Wall clock time and date at job start Tue Mar 31 2020 03:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48497 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47064 * 300.00072 * 3 2 1 6 6 H 1.48500 * 109.46761 * 59.99689 * 3 2 1 7 7 C 1.38812 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00066 * 197.38305 * 7 2 1 9 9 N 1.36938 * 119.99502 * 17.10182 * 7 2 1 10 10 C 1.46926 * 120.63369 * 27.80712 * 9 7 2 11 11 C 1.53625 * 108.54341 * 126.36257 * 10 9 7 12 12 C 1.53043 * 109.24019 * 54.85935 * 11 10 9 13 13 N 1.46499 * 109.44778 * 178.49789 * 12 11 10 14 14 C 1.34776 * 119.99871 * 275.06097 * 13 12 11 15 15 O 1.21589 * 120.00086 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00127 * 180.02562 * 14 13 12 17 17 C 1.47022 * 125.64558 * 359.68953 * 16 14 13 18 18 C 1.54323 * 107.27433 * 180.97064 * 17 16 14 19 19 C 1.55150 * 102.86390 * 22.52362 * 18 17 16 20 20 H 1.09000 * 111.00353 * 82.37933 * 19 18 17 21 21 C 1.52998 * 111.03953 * 206.21514 * 19 18 17 22 22 O 1.42903 * 109.47128 * 178.66683 * 21 19 18 23 23 C 1.47423 * 125.65104 * 180.02562 * 16 14 13 24 24 C 1.53038 * 109.53565 * 298.50851 * 12 11 10 25 25 C 1.46931 * 120.62849 * 208.07937 * 9 7 2 26 26 H 0.97000 * 119.99847 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.58437 * 246.19678 * 10 9 7 28 28 H 1.08998 * 109.58280 * 6.62531 * 10 9 7 29 29 H 1.09000 * 109.63612 * 294.87094 * 11 10 9 30 30 H 1.09000 * 109.42936 * 174.72446 * 11 10 9 31 31 H 1.08992 * 109.46248 * 58.52850 * 12 11 10 32 32 H 0.97006 * 120.00346 * 95.05995 * 13 12 11 33 33 H 1.09003 * 109.88554 * 300.51062 * 17 16 14 34 34 H 1.08996 * 109.88454 * 61.68104 * 17 16 14 35 35 H 1.08998 * 110.91924 * 264.11301 * 18 17 16 36 36 H 1.08994 * 110.59313 * 140.78593 * 18 17 16 37 37 H 1.08998 * 109.47071 * 298.67019 * 21 19 18 38 38 H 1.09000 * 109.46863 * 58.67549 * 21 19 18 39 39 H 0.96698 * 113.99879 * 180.02562 * 22 21 19 40 40 H 1.09009 * 110.36513 * 274.67425 * 23 16 14 41 41 H 1.09000 * 110.36937 * 36.99216 * 23 16 14 42 42 H 1.09002 * 109.49965 * 301.41235 * 24 12 11 43 43 H 1.09009 * 109.49914 * 181.32096 * 24 12 11 44 44 H 1.09002 * 109.58880 * 353.38103 * 25 9 7 45 45 H 1.09003 * 109.58252 * 113.80051 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2800 9 7 1.3709 -2.3619 -0.3477 10 6 0.2246 -2.3381 -1.2665 11 6 0.5013 -3.3160 -2.4185 12 6 0.8156 -4.6984 -1.8420 13 7 1.0451 -5.6432 -2.9379 14 6 0.0013 -6.2647 -3.5215 15 8 -1.1308 -6.0417 -3.1382 16 7 0.2125 -7.1343 -4.5293 17 6 1.5227 -7.4911 -5.0928 18 6 1.2715 -8.4971 -6.2358 19 6 -0.2020 -8.2120 -6.6292 20 1 -0.2680 -7.3593 -7.3049 21 6 -0.8547 -9.4498 -7.2476 22 8 -2.2169 -9.1601 -7.5682 23 6 -0.8326 -7.8800 -5.2540 24 6 2.0699 -4.6158 -0.9690 25 6 1.8145 -3.6533 0.1950 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6767 -2.6419 -0.7341 28 1 0.0953 -1.3311 -1.6632 29 1 1.3517 -2.9633 -3.0020 30 1 -0.3784 -3.3803 -3.0588 31 1 -0.0251 -5.0398 -1.2383 32 1 1.9484 -5.8214 -3.2435 33 1 2.0140 -6.5995 -5.4825 34 1 2.1432 -7.9530 -4.3248 35 1 1.3852 -9.5224 -5.8838 36 1 1.9395 -8.2996 -7.0740 37 1 -0.3191 -9.7279 -8.1552 38 1 -0.8166 -10.2746 -6.5359 39 1 -2.6939 -9.9019 -7.9647 40 1 -1.0834 -8.7969 -4.7205 41 1 -1.7202 -7.2605 -5.3832 42 1 2.9055 -4.2508 -1.5663 43 1 2.3067 -5.6053 -0.5777 44 1 2.7344 -3.5144 0.7629 45 1 1.0401 -4.0621 0.8442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318652279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:33 Heat of formation + Delta-G solvation = -57.777400 kcal Electronic energy + Delta-G solvation = -24650.573160 eV Core-core repulsion = 21089.437004 eV Total energy + Delta-G solvation = -3561.136156 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.30283 -38.54275 -37.26495 -36.43629 -34.32505 -32.60016 -31.66983 -29.91074 -29.57265 -29.28415 -26.10285 -24.71543 -23.22913 -22.16498 -21.76437 -20.71487 -19.79358 -19.29729 -18.06340 -17.52198 -16.80349 -16.61993 -15.68040 -15.40020 -14.92144 -14.55995 -14.32186 -13.96903 -13.73713 -13.49218 -13.44427 -13.08570 -12.96975 -12.90976 -12.42303 -12.30276 -12.13278 -11.70060 -11.43945 -11.35035 -11.08220 -11.03284 -10.87292 -10.70586 -10.39145 -10.32651 -10.17898 -10.04029 -9.90336 -9.70890 -9.49393 -8.80299 -8.50064 -8.30891 -6.64651 -5.74521 -3.17339 2.70090 3.39783 3.42474 3.47265 3.49470 3.66816 4.10345 4.21599 4.33414 4.52673 4.63460 4.83700 4.90846 5.00967 5.16127 5.24967 5.34143 5.36271 5.40985 5.44503 5.51020 5.63330 5.71768 5.79576 5.89790 5.90765 6.13784 6.16872 6.29563 6.44411 6.51696 6.67741 6.70275 6.84421 6.97543 7.03317 7.20347 7.23166 7.45005 7.74199 7.83679 8.16541 8.48982 8.83245 9.24940 9.88405 10.45307 11.33865 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.002836 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.546103 B = 9871.047668 C =10070.203747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.168 3.832 13 N -0.737 5.737 14 C 0.719 3.281 15 O -0.585 6.585 16 N -0.644 5.644 17 C 0.101 3.899 18 C -0.122 4.122 19 C -0.105 4.105 20 H 0.092 0.908 21 C 0.089 3.911 22 O -0.571 6.571 23 C 0.138 3.862 24 C -0.138 4.138 25 C 0.149 3.851 26 H 0.253 0.747 27 H 0.021 0.979 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.389 0.611 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.380 0.620 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -21.131 -15.038 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.187 4.187 12 C 0.064 3.936 13 N -0.391 5.391 14 C 0.421 3.579 15 O -0.462 6.462 16 N -0.384 5.384 17 C -0.023 4.023 18 C -0.160 4.160 19 C -0.124 4.124 20 H 0.111 0.889 21 C 0.010 3.990 22 O -0.376 6.376 23 C 0.014 3.986 24 C -0.178 4.178 25 C 0.021 3.979 26 H 0.064 0.936 27 H 0.039 0.961 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.222 0.778 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.227 0.773 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.766 -20.145 -14.372 24.901 hybrid contribution 0.800 0.178 -0.486 0.953 sum 3.567 -19.967 -14.859 25.144 Atomic orbital electron populations 1.70050 1.05262 1.25410 1.53789 1.25066 0.95277 0.98452 1.00951 0.86234 0.79304 0.84034 0.77256 1.20293 1.21591 1.21752 1.19217 0.92655 0.84795 1.41586 0.91598 1.44145 1.35783 1.01490 1.50173 1.20856 0.88549 0.98108 0.87709 1.22651 1.00400 0.95247 1.00419 1.20920 0.98542 0.88127 0.85986 1.45530 1.07651 1.46953 1.38926 1.15519 0.85186 0.78236 0.78925 1.90939 1.21571 1.67831 1.65860 1.47622 1.07808 1.46217 1.36744 1.21938 0.86256 0.98317 0.95783 1.22597 0.95690 0.99609 0.98059 1.22383 0.94458 0.98629 0.96935 0.88944 1.22068 0.82626 0.96006 0.98262 1.86530 1.23922 1.42537 1.84633 1.21955 0.91302 0.95848 0.89475 1.22338 0.96764 0.99630 0.99030 1.20839 0.97965 0.86763 0.92292 0.93640 0.96073 0.89252 0.92835 0.92862 0.90092 0.77792 0.91507 0.91544 0.90244 0.89689 0.93156 0.93254 0.77266 0.91986 0.90028 0.91958 0.92724 0.92352 0.96170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 11.18 55.49 0.62 -26.16 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.14 2.99 -172.05 -0.51 -15.65 16 10 C 0.17 4.38 5.33 -3.48 -0.02 4.37 16 11 C -0.15 -3.09 5.67 -26.38 -0.15 -3.24 16 12 C 0.17 3.12 2.41 -67.89 -0.16 2.95 16 13 N -0.74 -11.48 5.04 -58.64 -0.30 -11.78 16 14 C 0.72 12.30 8.45 -86.92 -0.73 11.56 16 15 O -0.58 -12.67 16.26 5.29 0.09 -12.58 16 16 N -0.64 -8.31 3.33 -176.25 -0.59 -8.90 16 17 C 0.10 0.85 6.14 -3.06 -0.02 0.83 16 18 C -0.12 -0.73 6.42 -24.90 -0.16 -0.89 16 19 C -0.10 -0.84 3.32 -88.49 -0.29 -1.13 16 20 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 21 C 0.09 0.54 6.49 37.16 0.24 0.78 16 22 O -0.57 -4.40 13.51 -35.23 -0.48 -4.88 16 23 C 0.14 1.60 6.24 -2.54 -0.02 1.58 16 24 C -0.14 -2.37 5.55 -26.61 -0.15 -2.52 16 25 C 0.15 3.13 6.51 -3.71 -0.02 3.11 16 26 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 2.50 6.04 -51.93 -0.31 2.19 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 32 H 0.39 4.88 7.59 -40.82 -0.31 4.57 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.38 8.04 -51.93 -0.42 -0.04 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.05 0.25 8.10 -51.93 -0.42 -0.17 16 39 H 0.38 1.15 9.12 45.56 0.42 1.56 16 40 H 0.06 0.69 8.00 -51.92 -0.42 0.27 16 41 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -35.15 356.45 -9.42 -44.57 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.88 Total: 2.89 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -1.72 Total: 10.21 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.78 Total: -62.49 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.39 Total: -17.46 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.15 -9.42 -44.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318652279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.203 kcal (2) G-P(sol) polarization free energy of solvation -35.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds