Wall clock time and date at job start Tue Mar 31 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99837 * 2 1 4 4 H 1.48507 * 109.46889 * 91.90454 * 3 2 1 5 5 H 1.48501 * 109.47416 * 331.90674 * 3 2 1 6 6 H 1.48497 * 109.47206 * 211.90107 * 3 2 1 7 7 C 1.38808 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99797 * 18.77573 * 7 2 1 9 9 N 1.36936 * 120.00095 * 198.77459 * 7 2 1 10 10 C 1.43464 * 118.94018 * 209.18620 * 9 7 2 11 11 C 1.53791 * 107.96169 * 273.60980 * 10 9 7 12 12 C 1.47139 * 111.84067 * 281.66716 * 11 10 9 13 13 N 1.48213 * 110.34188 * 58.29712 * 12 11 10 14 14 C 1.34774 * 119.97016 * 102.46927 * 13 12 11 15 15 O 1.21282 * 120.00422 * 354.83681 * 14 13 12 16 16 C 1.50701 * 120.00060 * 174.83978 * 14 13 12 17 17 C 1.53004 * 109.47134 * 174.22914 * 16 14 13 18 18 C 1.53003 * 109.46794 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.46872 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.47054 * 179.97438 * 19 18 17 21 21 N 1.34783 * 120.00120 * 180.02562 * 20 19 18 22 22 O 1.21282 * 120.00390 * 0.02562 * 20 19 18 23 23 C 1.43626 * 120.06090 * 282.48952 * 13 12 11 24 24 C 1.48853 * 118.93667 * 28.91455 * 9 7 2 25 25 H 0.97005 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.76305 * 33.22697 * 10 9 7 27 27 H 1.09000 * 109.76206 * 153.93876 * 10 9 7 28 28 H 1.09003 * 109.00487 * 42.27369 * 11 10 9 29 29 H 1.08997 * 109.00651 * 161.13588 * 11 10 9 30 30 H 1.08996 * 109.32520 * 178.56277 * 12 11 10 31 31 H 1.09002 * 109.32668 * 298.20464 * 12 11 10 32 32 H 1.09003 * 109.47010 * 294.22400 * 16 14 13 33 33 H 1.08996 * 109.47463 * 54.22551 * 16 14 13 34 34 H 1.09004 * 109.46809 * 299.99090 * 17 16 14 35 35 H 1.08996 * 109.47242 * 59.99501 * 17 16 14 36 36 H 1.08993 * 109.47320 * 299.99391 * 18 17 16 37 37 H 1.09004 * 109.46922 * 60.00055 * 18 17 16 38 38 H 1.09002 * 109.47779 * 300.00231 * 19 18 17 39 39 H 1.09001 * 109.47042 * 60.00172 * 19 18 17 40 40 H 0.97004 * 119.99568 * 0.02562 * 21 20 19 41 41 H 0.96998 * 120.00183 * 180.02562 * 21 20 19 42 42 H 1.09001 * 108.87118 * 211.44389 * 23 13 12 43 43 H 1.08997 * 108.87221 * 329.98723 * 23 13 12 44 44 H 1.08992 * 109.48348 * 260.62503 * 24 9 7 45 45 H 1.08997 * 109.48632 * 20.66575 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5380 2.0231 1.3994 5 1 1.4281 2.6640 -0.6593 6 1 3.5271 1.4522 -0.7399 7 6 2.0103 -1.2021 -0.0005 8 1 1.5134 -2.1124 -0.3020 9 7 3.3250 -1.2339 0.3811 10 6 4.1874 -2.2327 -0.1819 11 6 4.0631 -3.5040 0.6745 12 6 4.8384 -3.4023 1.9210 13 7 4.3866 -2.2351 2.7149 14 6 3.5855 -2.4170 3.7834 15 8 3.1585 -3.5228 4.0400 16 6 3.2202 -1.2463 4.6593 17 6 2.1961 -1.6918 5.7051 18 6 1.8258 -0.5034 6.5947 19 6 0.8012 -0.9487 7.6401 20 6 0.4369 0.2216 8.5167 21 7 -0.4550 0.0641 9.5150 22 8 0.9462 1.3054 8.3241 23 6 4.8015 -0.9103 2.3465 24 6 3.8147 -0.2272 1.3622 25 1 -0.4850 0.8401 0.0004 26 1 3.8832 -2.4472 -1.2064 27 1 5.2182 -1.8786 -0.1701 28 1 3.0136 -3.6645 0.9214 29 1 4.4268 -4.3559 0.1001 30 1 4.7012 -4.3115 2.5063 31 1 5.8949 -3.2843 1.6801 32 1 4.1139 -0.8752 5.1610 33 1 2.7921 -0.4534 4.0461 34 1 1.3024 -2.0629 5.2033 35 1 2.6243 -2.4848 6.3182 36 1 2.7195 -0.1327 7.0964 37 1 1.3977 0.2898 5.9817 38 1 -0.0926 -1.3193 7.1381 39 1 1.2289 -1.7421 8.2531 40 1 -0.8620 -0.8028 9.6693 41 1 -0.6897 0.8175 10.0790 42 1 4.8791 -0.3018 3.2475 43 1 5.7820 -0.9666 1.8738 44 1 4.3235 0.5784 0.8330 45 1 2.9700 0.1795 1.9182 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197730896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:04 Heat of formation + Delta-G solvation = -89.885666 kcal Electronic energy + Delta-G solvation = -25176.545333 eV Core-core repulsion = 21614.016859 eV Total energy + Delta-G solvation = -3562.528475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.25781 -40.48365 -38.80107 -36.22881 -35.91062 -34.63634 -34.36284 -33.38775 -31.54336 -29.38391 -27.78585 -26.42280 -25.17573 -23.75231 -22.25889 -21.56461 -21.25864 -19.85143 -18.86023 -18.17080 -17.90507 -17.53040 -17.43547 -17.14049 -16.87483 -16.34635 -15.92785 -15.49244 -15.29195 -14.96334 -14.84637 -14.62413 -14.29301 -14.04274 -13.77465 -13.60685 -13.38087 -13.20059 -12.91498 -12.65356 -12.53804 -12.27542 -12.25670 -12.06961 -11.88694 -11.77185 -11.57850 -11.52650 -11.49206 -11.02948 -10.76188 -10.64150 -10.63584 -9.54638 -8.80909 -8.15039 -5.50203 1.31096 1.42314 1.51485 1.66408 1.68794 2.20001 2.43084 2.66751 3.06944 3.41041 3.65182 3.82777 4.00452 4.01072 4.07750 4.12918 4.18828 4.32163 4.40949 4.44618 4.50796 4.59760 4.63571 4.70253 4.78270 4.79648 4.86204 4.87723 4.93134 4.97552 5.05705 5.05820 5.22623 5.32019 5.43959 5.49412 5.77578 5.91114 5.92077 6.15414 6.48188 6.54949 7.00938 7.27724 7.37715 7.69995 8.01761 9.05594 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.004602 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.794667 B = 6082.485404 C = 7356.758677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.036 4.036 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.318 1.318 6 H -0.256 1.256 7 C -0.250 4.250 8 H 0.033 0.967 9 N -0.611 5.611 10 C 0.157 3.843 11 C -0.156 4.156 12 C 0.127 3.873 13 N -0.593 5.593 14 C 0.511 3.489 15 O -0.589 6.589 16 C -0.139 4.139 17 C -0.093 4.093 18 C -0.099 4.099 19 C -0.139 4.139 20 C 0.512 3.488 21 N -0.840 5.840 22 O -0.597 6.597 23 C 0.098 3.902 24 C 0.093 3.907 25 H 0.259 0.741 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.017 0.983 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.419 0.581 41 H 0.405 0.595 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.049 0.951 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.913 -2.613 16.080 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.230 4.230 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.248 1.248 6 H -0.180 1.180 7 C -0.380 4.380 8 H 0.050 0.950 9 N -0.335 5.335 10 C 0.031 3.969 11 C -0.196 4.196 12 C 0.006 3.994 13 N -0.323 5.323 14 C 0.301 3.699 15 O -0.470 6.470 16 C -0.178 4.178 17 C -0.131 4.131 18 C -0.137 4.137 19 C -0.179 4.179 20 C 0.298 3.702 21 N -0.404 5.404 22 O -0.478 6.478 23 C -0.027 4.027 24 C -0.032 4.032 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.250 0.750 41 H 0.236 0.764 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.066 0.934 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.035 -2.530 15.938 19.004 hybrid contribution -1.139 0.681 -0.293 1.359 sum 8.896 -1.849 15.645 18.092 Atomic orbital electron populations 1.70009 1.07846 1.27117 1.55924 1.26016 0.95778 1.01312 0.99872 0.85881 0.78209 0.79213 0.78488 1.19045 1.24762 1.18011 1.18731 0.87032 0.92615 1.39645 0.94967 1.44018 1.06673 1.35690 1.47093 1.20550 0.94129 0.87616 0.94605 1.21652 0.99262 1.00665 0.98059 1.20681 0.98957 0.88433 0.91323 1.47557 1.49176 1.08070 1.27532 1.21183 0.76723 0.90537 0.81491 1.90598 1.54072 1.28321 1.74035 1.21750 1.02415 0.96092 0.97556 1.21233 0.97856 0.97926 0.96120 1.21261 0.99261 0.96870 0.96336 1.21696 1.01934 0.96668 0.97566 1.21117 0.78096 0.89952 0.81015 1.43770 1.45166 1.17283 1.34135 1.90732 1.55267 1.29817 1.72028 1.21905 0.98159 0.83067 0.99566 1.22817 0.97269 0.92037 0.91057 0.93196 0.94120 0.90504 0.96419 0.89565 0.91244 0.87674 0.85717 0.90086 0.93691 0.90356 0.90738 0.93355 0.87596 0.85844 0.74999 0.76400 0.87798 0.87622 0.93350 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.96 13.97 21.65 0.30 -61.66 16 2 C -0.04 -2.09 5.20 84.86 0.44 -1.65 16 3 Si 0.95 45.80 23.99 68.60 1.65 47.44 16 4 H -0.26 -11.66 6.57 99.48 0.65 -11.01 16 5 H -0.32 -15.92 7.11 99.48 0.71 -15.21 16 6 H -0.26 -11.38 6.66 99.48 0.66 -10.71 16 7 C -0.25 -14.37 9.67 84.03 0.81 -13.56 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 9 N -0.61 -27.57 2.28 -697.42 -1.59 -29.16 16 10 C 0.16 5.73 5.63 87.21 0.49 6.23 16 11 C -0.16 -5.32 5.64 29.04 0.16 -5.15 16 12 C 0.13 3.70 5.67 84.23 0.48 4.18 16 13 N -0.59 -18.75 2.46 -830.48 -2.04 -20.80 16 14 C 0.51 17.99 7.65 87.66 0.67 18.66 16 15 O -0.59 -24.77 15.46 -3.03 -0.05 -24.82 16 16 C -0.14 -3.95 4.12 29.85 0.12 -3.83 16 17 C -0.09 -2.52 4.52 30.60 0.14 -2.38 16 18 C -0.10 -2.37 4.50 30.60 0.14 -2.24 16 19 C -0.14 -2.50 5.70 29.85 0.17 -2.33 16 20 C 0.51 10.86 8.10 87.65 0.71 11.57 16 21 N -0.84 -10.12 8.87 -173.53 -1.54 -11.66 16 22 O -0.60 -18.88 16.82 -3.04 -0.05 -18.93 16 23 C 0.10 2.68 4.98 87.67 0.44 3.12 16 24 C 0.09 3.56 4.49 86.69 0.39 3.95 16 25 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 26 H 0.04 1.58 8.02 -2.38 -0.02 1.56 16 27 H 0.08 2.21 7.59 -2.39 -0.02 2.19 16 28 H 0.02 0.78 7.91 -2.39 -0.02 0.76 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 2.16 7.19 -2.39 -0.02 2.15 16 31 H 0.11 2.18 8.05 -2.39 -0.02 2.16 16 32 H 0.12 2.62 7.82 -2.39 -0.02 2.60 16 33 H 0.08 2.58 7.13 -2.39 -0.02 2.57 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 36 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 37 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.42 2.17 8.83 -92.71 -0.82 1.35 16 41 H 0.40 4.31 8.93 -92.71 -0.83 3.49 16 42 H 0.10 2.24 6.49 -2.39 -0.02 2.23 16 43 H 0.11 2.18 7.72 -2.39 -0.02 2.16 16 44 H 0.05 1.76 5.80 -2.39 -0.01 1.74 16 45 H 0.04 1.93 5.04 -2.39 -0.01 1.92 16 Total: -1.00 -84.96 349.77 1.10 -83.86 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.74 Total: 19.17 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 5.16 Total: 16.56 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -4.87 Total: -123.28 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -0.10 Total: -43.74 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.65 Total: 47.44 kcal Total: -84.96 1.10 -83.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197730896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.024 kcal (2) G-P(sol) polarization free energy of solvation -84.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds