Wall clock time and date at job start Tue Mar 31 2020 03:11:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86799 * 120.00279 * 2 1
4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1
5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1
6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1
7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1
9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1
10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2
11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7
12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9
13 13 C 1.34779 * 120.00107 * 180.02562 * 12 11 10
14 14 O 1.21354 * 119.99475 * 0.02562 * 13 12 11
15 15 C 1.49446 * 120.00569 * 180.02562 * 13 12 11
16 16 O 1.21349 * 119.99550 * 0.02562 * 15 13 12
17 17 N 1.34774 * 120.00198 * 180.02562 * 15 13 12
18 18 C 1.47014 * 125.64867 * 0.02562 * 17 15 13
19 19 C 1.54325 * 107.26871 * 178.90487 * 18 17 15
20 20 C 1.55160 * 102.94516 * 337.80556 * 19 18 17
21 21 H 1.08995 * 111.00377 * 277.43078 * 20 19 18
22 22 C 1.52995 * 111.00184 * 153.57641 * 20 19 18
23 23 C 1.53010 * 109.46890 * 175.00405 * 22 20 19
24 24 N 1.46894 * 109.46929 * 180.02562 * 23 22 20
25 25 C 1.47423 * 125.64366 * 179.71366 * 17 15 13
26 26 H 0.97004 * 119.99097 * 359.97438 * 1 2 3
27 27 H 1.09001 * 109.46665 * 60.00499 * 9 7 2
28 28 H 1.08993 * 109.47304 * 300.00055 * 9 7 2
29 29 H 1.09001 * 109.46801 * 300.00442 * 10 9 7
30 30 H 1.09001 * 109.46998 * 60.00038 * 10 9 7
31 31 H 1.08996 * 109.46952 * 300.00302 * 11 10 9
32 32 H 1.09001 * 109.46832 * 60.00321 * 11 10 9
33 33 H 0.96999 * 120.00356 * 0.02562 * 12 11 10
34 34 H 1.08997 * 109.88702 * 298.32089 * 18 17 15
35 35 H 1.09001 * 109.88077 * 59.33266 * 18 17 15
36 36 H 1.08997 * 110.72341 * 96.17481 * 19 18 17
37 37 H 1.09008 * 110.71983 * 219.27079 * 19 18 17
38 38 H 1.09001 * 109.47380 * 294.99784 * 22 20 19
39 39 H 1.09001 * 109.47665 * 55.00563 * 22 20 19
40 40 H 1.09001 * 109.46602 * 299.99855 * 23 22 20
41 41 H 1.09001 * 109.46837 * 59.99651 * 23 22 20
42 42 H 1.00900 * 111.00755 * 56.04563 * 24 23 22
43 43 H 1.00905 * 110.99648 * 180.02562 * 24 23 22
44 44 H 1.08999 * 110.37246 * 323.00704 * 25 17 15
45 45 H 1.09009 * 110.36726 * 85.32799 * 25 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4968 2.0464 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 6 3.5115 -1.1941 0.0000
10 6 4.0215 -2.6367 0.0001
11 6 5.5515 -2.6367 0.0001
12 7 6.0397 -4.0179 0.0009
13 6 7.3648 -4.2643 0.0016
14 8 8.1534 -3.3419 0.0020
15 6 7.8630 -5.6733 0.0017
16 8 7.0744 -6.5956 0.0008
17 7 9.1880 -5.9196 0.0030
18 6 10.2487 -4.9017 0.0047
19 6 11.5994 -5.6475 0.0338
20 6 11.2186 -7.0336 0.6179
21 1 11.1680 -6.9985 1.7061
22 6 12.1972 -8.1130 0.1511
23 6 11.8651 -9.4365 0.8435
24 7 12.8050 -10.4727 0.3958
25 6 9.8137 -7.2545 0.0093
26 1 -0.4849 0.8402 0.0004
27 1 3.8751 -0.6798 0.8895
28 1 3.8745 -0.6809 -0.8904
29 1 3.6584 -3.1503 0.8903
30 1 3.6578 -3.1507 -0.8897
31 1 5.9148 -2.1229 -0.8898
32 1 5.9147 -2.1229 0.8901
33 1 5.4094 -4.7552 0.0009
34 1 10.1805 -4.2935 -0.8972
35 1 10.1532 -4.2684 0.8867
36 1 12.0045 -5.7513 -0.9728
37 1 12.3094 -5.1345 0.6827
38 1 12.1135 -8.2370 -0.9286
39 1 13.2146 -7.8155 0.4049
40 1 11.9487 -9.3125 1.9232
41 1 10.8476 -9.7340 0.5897
42 1 13.7597 -10.1913 0.5619
43 1 12.6061 -11.3571 0.8389
44 1 9.2358 -7.9415 0.6273
45 1 9.8994 -7.6381 -1.0075
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001338296802.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:11:24
Heat of formation + Delta-G solvation = -111.566960 kcal
Electronic energy + Delta-G solvation = -23385.234903 eV
Core-core repulsion = 19821.766257 eV
Total energy + Delta-G solvation = -3563.468646 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.91268 -40.12405 -38.93325 -37.20516 -36.30069 -35.19010 -33.41041 -33.19919
-30.70328 -29.47153 -28.38798 -26.15548 -24.74555 -23.23100 -22.68375 -22.30062
-21.27182 -20.78724 -19.10331 -18.67287 -18.13940 -17.63623 -17.07971 -16.81066
-16.42319 -16.21187 -16.05748 -15.71179 -15.34923 -15.03474 -14.78587 -14.68917
-14.55953 -14.08741 -13.89610 -13.81989 -13.62251 -13.41240 -12.90226 -12.79316
-12.73073 -12.67120 -12.42142 -11.91904 -11.86429 -11.78068 -11.62382 -11.59406
-11.48910 -11.34495 -10.76012 -10.68120 -10.32957 -9.89667 -9.58728 -8.28956
-6.33612 0.26370 1.17383 1.38116 1.39697 1.51575 2.04581 2.37088
2.40587 3.06724 3.20841 3.45422 3.55820 3.64408 4.00186 4.01552
4.15704 4.23465 4.25578 4.30443 4.43211 4.46282 4.58966 4.63226
4.78435 4.81466 4.84906 4.89965 4.90648 4.95335 5.00545 5.06101
5.14339 5.19436 5.25561 5.43031 5.45067 5.54158 5.64392 5.93766
6.16410 6.25955 6.27348 6.56767 6.61297 6.74636 6.85790 7.31136
8.87620
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.045196 B = 0.002137 C = 0.002054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 619.368564 B =13100.257231 C =13626.227882
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C 0.003 3.997
3 Si 0.951 3.049
4 H -0.267 1.267
5 H -0.286 1.286
6 H -0.243 1.243
7 C -0.534 4.534
8 H 0.034 0.966
9 C -0.010 4.010
10 C -0.105 4.105
11 C 0.126 3.874
12 N -0.690 5.690
13 C 0.504 3.496
14 O -0.536 6.536
15 C 0.518 3.482
16 O -0.548 6.548
17 N -0.589 5.589
18 C 0.101 3.899
19 C -0.119 4.119
20 C -0.089 4.089
21 H 0.091 0.909
22 C -0.097 4.097
23 C 0.056 3.944
24 N -0.863 5.863
25 C 0.102 3.898
26 H 0.266 0.734
27 H 0.026 0.974
28 H 0.024 0.976
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.073 0.927
32 H 0.073 0.927
33 H 0.417 0.583
34 H 0.071 0.929
35 H 0.072 0.928
36 H 0.090 0.910
37 H 0.105 0.895
38 H 0.071 0.929
39 H 0.083 0.917
40 H 0.032 0.968
41 H 0.063 0.937
42 H 0.347 0.653
43 H 0.348 0.652
44 H 0.074 0.926
45 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 31.787 -16.552 1.908 35.890
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.592 5.592
2 C -0.194 4.194
3 Si 0.774 3.226
4 H -0.192 1.192
5 H -0.211 1.211
6 H -0.167 1.167
7 C -0.572 4.572
8 H 0.052 0.948
9 C -0.048 4.048
10 C -0.143 4.143
11 C 0.003 3.997
12 N -0.342 5.342
13 C 0.285 3.715
14 O -0.413 6.413
15 C 0.301 3.699
16 O -0.427 6.427
17 N -0.323 5.323
18 C -0.021 4.021
19 C -0.157 4.157
20 C -0.109 4.109
21 H 0.109 0.891
22 C -0.135 4.135
23 C -0.075 4.075
24 N -0.394 5.394
25 C -0.019 4.019
26 H 0.075 0.925
27 H 0.044 0.956
28 H 0.043 0.957
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.092 0.908
32 H 0.091 0.909
33 H 0.254 0.746
34 H 0.090 0.910
35 H 0.091 0.909
36 H 0.109 0.891
37 H 0.124 0.876
38 H 0.089 0.911
39 H 0.102 0.898
40 H 0.051 0.949
41 H 0.081 0.919
42 H 0.161 0.839
43 H 0.161 0.839
44 H 0.093 0.907
45 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 31.393 -16.117 1.180 35.308
hybrid contribution -0.775 0.369 0.956 1.285
sum 30.618 -15.748 2.136 34.497
Atomic orbital electron populations
1.70078 1.08357 1.28159 1.52621 1.26039 0.95632 1.03635 0.94114
0.85644 0.79588 0.78116 0.79230 1.19183 1.21141 1.16681 1.21482
0.92075 0.93209 1.50466 0.94806 1.19454 0.93930 0.94217 0.97203
1.21530 0.92034 0.98545 1.02204 1.21541 0.94503 0.80898 1.02708
1.45896 1.06327 1.10673 1.71337 1.20102 0.83611 0.89394 0.78406
1.90728 1.55325 1.46010 1.49266 1.19816 0.82495 0.89118 0.78486
1.90756 1.55145 1.46220 1.50541 1.48406 1.04189 1.10634 1.69031
1.22348 0.86224 0.90399 1.03098 1.22795 0.94877 0.94405 1.03581
1.22291 0.92234 0.95443 1.00908 0.89062 1.21433 0.98900 0.92125
1.01024 1.21848 0.96780 0.91964 0.96921 1.58695 1.07521 1.06195
1.66999 1.22630 0.94104 0.83020 1.02128 0.92524 0.95593 0.95735
0.91895 0.91893 0.90837 0.90883 0.74611 0.91050 0.90926 0.89093
0.87616 0.91060 0.89813 0.94936 0.91872 0.83945 0.83897 0.90708
0.90227
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16
2 C 0.00 0.15 5.47 84.65 0.46 0.61 16
3 Si 0.95 43.96 27.47 68.60 1.88 45.85 16
4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
5 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16
6 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16
7 C -0.53 -30.54 9.66 25.60 0.25 -30.29 16
8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16
9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16
10 C -0.11 -3.85 5.27 30.60 0.16 -3.68 16
11 C 0.13 3.89 5.67 86.38 0.49 4.38 16
12 N -0.69 -19.70 5.55 -464.42 -2.58 -22.28 16
13 C 0.50 14.56 7.86 87.27 0.69 15.25 16
14 O -0.54 -16.67 14.12 -3.26 -0.05 -16.71 16
15 C 0.52 14.07 7.91 87.27 0.69 14.76 16
16 O -0.55 -17.18 16.73 -3.24 -0.05 -17.23 16
17 N -0.59 -12.37 3.33 -813.83 -2.71 -15.08 16
18 C 0.10 1.69 5.49 86.73 0.48 2.16 16
19 C -0.12 -1.04 6.42 31.78 0.20 -0.83 16
20 C -0.09 -0.81 2.99 -9.48 -0.03 -0.84 16
21 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16
22 C -0.10 -0.67 4.99 30.60 0.15 -0.51 16
23 C 0.06 0.46 6.69 86.31 0.58 1.04 16
24 N -0.86 -6.89 9.62 -186.71 -1.80 -8.69 16
25 C 0.10 1.58 5.85 86.78 0.51 2.09 16
26 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16
27 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16
28 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16
29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16
30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16
31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16
32 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16
33 H 0.42 11.21 7.94 -92.71 -0.74 10.47 16
34 H 0.07 1.33 7.70 -2.39 -0.02 1.31 16
35 H 0.07 1.34 7.57 -2.39 -0.02 1.33 16
36 H 0.09 0.64 8.04 -2.39 -0.02 0.62 16
37 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16
38 H 0.07 0.61 7.96 -2.39 -0.02 0.60 16
39 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16
40 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16
41 H 0.06 0.67 7.75 -2.39 -0.02 0.65 16
42 H 0.35 1.75 8.99 -89.69 -0.81 0.94 16
43 H 0.35 2.10 9.08 -89.69 -0.81 1.29 16
44 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16
45 H 0.08 1.19 7.90 -2.38 -0.02 1.17 16
Total: -1.00 -71.71 367.03 -1.66 -73.37
By element:
Atomic # 1 Polarization: 17.91 SS G_CDS: -1.41 Total: 16.50 kcal
Atomic # 6 Polarization: -0.95 SS G_CDS: 4.75 Total: 3.79 kcal
Atomic # 7 Polarization: -98.79 SS G_CDS: -6.78 Total: -105.57 kcal
Atomic # 8 Polarization: -33.84 SS G_CDS: -0.10 Total: -33.94 kcal
Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal
Total: -71.71 -1.66 -73.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001338296802.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.195 kcal
(2) G-P(sol) polarization free energy of solvation -71.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.372 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds