Wall clock time and date at job start Tue Mar 31 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 119.99986 * 2 1 4 4 H 1.48493 * 109.47492 * 269.99936 * 3 2 1 5 5 H 1.48504 * 109.47464 * 30.00280 * 3 2 1 6 6 H 1.48502 * 109.47235 * 149.99831 * 3 2 1 7 7 C 1.37879 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99956 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46854 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46939 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47224 * 180.02562 * 11 10 9 13 13 C 1.34771 * 119.99810 * 179.97438 * 12 11 10 14 14 O 1.21350 * 120.00583 * 0.02562 * 13 12 11 15 15 C 1.49452 * 119.99798 * 179.97438 * 13 12 11 16 16 O 1.21353 * 120.00105 * 0.02562 * 15 13 12 17 17 N 1.34775 * 120.00183 * 179.97438 * 15 13 12 18 18 C 1.47026 * 125.64796 * 0.04639 * 17 15 13 19 19 C 1.54369 * 107.28610 * 181.05531 * 18 17 15 20 20 C 1.55155 * 102.92344 * 22.13848 * 19 18 17 21 21 H 1.09006 * 111.00168 * 82.63686 * 20 19 18 22 22 C 1.53001 * 111.00382 * 206.44850 * 20 19 18 23 23 C 1.53000 * 109.46886 * 181.81786 * 22 20 19 24 24 N 1.46901 * 109.46769 * 180.02562 * 23 22 20 25 25 C 1.47429 * 125.64804 * 180.02562 * 17 15 13 26 26 H 0.97001 * 120.00261 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46793 * 60.00946 * 9 7 2 28 28 H 1.08989 * 109.47525 * 300.00422 * 9 7 2 29 29 H 1.08996 * 109.47565 * 60.00560 * 10 9 7 30 30 H 1.08996 * 109.47089 * 299.99954 * 10 9 7 31 31 H 1.09007 * 109.47398 * 59.99748 * 11 10 9 32 32 H 1.09002 * 109.47200 * 299.99697 * 11 10 9 33 33 H 0.96998 * 119.99892 * 359.97438 * 12 11 10 34 34 H 1.08999 * 109.87919 * 300.43841 * 18 17 15 35 35 H 1.08995 * 109.88158 * 61.44752 * 18 17 15 36 36 H 1.08992 * 110.70650 * 263.78973 * 19 18 17 37 37 H 1.09006 * 110.75389 * 140.50512 * 19 18 17 38 38 H 1.09001 * 109.46652 * 61.82131 * 22 20 19 39 39 H 1.08992 * 109.47514 * 301.82220 * 22 20 19 40 40 H 1.09002 * 109.47398 * 300.00496 * 23 22 20 41 41 H 1.09001 * 109.47194 * 60.00677 * 23 22 20 42 42 H 1.00908 * 110.99847 * 180.02562 * 24 23 22 43 43 H 1.00899 * 111.00283 * 303.95539 * 24 23 22 44 44 H 1.08990 * 110.36759 * 37.06981 * 25 17 15 45 45 H 1.08999 * 110.45932 * 274.78872 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0006 13 6 1.9829 -7.3713 -0.0005 14 8 0.7899 -7.5931 -0.0013 15 6 2.9541 -8.5073 -0.0004 16 8 4.1472 -8.2856 0.0000 17 7 2.5049 -9.7779 0.0002 18 6 1.0928 -10.1876 -0.0001 19 6 1.0629 -11.7307 0.0281 20 6 2.4535 -12.0942 0.6124 21 1 2.4476 -12.0345 1.7008 22 6 2.8995 -13.4809 0.1445 23 6 4.2507 -13.8220 0.7760 24 7 4.6792 -15.1532 0.3263 25 6 3.3480 -10.9873 0.0009 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8895 29 1 2.8719 -3.6044 0.8894 30 1 2.8719 -3.6043 -0.8905 31 1 0.8538 -5.0446 -0.8914 32 1 0.8533 -5.0451 0.8886 33 1 3.3859 -5.9234 -0.0002 34 1 0.5918 -9.7915 0.8833 35 1 0.6007 -9.8209 -0.9008 36 1 0.9507 -12.1324 -0.9789 37 1 0.2654 -12.0898 0.6787 38 1 2.9945 -13.4848 -0.9413 39 1 2.1596 -14.2219 0.4471 40 1 4.9906 -13.0810 0.4734 41 1 4.1557 -13.8181 1.8618 42 1 5.5698 -15.4021 0.7303 43 1 3.9796 -15.8489 0.5377 44 1 4.2337 -10.8320 0.6168 45 1 3.6358 -11.2517 -1.0166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338296454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:22 Heat of formation + Delta-G solvation = -114.016504 kcal Electronic energy + Delta-G solvation = -23336.083893 eV Core-core repulsion = 19772.509027 eV Total energy + Delta-G solvation = -3563.574866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.91458 -40.12260 -38.93074 -37.18155 -36.29382 -35.23661 -33.32239 -33.02904 -30.70256 -29.18697 -28.28542 -26.18864 -24.92052 -23.35145 -22.69129 -22.38340 -21.25649 -20.79033 -18.91515 -18.47306 -18.11671 -17.63848 -17.08216 -16.76698 -16.41216 -16.39541 -16.06411 -15.69727 -15.42069 -15.02379 -14.66857 -14.56323 -14.29783 -14.07772 -13.87462 -13.78873 -13.52378 -13.41465 -12.90404 -12.76851 -12.74470 -12.55464 -12.41945 -12.39288 -11.85476 -11.71599 -11.60378 -11.56288 -11.48824 -11.24066 -10.66948 -10.55323 -10.34118 -9.89981 -9.58543 -8.20006 -6.30960 0.25969 1.16771 1.41763 1.42575 1.53683 2.04155 2.37754 2.44146 3.13835 3.20544 3.44562 3.56172 3.64870 4.01791 4.06584 4.16431 4.23484 4.25973 4.30267 4.43264 4.50833 4.59182 4.63098 4.79974 4.84356 4.89905 4.90342 4.90849 4.95677 5.06237 5.13274 5.15833 5.22805 5.26019 5.43149 5.50684 5.69661 5.83554 5.92957 6.15274 6.23136 6.26250 6.57403 6.61507 6.85411 6.86221 7.38347 8.91804 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.047371 B = 0.002039 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.935920 B =13726.387389 C =14228.932014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.129 3.871 12 N -0.688 5.688 13 C 0.502 3.498 14 O -0.538 6.538 15 C 0.520 3.480 16 O -0.547 6.547 17 N -0.589 5.589 18 C 0.101 3.899 19 C -0.119 4.119 20 C -0.089 4.089 21 H 0.091 0.909 22 C -0.097 4.097 23 C 0.056 3.944 24 N -0.863 5.863 25 C 0.103 3.897 26 H 0.263 0.737 27 H -0.003 1.003 28 H -0.003 1.003 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.418 0.582 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.348 0.652 43 H 0.347 0.653 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 -31.621 1.854 32.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.006 3.994 12 N -0.340 5.340 13 C 0.283 3.717 14 O -0.416 6.416 15 C 0.303 3.697 16 O -0.425 6.425 17 N -0.322 5.322 18 C -0.021 4.021 19 C -0.156 4.156 20 C -0.109 4.109 21 H 0.110 0.890 22 C -0.135 4.135 23 C -0.075 4.075 24 N -0.394 5.394 25 C -0.019 4.019 26 H 0.072 0.928 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.094 0.906 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.424 -31.141 1.124 31.630 hybrid contribution 0.462 1.196 0.974 1.610 sum 5.886 -29.946 2.098 30.591 Atomic orbital electron populations 1.70095 1.07775 1.27783 1.51566 1.25976 0.95768 1.03380 0.94762 0.85436 0.78648 0.78452 0.78433 1.19856 1.20881 1.18723 1.21679 0.93704 0.92157 1.50626 0.91828 1.18933 0.94333 0.92535 0.95477 1.21644 0.98660 0.91936 1.02172 1.21474 0.91508 0.84394 1.01988 1.45882 1.12239 1.04584 1.71304 1.20178 0.88521 0.84622 0.78398 1.90732 1.16763 1.84802 1.49277 1.19754 0.87870 0.83613 0.78492 1.90748 1.16753 1.84443 1.50557 1.48401 1.10506 1.04310 1.69009 1.22354 0.80006 0.96749 1.03020 1.22801 0.97709 0.91536 1.03579 1.22333 0.94118 0.93525 1.00891 0.89025 1.21431 0.96364 0.94372 1.01311 1.21847 0.97136 0.91489 0.97058 1.58717 1.08618 1.04213 1.67814 1.22669 0.94442 0.82570 1.02170 0.92780 0.98472 0.98456 0.91516 0.91526 0.91702 0.91687 0.74484 0.91072 0.91153 0.89053 0.87646 0.91021 0.89843 0.91818 0.94947 0.83902 0.83966 0.90599 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.29 4.97 29.85 0.15 1.43 16 10 C -0.11 -4.15 5.27 30.60 0.16 -3.99 16 11 C 0.13 4.49 5.67 86.38 0.49 4.98 16 12 N -0.69 -21.02 5.55 -464.39 -2.58 -23.59 16 13 C 0.50 15.49 7.86 87.27 0.69 16.18 16 14 O -0.54 -18.20 14.12 -3.25 -0.05 -18.25 16 15 C 0.52 14.67 7.91 87.27 0.69 15.36 16 16 O -0.55 -17.38 16.73 -3.26 -0.05 -17.44 16 17 N -0.59 -12.95 3.33 -813.31 -2.71 -15.65 16 18 C 0.10 1.82 5.49 86.74 0.48 2.30 16 19 C -0.12 -1.15 6.42 31.80 0.20 -0.95 16 20 C -0.09 -0.86 3.03 -9.41 -0.03 -0.89 16 21 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 22 C -0.10 -0.71 4.98 30.59 0.15 -0.56 16 23 C 0.06 0.48 6.66 86.30 0.58 1.05 16 24 N -0.86 -7.11 9.62 -186.71 -1.80 -8.91 16 25 C 0.10 1.64 5.71 86.85 0.50 2.13 16 26 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 31 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.42 11.64 7.94 -92.71 -0.74 10.90 16 34 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 35 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 36 H 0.09 0.73 8.04 -2.39 -0.02 0.71 16 37 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.07 0.64 8.03 -2.39 -0.02 0.62 16 39 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.06 0.69 7.59 -2.39 -0.02 0.67 16 41 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.35 2.18 9.08 -89.69 -0.81 1.36 16 43 H 0.35 1.85 8.99 -89.69 -0.81 1.05 16 44 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 45 H 0.08 1.23 7.95 -2.39 -0.02 1.21 16 Total: -1.00 -69.80 370.43 -1.48 -71.27 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -1.36 Total: 15.53 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.75 Total: 7.19 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -6.79 Total: -104.40 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.10 Total: -35.68 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -69.80 -1.48 -71.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338296454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.743 kcal (2) G-P(sol) polarization free energy of solvation -69.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds