Wall clock time and date at job start Tue Mar 31 2020 03:11:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86799 * 120.00279 * 2 1
4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1
5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1
6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1
7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1
9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7
12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9
13 13 C 1.34779 * 120.00107 * 180.02562 * 12 11 10
14 14 O 1.21354 * 119.99475 * 0.02562 * 13 12 11
15 15 C 1.49446 * 120.00569 * 180.02562 * 13 12 11
16 16 O 1.21349 * 119.99550 * 0.02562 * 15 13 12
17 17 N 1.34774 * 120.00198 * 180.02562 * 15 13 12
18 18 C 1.47014 * 125.64867 * 0.02562 * 17 15 13
19 19 C 1.54325 * 107.26871 * 178.90487 * 18 17 15
20 20 C 1.55160 * 102.94516 * 337.80556 * 19 18 17
21 21 H 1.08995 * 111.00377 * 277.43078 * 20 19 18
22 22 C 1.52995 * 111.00184 * 153.57641 * 20 19 18
23 23 C 1.53010 * 109.46890 * 175.00405 * 22 20 19
24 24 N 1.46894 * 109.46929 * 180.02562 * 23 22 20
25 25 C 1.47423 * 125.64366 * 179.71366 * 17 15 13
26 26 H 0.97004 * 119.99097 * 359.97438 * 1 2 3
27 27 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
28 28 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
29 29 H 1.09001 * 109.46801 * 300.00442 * 10 9 7
30 30 H 1.09001 * 109.46998 * 60.00038 * 10 9 7
31 31 H 1.08996 * 109.46952 * 300.00302 * 11 10 9
32 32 H 1.09001 * 109.46832 * 60.00321 * 11 10 9
33 33 H 0.96999 * 120.00356 * 0.02562 * 12 11 10
34 34 H 1.08997 * 109.88702 * 298.32089 * 18 17 15
35 35 H 1.09001 * 109.88077 * 59.33266 * 18 17 15
36 36 H 1.08997 * 110.72341 * 96.17481 * 19 18 17
37 37 H 1.09008 * 110.71983 * 219.27079 * 19 18 17
38 38 H 1.09001 * 109.47380 * 294.99784 * 22 20 19
39 39 H 1.09001 * 109.47665 * 55.00563 * 22 20 19
40 40 H 1.09001 * 109.46602 * 299.99855 * 23 22 20
41 41 H 1.09001 * 109.46837 * 59.99651 * 23 22 20
42 42 H 1.00900 * 111.00755 * 56.04563 * 24 23 22
43 43 H 1.00905 * 110.99648 * 180.02562 * 24 23 22
44 44 H 1.08999 * 110.37246 * 323.00704 * 25 17 15
45 45 H 1.09009 * 110.36726 * 85.32799 * 25 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4968 2.0464 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 6 3.5115 -1.1941 0.0000
10 6 4.0215 -2.6367 0.0001
11 6 5.5515 -2.6367 0.0001
12 7 6.0397 -4.0179 0.0009
13 6 7.3648 -4.2643 0.0016
14 8 8.1534 -3.3419 0.0020
15 6 7.8630 -5.6733 0.0017
16 8 7.0744 -6.5956 0.0008
17 7 9.1880 -5.9196 0.0030
18 6 10.2487 -4.9017 0.0047
19 6 11.5994 -5.6475 0.0338
20 6 11.2186 -7.0336 0.6179
21 1 11.1680 -6.9985 1.7061
22 6 12.1972 -8.1130 0.1511
23 6 11.8651 -9.4365 0.8435
24 7 12.8050 -10.4727 0.3958
25 6 9.8137 -7.2545 0.0093
26 1 -0.4849 0.8402 0.0004
27 1 3.8751 -0.6798 0.8895
28 1 3.8745 -0.6809 -0.8904
29 1 3.6584 -3.1503 0.8903
30 1 3.6578 -3.1507 -0.8897
31 1 5.9148 -2.1229 -0.8898
32 1 5.9147 -2.1229 0.8901
33 1 5.4094 -4.7552 0.0009
34 1 10.1805 -4.2935 -0.8972
35 1 10.1532 -4.2684 0.8867
36 1 12.0045 -5.7513 -0.9728
37 1 12.3094 -5.1345 0.6827
38 1 12.1135 -8.2370 -0.9286
39 1 13.2146 -7.8155 0.4049
40 1 11.9487 -9.3125 1.9232
41 1 10.8476 -9.7340 0.5897
42 1 13.7597 -10.1913 0.5619
43 1 12.6061 -11.3571 0.8389
44 1 9.2358 -7.9415 0.6273
45 1 9.8994 -7.6381 -1.0075
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001338296802.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:11:25
Heat of formation + Delta-G solvation = -86.112613 kcal
Electronic energy + Delta-G solvation = -23384.131120 eV
Core-core repulsion = 19821.766257 eV
Total energy + Delta-G solvation = -3562.364863 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.89182 -39.18318 -37.97073 -36.04195 -35.52942 -33.38634 -32.62268 -31.47828
-30.09863 -28.14038 -27.34362 -25.10595 -23.51600 -22.31928 -21.88600 -20.82466
-20.62773 -19.60773 -17.90080 -17.19047 -16.80637 -16.71756 -16.25651 -15.64306
-15.53923 -15.40995 -14.80316 -14.45375 -14.35153 -14.01969 -13.85926 -13.75158
-13.28658 -13.10229 -12.75006 -12.72687 -12.37259 -12.08621 -11.98192 -11.96835
-11.73146 -11.29686 -11.12255 -11.10414 -11.01724 -10.92266 -10.16692 -9.97310
-9.78248 -9.47258 -9.24742 -9.24267 -9.13743 -8.95937 -8.56550 -6.06947
-4.05914 1.38648 2.18696 3.17110 3.30045 3.37567 3.40537 3.41162
3.87864 4.00479 4.17740 4.41459 4.43181 4.44275 4.66939 4.72830
4.90165 4.94528 5.02216 5.21842 5.26740 5.29958 5.40183 5.43951
5.47988 5.54471 5.56590 5.57006 5.68403 5.79944 5.91530 5.92954
6.16978 6.38724 6.54933 6.56689 6.73712 6.87214 6.92917 7.19404
7.25018 7.33085 7.64925 7.74449 8.00335 8.49544 8.97185 9.54855
11.06261
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.045196 B = 0.002137 C = 0.002054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 619.368564 B =13100.257231 C =13626.227882
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.067 3.933
3 Si 0.880 3.120
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.265 1.265
7 C -0.523 4.523
8 H 0.073 0.927
9 C -0.010 4.010
10 C -0.116 4.116
11 C 0.113 3.887
12 N -0.692 5.692
13 C 0.503 3.497
14 O -0.523 6.523
15 C 0.521 3.479
16 O -0.521 6.521
17 N -0.595 5.595
18 C 0.107 3.893
19 C -0.130 4.130
20 C -0.102 4.102
21 H 0.087 0.913
22 C -0.106 4.106
23 C 0.057 3.943
24 N -0.854 5.854
25 C 0.109 3.891
26 H 0.263 0.737
27 H 0.019 0.981
28 H 0.015 0.985
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.412 0.588
34 H 0.080 0.920
35 H 0.080 0.920
36 H 0.079 0.921
37 H 0.085 0.915
38 H 0.076 0.924
39 H 0.068 0.932
40 H 0.027 0.973
41 H 0.074 0.926
42 H 0.340 0.660
43 H 0.343 0.657
44 H 0.081 0.919
45 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.469 -16.876 1.763 33.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.541 5.541
2 C -0.135 4.135
3 Si 0.707 3.293
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.189 1.189
7 C -0.561 4.561
8 H 0.091 0.909
9 C -0.048 4.048
10 C -0.154 4.154
11 C -0.009 4.009
12 N -0.344 5.344
13 C 0.283 3.717
14 O -0.399 6.399
15 C 0.304 3.696
16 O -0.397 6.397
17 N -0.329 5.329
18 C -0.016 4.016
19 C -0.168 4.168
20 C -0.121 4.121
21 H 0.105 0.895
22 C -0.144 4.144
23 C -0.074 4.074
24 N -0.383 5.383
25 C -0.013 4.013
26 H 0.073 0.927
27 H 0.038 0.962
28 H 0.033 0.967
29 H 0.082 0.918
30 H 0.082 0.918
31 H 0.089 0.911
32 H 0.088 0.912
33 H 0.248 0.752
34 H 0.098 0.902
35 H 0.098 0.902
36 H 0.098 0.902
37 H 0.103 0.897
38 H 0.095 0.905
39 H 0.086 0.914
40 H 0.046 0.954
41 H 0.093 0.907
42 H 0.152 0.848
43 H 0.155 0.845
44 H 0.100 0.900
45 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges 28.021 -16.413 1.034 32.490
hybrid contribution 0.274 0.571 1.008 1.191
sum 28.294 -15.842 2.043 32.492
Atomic orbital electron populations
1.69919 1.06311 1.26947 1.50903 1.25032 0.94756 0.99223 0.94469
0.86770 0.80375 0.83544 0.78567 1.20247 1.21353 1.18927 1.21095
0.89263 0.94585 1.51164 0.90931 1.19502 0.97368 0.91249 0.96697
1.21747 0.90148 1.01266 1.02195 1.21833 0.96642 0.80056 1.02415
1.46008 1.05998 1.11088 1.71305 1.19908 0.83901 0.88912 0.78957
1.90738 1.55055 1.45487 1.48663 1.20026 0.81552 0.90006 0.77996
1.90770 1.54283 1.45943 1.48718 1.48234 1.04722 1.08881 1.71103
1.22197 0.85044 0.90396 1.03915 1.22795 0.96631 0.95024 1.02341
1.22347 0.93893 0.95064 1.00839 0.89513 1.21511 0.98563 0.92780
1.01529 1.21870 0.97251 0.91714 0.96579 1.58696 1.06995 1.05887
1.66718 1.22398 0.92789 0.84459 1.01661 0.92685 0.96244 0.96679
0.91796 0.91801 0.91138 0.91152 0.75172 0.90202 0.90156 0.90208
0.89660 0.90498 0.91355 0.95426 0.90717 0.84821 0.84469 0.90016
0.90649
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16
2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16
3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16
7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16
8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16
9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16
10 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16
11 C 0.11 1.82 5.67 -4.05 -0.02 1.80 16
12 N -0.69 -10.18 5.55 -60.73 -0.34 -10.51 16
13 C 0.50 7.46 7.86 -11.59 -0.09 7.37 16
14 O -0.52 -8.42 14.12 5.49 0.08 -8.34 16
15 C 0.52 7.19 7.91 -11.59 -0.09 7.10 16
16 O -0.52 -8.17 16.73 5.50 0.09 -8.08 16
17 N -0.59 -6.52 3.33 -171.17 -0.57 -7.09 16
18 C 0.11 0.97 5.49 -3.07 -0.02 0.96 16
19 C -0.13 -0.75 6.42 -24.89 -0.16 -0.91 16
20 C -0.10 -0.58 2.99 -88.59 -0.27 -0.84 16
21 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
22 C -0.11 -0.50 4.99 -26.73 -0.13 -0.63 16
23 C 0.06 0.28 6.69 -3.82 -0.03 0.26 16
24 N -0.85 -4.11 9.62 -10.37 -0.10 -4.21 16
25 C 0.11 0.91 5.85 -2.65 -0.02 0.89 16
26 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16
27 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16
28 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16
29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16
30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16
31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
33 H 0.41 5.64 7.94 -40.82 -0.32 5.31 16
34 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16
35 H 0.08 0.80 7.57 -51.93 -0.39 0.40 16
36 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16
37 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16
38 H 0.08 0.42 7.96 -51.93 -0.41 0.01 16
39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16
40 H 0.03 0.13 8.14 -51.93 -0.42 -0.29 16
41 H 0.07 0.43 7.75 -51.93 -0.40 0.03 16
42 H 0.34 1.19 8.99 -39.29 -0.35 0.84 16
43 H 0.34 1.26 9.08 -39.29 -0.36 0.90 16
44 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16
45 H 0.08 0.61 7.90 -51.92 -0.41 0.20 16
LS Contribution 367.03 15.07 5.53 5.53
Total: -1.00 -33.07 367.03 -8.33 -41.40
By element:
Atomic # 1 Polarization: 8.85 SS G_CDS: -7.62 Total: 1.23 kcal
Atomic # 6 Polarization: 1.61 SS G_CDS: -1.51 Total: 0.11 kcal
Atomic # 7 Polarization: -48.54 SS G_CDS: -0.23 Total: -48.78 kcal
Atomic # 8 Polarization: -16.60 SS G_CDS: 0.17 Total: -16.43 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -33.07 -8.33 -41.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001338296802.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.708 kcal
(2) G-P(sol) polarization free energy of solvation -33.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.113 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds