Wall clock time and date at job start Tue Mar 31 2020 03:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00208 * 2 1 4 4 H 1.48497 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47064 * 300.00072 * 3 2 1 6 6 H 1.48500 * 109.46761 * 59.99689 * 3 2 1 7 7 C 1.38812 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00066 * 197.38305 * 7 2 1 9 9 N 1.36938 * 119.99502 * 17.10182 * 7 2 1 10 10 C 1.46926 * 120.63369 * 27.80712 * 9 7 2 11 11 C 1.53625 * 108.54341 * 126.36257 * 10 9 7 12 12 C 1.53043 * 109.24019 * 54.85935 * 11 10 9 13 13 N 1.46499 * 109.44778 * 178.49789 * 12 11 10 14 14 C 1.34776 * 119.99871 * 275.06097 * 13 12 11 15 15 O 1.21589 * 120.00086 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00127 * 180.02562 * 14 13 12 17 17 C 1.47022 * 125.64558 * 359.68953 * 16 14 13 18 18 C 1.54323 * 107.27433 * 180.97064 * 17 16 14 19 19 C 1.55150 * 102.86390 * 22.52362 * 18 17 16 20 20 H 1.09000 * 111.00353 * 82.37933 * 19 18 17 21 21 C 1.52998 * 111.03953 * 206.21514 * 19 18 17 22 22 O 1.42903 * 109.47128 * 178.66683 * 21 19 18 23 23 C 1.47423 * 125.65104 * 180.02562 * 16 14 13 24 24 C 1.53038 * 109.53565 * 298.50851 * 12 11 10 25 25 C 1.46931 * 120.62849 * 208.07937 * 9 7 2 26 26 H 0.97000 * 119.99847 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.58437 * 246.19678 * 10 9 7 28 28 H 1.08998 * 109.58280 * 6.62531 * 10 9 7 29 29 H 1.09000 * 109.63612 * 294.87094 * 11 10 9 30 30 H 1.09000 * 109.42936 * 174.72446 * 11 10 9 31 31 H 1.08992 * 109.46248 * 58.52850 * 12 11 10 32 32 H 0.97006 * 120.00346 * 95.05995 * 13 12 11 33 33 H 1.09003 * 109.88554 * 300.51062 * 17 16 14 34 34 H 1.08996 * 109.88454 * 61.68104 * 17 16 14 35 35 H 1.08998 * 110.91924 * 264.11301 * 18 17 16 36 36 H 1.08994 * 110.59313 * 140.78593 * 18 17 16 37 37 H 1.08998 * 109.47071 * 298.67019 * 21 19 18 38 38 H 1.09000 * 109.46863 * 58.67549 * 21 19 18 39 39 H 0.96698 * 113.99879 * 180.02562 * 22 21 19 40 40 H 1.09009 * 110.36513 * 274.67425 * 23 16 14 41 41 H 1.09000 * 110.36937 * 36.99216 * 23 16 14 42 42 H 1.09002 * 109.49965 * 301.41235 * 24 12 11 43 43 H 1.09009 * 109.49914 * 181.32096 * 24 12 11 44 44 H 1.09002 * 109.58880 * 353.38103 * 25 9 7 45 45 H 1.09003 * 109.58252 * 113.80051 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2800 9 7 1.3709 -2.3619 -0.3477 10 6 0.2246 -2.3381 -1.2665 11 6 0.5013 -3.3160 -2.4185 12 6 0.8156 -4.6984 -1.8420 13 7 1.0451 -5.6432 -2.9379 14 6 0.0013 -6.2647 -3.5215 15 8 -1.1308 -6.0417 -3.1382 16 7 0.2125 -7.1343 -4.5293 17 6 1.5227 -7.4911 -5.0928 18 6 1.2715 -8.4971 -6.2358 19 6 -0.2020 -8.2120 -6.6292 20 1 -0.2680 -7.3593 -7.3049 21 6 -0.8547 -9.4498 -7.2476 22 8 -2.2169 -9.1601 -7.5682 23 6 -0.8326 -7.8800 -5.2540 24 6 2.0699 -4.6158 -0.9690 25 6 1.8145 -3.6533 0.1950 26 1 -0.4850 0.8401 -0.0004 27 1 -0.6767 -2.6419 -0.7341 28 1 0.0953 -1.3311 -1.6632 29 1 1.3517 -2.9633 -3.0020 30 1 -0.3784 -3.3803 -3.0588 31 1 -0.0251 -5.0398 -1.2383 32 1 1.9484 -5.8214 -3.2435 33 1 2.0140 -6.5995 -5.4825 34 1 2.1432 -7.9530 -4.3248 35 1 1.3852 -9.5224 -5.8838 36 1 1.9395 -8.2996 -7.0740 37 1 -0.3191 -9.7279 -8.1552 38 1 -0.8166 -10.2746 -6.5359 39 1 -2.6939 -9.9019 -7.9647 40 1 -1.0834 -8.7969 -4.7205 41 1 -1.7202 -7.2605 -5.3832 42 1 2.9055 -4.2508 -1.5663 43 1 2.3067 -5.6053 -0.5777 44 1 2.7344 -3.5144 0.7629 45 1 1.0401 -4.0621 0.8442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318652279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:32 Heat of formation + Delta-G solvation = -84.931400 kcal Electronic energy + Delta-G solvation = -24651.750645 eV Core-core repulsion = 21089.437004 eV Total energy + Delta-G solvation = -3562.313641 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.46577 -39.67366 -38.66157 -37.20346 -36.01773 -34.08496 -33.00824 -31.67127 -31.02956 -30.23393 -27.33187 -26.25323 -24.18618 -23.89928 -23.33838 -21.38615 -21.22562 -20.77992 -19.24202 -18.63005 -18.10975 -17.64342 -16.98999 -16.78083 -16.26698 -15.95809 -15.50123 -15.35522 -15.17827 -14.79095 -14.62507 -14.42996 -14.32980 -14.00677 -13.85213 -13.59025 -13.18739 -13.03462 -12.85771 -12.65699 -12.57765 -12.26177 -12.12808 -12.02505 -11.95053 -11.86588 -11.62915 -11.55421 -11.45481 -11.21841 -10.84698 -10.59905 -10.16681 -9.51773 -8.72810 -7.87350 -5.33868 1.46915 1.48529 1.55361 1.59743 2.10125 2.51675 2.96571 3.25677 3.29748 3.59966 3.65370 3.67999 3.86595 4.07619 4.10747 4.26350 4.32662 4.40801 4.45049 4.46378 4.57756 4.64736 4.66942 4.76727 4.78654 4.82805 4.87233 4.94432 5.01082 5.06893 5.09258 5.11959 5.26967 5.30523 5.35160 5.44703 5.57556 5.63836 5.68496 6.04919 6.38210 6.95972 6.98729 7.12605 7.54616 7.83528 8.36894 9.19968 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032119 B = 0.002836 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.546103 B = 9871.047668 C =10070.203747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.057 4.057 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.259 4.259 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.184 3.816 11 C -0.130 4.130 12 C 0.180 3.820 13 N -0.721 5.721 14 C 0.711 3.289 15 O -0.641 6.641 16 N -0.641 5.641 17 C 0.089 3.911 18 C -0.107 4.107 19 C -0.099 4.099 20 H 0.079 0.921 21 C 0.089 3.911 22 O -0.601 6.601 23 C 0.131 3.869 24 C -0.119 4.119 25 C 0.141 3.859 26 H 0.249 0.751 27 H -0.012 1.012 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.409 0.591 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.398 0.602 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -23.392 -16.546 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.389 4.389 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.170 4.170 12 C 0.074 3.926 13 N -0.376 5.376 14 C 0.413 3.587 15 O -0.523 6.523 16 N -0.379 5.379 17 C -0.033 4.033 18 C -0.145 4.145 19 C -0.119 4.119 20 H 0.097 0.903 21 C 0.011 3.989 22 O -0.410 6.410 23 C 0.008 3.992 24 C -0.158 4.158 25 C 0.015 3.985 26 H 0.058 0.942 27 H 0.006 0.994 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.246 0.754 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.249 0.751 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 6.181 -22.488 -15.930 28.243 hybrid contribution -0.292 0.803 -0.022 0.855 sum 5.889 -21.685 -15.952 27.557 Atomic orbital electron populations 1.70226 1.06996 1.25796 1.55626 1.25912 0.96008 1.01931 1.01376 0.85155 0.78834 0.79572 0.76574 1.18427 1.21986 1.22085 1.19629 0.93189 0.85704 1.40403 0.90594 1.44390 1.35469 1.02759 1.50671 1.20537 0.87791 0.97231 0.88694 1.22393 1.00010 0.96100 0.98513 1.20543 0.98569 0.86900 0.86567 1.45093 1.08430 1.45997 1.38061 1.15756 0.84475 0.78828 0.79658 1.90902 1.23852 1.69761 1.67806 1.47669 1.10308 1.44703 1.35223 1.22336 0.84032 0.99683 0.97216 1.22625 0.94144 0.99904 0.97791 1.22374 0.95975 0.99306 0.94200 0.90281 1.22159 0.82073 0.95087 0.99586 1.86486 1.25102 1.44336 1.85068 1.22083 0.90339 0.94919 0.91876 1.22128 0.95965 1.00461 0.97246 1.21057 0.97995 0.85531 0.93887 0.94212 0.99403 0.92594 0.91969 0.94331 0.92909 0.75431 0.90727 0.89620 0.88188 0.87063 0.90565 0.91920 0.75146 0.91546 0.93853 0.90458 0.89010 0.91027 0.97093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 11.18 21.65 0.24 -57.81 16 2 C -0.06 -3.28 4.92 84.86 0.42 -2.87 16 3 Si 0.97 45.56 29.59 68.60 2.03 47.59 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.26 -14.36 9.58 84.03 0.81 -13.55 16 8 H 0.08 3.99 7.89 -2.91 -0.02 3.97 16 9 N -0.61 -31.43 2.99 -698.26 -2.09 -33.51 16 10 C 0.18 9.71 5.33 86.51 0.46 10.17 16 11 C -0.13 -5.59 5.67 30.82 0.17 -5.41 16 12 C 0.18 6.58 2.41 45.02 0.11 6.69 16 13 N -0.72 -21.39 5.04 -457.69 -2.31 -23.70 16 14 C 0.71 24.29 8.45 179.05 1.51 25.80 16 15 O -0.64 -29.06 16.26 -4.00 -0.06 -29.13 16 16 N -0.64 -15.87 3.33 -829.79 -2.76 -18.63 16 17 C 0.09 1.21 6.14 86.73 0.53 1.74 16 18 C -0.11 -0.83 6.42 31.78 0.20 -0.63 16 19 C -0.10 -1.38 3.32 -9.41 -0.03 -1.41 16 20 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 21 C 0.09 0.85 6.49 71.98 0.47 1.32 16 22 O -0.60 -8.59 13.51 -148.98 -2.01 -10.60 16 23 C 0.13 3.02 6.24 86.85 0.54 3.56 16 24 C -0.12 -3.77 5.55 30.67 0.17 -3.60 16 25 C 0.14 5.80 6.51 86.36 0.56 6.36 16 26 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 27 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 28 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 29 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 32 H 0.41 8.93 7.59 -92.70 -0.70 8.22 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.44 8.04 -2.39 -0.02 0.42 16 36 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.06 0.44 8.10 -2.39 -0.02 0.42 16 39 H 0.40 1.86 9.12 -74.06 -0.68 1.19 16 40 H 0.07 1.45 8.00 -2.38 -0.02 1.43 16 41 H 0.04 1.31 8.04 -2.39 -0.02 1.29 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.09 2.32 8.14 -2.38 -0.02 2.31 16 44 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 45 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -81.37 356.45 -1.42 -82.79 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -0.39 Total: 14.82 kcal Atomic # 6 Polarization: 22.24 SS G_CDS: 5.93 Total: 28.17 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.91 Total: -133.64 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -2.08 Total: -39.73 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -81.37 -1.42 -82.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318652279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.141 kcal (2) G-P(sol) polarization free energy of solvation -81.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds