.92450 0.90432 0.92202 0.89339 0.88614 0.90930 0.91386 0.91326 0.90856 0.88449 0.88775 0.77081 0.77145 0.90937 0.91415 0.94634 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.83 13.97 55.49 0.78 -27.05 16 2 C 0.03 0.75 5.20 -17.43 -0.09 0.66 16 3 Si 0.88 22.02 23.99 -169.99 -4.08 17.94 16 4 H -0.29 -6.77 6.57 56.52 0.37 -6.39 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.66 6.66 56.52 0.38 -6.28 16 7 C -0.26 -7.27 9.67 -15.06 -0.15 -7.42 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -13.75 2.28 -171.79 -0.39 -14.14 16 10 C 0.16 3.13 5.63 -5.24 -0.03 3.10 16 11 C -0.17 -2.98 5.64 -29.13 -0.16 -3.14 16 12 C 0.13 2.08 5.67 -5.91 -0.03 2.04 16 13 N -0.59 -10.10 2.46 -176.43 -0.43 -10.53 16 14 C 0.52 9.48 7.65 -10.99 -0.08 9.40 16 15 O -0.55 -11.55 15.46 5.56 0.09 -11.46 16 16 C -0.14 -2.10 4.12 -27.88 -0.11 -2.22 16 17 C -0.10 -1.39 4.52 -26.73 -0.12 -1.51 16 18 C -0.11 -1.30 4.50 -26.73 -0.12 -1.43 16 19 C -0.14 -1.38 5.70 -27.88 -0.16 -1.53 16 20 C 0.52 5.74 8.10 -10.98 -0.09 5.66 16 21 N -0.86 -5.98 8.87 31.22 0.28 -5.70 16 22 O -0.54 -8.61 16.82 5.56 0.09 -8.52 16 23 C 0.09 1.49 4.98 -4.39 -0.02 1.47 16 24 C 0.10 2.08 4.49 -1.56 -0.01 2.07 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.05 1.08 8.02 -51.93 -0.42 0.66 16 27 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 28 H 0.07 1.60 7.91 -51.93 -0.41 1.19 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.28 7.19 -51.93 -0.37 0.90 16 31 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.09 1.08 7.82 -51.93 -0.41 0.67 16 33 H 0.10 1.55 7.13 -51.93 -0.37 1.18 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.07 1.04 8.10 -51.93 -0.42 0.61 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.40 1.53 8.83 -40.82 -0.36 1.17 16 41 H 0.40 2.45 8.93 -40.82 -0.36 2.09 16 42 H 0.07 0.97 6.49 -51.93 -0.34 0.63 16 43 H 0.07 0.93 7.72 -51.93 -0.40 0.53 16 44 H 0.04 0.73 5.80 -51.93 -0.30 0.43 16 45 H 0.07 1.62 5.04 -51.93 -0.26 1.36 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -36.05 349.77 -6.96 -43.01 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.38 Total: 4.04 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.18 Total: 7.14 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.23 Total: -57.43 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.18 Total: -19.98 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.08 Total: 17.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.05 -6.96 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197730896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.630 kcal (2) G-P(sol) polarization free energy of solvation -36.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds