Wall clock time and date at job start Tue Mar 31 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 N 1.46502 * 109.46864 * 120.00168 * 2 1 3 5 5 C 1.46499 * 119.99632 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47044 * 269.99880 * 5 4 2 7 7 N 1.46499 * 109.47044 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00001 * 89.99973 * 7 6 5 9 9 C 1.36933 * 120.00319 * 270.00406 * 7 6 5 10 10 H 1.07999 * 120.00171 * 23.04645 * 9 7 6 11 11 C 1.38815 * 120.00233 * 203.04945 * 9 7 6 12 12 N 1.31619 * 119.99854 * 12.91772 * 11 9 7 13 13 Si 1.86802 * 120.00053 * 192.92201 * 11 9 7 14 14 H 1.48500 * 109.47130 * 59.99952 * 13 11 9 15 15 H 1.48500 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47139 * 299.99370 * 13 11 9 17 17 C 1.34771 * 120.00398 * 119.99923 * 4 2 1 18 18 O 1.21279 * 120.00415 * 180.02562 * 17 4 2 19 19 C 1.50707 * 119.99861 * 359.72462 * 17 4 2 20 20 H 1.08998 * 110.43789 * 59.57088 * 19 17 4 21 21 C 1.54624 * 110.48739 * 182.12059 * 19 17 4 22 22 C 1.54683 * 101.67299 * 143.39198 * 21 19 17 23 23 N 1.46766 * 105.53318 * 334.73546 * 22 21 19 24 24 C 1.34418 * 111.29639 * 16.92681 * 23 22 21 25 25 O 1.21286 * 124.93525 * 179.55252 * 24 23 22 26 26 H 1.08998 * 109.47291 * 300.00627 * 1 2 3 27 27 H 1.09001 * 109.46445 * 60.00362 * 1 2 3 28 28 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47065 * 239.99860 * 2 1 3 30 30 H 1.08996 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46584 * 299.99954 * 3 2 1 32 32 H 1.08997 * 109.46664 * 59.99624 * 3 2 1 33 33 H 1.08996 * 109.47422 * 30.00041 * 5 4 2 34 34 H 1.08999 * 109.47119 * 150.00231 * 5 4 2 35 35 H 1.08996 * 109.47142 * 300.00332 * 6 5 4 36 36 H 1.08999 * 109.46876 * 60.00202 * 6 5 4 37 37 H 1.09004 * 109.47056 * 95.11918 * 8 7 6 38 38 H 1.08998 * 109.47197 * 215.11930 * 8 7 6 39 39 H 1.09003 * 109.47050 * 335.12672 * 8 7 6 40 40 H 0.97002 * 119.99983 * 180.02562 * 12 11 9 41 41 H 1.09007 * 110.96602 * 261.59685 * 21 19 17 42 42 H 1.09004 * 110.96980 * 25.34887 * 21 19 17 43 43 H 1.09000 * 110.29801 * 215.67452 * 22 21 19 44 44 H 1.08999 * 110.21479 * 93.75553 * 22 21 19 45 45 H 0.96998 * 124.34957 * 196.89992 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5267 6 6 2.7190 0.8169 2.9900 7 7 2.3647 1.3180 4.3202 8 6 2.8525 0.6277 5.5168 9 6 1.5776 2.4315 4.4453 10 1 0.9229 2.7235 3.6375 11 6 1.6212 3.1850 5.6103 12 7 2.5857 2.9901 6.4844 13 14 0.3109 4.4757 5.9374 14 1 -1.0239 3.8263 5.9799 15 1 0.5811 5.1364 7.2395 16 1 0.3337 5.4900 4.8531 17 6 2.7931 -1.7865 1.0726 18 8 3.1969 -2.3585 2.0629 19 6 3.1521 -2.3050 -0.2961 20 1 3.6894 -1.5443 -0.8625 21 6 3.9991 -3.5936 -0.1817 22 6 3.4764 -4.4191 -1.3808 23 7 2.1166 -3.9280 -1.6333 24 6 1.9089 -2.7396 -1.0405 25 8 0.8752 -2.1075 -1.0950 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.6904 0.2974 2.4843 34 1 1.6237 -1.0226 3.2291 35 1 3.6929 0.3294 3.0324 36 1 2.7597 1.6494 2.2875 37 1 3.7661 1.1084 5.8666 38 1 2.0944 0.6759 6.2985 39 1 3.0600 -0.4149 5.2756 40 1 2.6159 3.5164 7.2987 41 1 5.0611 -3.3732 -0.2903 42 1 3.8031 -4.1068 0.7598 43 1 3.4538 -5.4794 -1.1288 44 1 4.1058 -4.2533 -2.2552 45 1 1.4533 -4.4001 -2.1605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486372438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:45 Heat of formation + Delta-G solvation = -29.070038 kcal Electronic energy + Delta-G solvation = -25825.126997 eV Core-core repulsion = 22265.235686 eV Total energy + Delta-G solvation = -3559.891311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.23851 -38.98489 -37.20780 -36.12194 -35.22385 -32.14221 -31.60158 -30.89432 -28.79411 -27.55747 -26.78827 -25.72549 -23.80500 -22.25104 -22.03141 -21.02030 -20.26159 -18.35422 -17.65798 -17.56787 -16.75255 -16.48173 -15.62976 -15.09338 -14.64332 -14.58000 -14.15874 -13.97525 -13.83982 -13.52622 -13.24578 -12.99934 -12.94389 -12.58612 -12.47242 -12.23245 -11.96143 -11.81080 -11.67818 -11.38308 -11.18374 -10.89208 -10.78596 -10.74217 -10.56772 -10.43987 -10.09274 -9.87790 -9.80767 -9.63127 -9.57868 -9.36685 -8.58469 -8.26364 -6.63287 -5.64133 -3.11530 2.19414 2.71049 3.08858 3.30806 3.43168 3.48423 3.49606 4.05141 4.09700 4.49195 4.57492 4.68481 4.83917 5.05332 5.11551 5.19828 5.41630 5.50453 5.54753 5.58874 5.77045 5.83333 5.85749 5.91592 6.01262 6.13621 6.19411 6.28772 6.37237 6.44648 6.47075 6.53994 6.68919 6.83738 6.87408 6.97825 7.10290 7.49163 7.76045 7.82542 7.88007 7.97382 8.38706 8.48813 9.31628 9.95537 10.45819 11.40225 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.003999 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.001222 B = 7000.352833 C = 7708.990634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 C -0.173 4.173 4 N -0.586 5.586 5 C 0.092 3.908 6 C 0.139 3.861 7 N -0.599 5.599 8 C 0.162 3.838 9 C -0.255 4.255 10 H 0.066 0.934 11 C 0.002 3.998 12 N -0.907 5.907 13 Si 0.903 3.097 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.283 1.283 17 C 0.525 3.475 18 O -0.536 6.536 19 C -0.152 4.152 20 H 0.132 0.868 21 C -0.118 4.118 22 C 0.099 3.901 23 N -0.730 5.730 24 C 0.524 3.476 25 O -0.505 6.505 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.030 0.970 38 H 0.039 0.961 39 H 0.000 1.000 40 H 0.252 0.748 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 -13.704 -19.526 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.032 3.968 3 C -0.231 4.231 4 N -0.317 5.317 5 C -0.032 4.032 6 C 0.011 3.989 7 N -0.323 5.323 8 C 0.018 3.982 9 C -0.385 4.385 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.552 5.552 13 Si 0.733 3.267 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.210 1.210 17 C 0.310 3.690 18 O -0.414 6.414 19 C -0.176 4.176 20 H 0.150 0.850 21 C -0.156 4.156 22 C -0.025 4.025 23 N -0.386 5.386 24 C 0.309 3.691 25 O -0.380 6.380 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.806 -13.488 -18.747 23.165 hybrid contribution -0.914 0.570 -0.068 1.080 sum 0.891 -12.918 -18.814 22.839 Atomic orbital electron populations 1.22061 0.94574 1.02897 1.01017 1.21366 0.95411 0.92461 0.87587 1.22413 1.01260 0.96499 1.02914 1.48101 1.48710 1.26765 1.08163 1.22490 1.00760 0.98873 0.81070 1.21182 0.94463 0.94952 0.88328 1.43835 1.59323 1.29649 0.99443 1.20794 0.98856 0.90255 0.88313 1.19126 1.15485 1.01980 1.01895 0.91580 1.25014 0.97726 0.98192 0.98653 1.70074 1.31197 1.42494 1.11409 0.86359 0.81642 0.81455 0.77211 1.21117 1.21678 1.20964 1.19670 0.79144 0.80819 0.89388 1.90705 1.53850 1.58096 1.38730 1.22157 0.97533 1.00866 0.97084 0.85034 1.22651 1.00133 0.93252 0.99599 1.22188 0.82617 0.99414 0.98318 1.46160 1.15823 1.22366 1.54254 1.20477 0.88666 0.81228 0.78694 1.90850 1.29474 1.56417 1.61307 0.92977 0.92535 0.90861 0.88719 0.92616 0.92052 0.90815 0.90590 0.90896 0.94630 0.92836 0.95172 0.94222 0.98107 0.93773 0.88567 0.88009 0.89929 0.90789 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.27 37.16 0.31 -1.81 16 2 C 0.14 1.90 2.22 -67.93 -0.15 1.75 16 3 C -0.17 -2.36 8.14 37.16 0.30 -2.06 16 4 N -0.59 -9.62 2.39 -166.10 -0.40 -10.01 16 5 C 0.09 1.82 5.15 -4.04 -0.02 1.80 16 6 C 0.14 3.08 5.69 -4.04 -0.02 3.06 16 7 N -0.60 -15.86 2.92 -181.12 -0.53 -16.39 16 8 C 0.16 4.31 8.98 59.85 0.54 4.84 16 9 C -0.26 -7.18 9.65 -15.06 -0.15 -7.32 16 10 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 11 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 12 N -0.91 -27.23 10.71 55.49 0.59 -26.64 16 13 Si 0.90 22.28 29.57 -169.99 -5.03 17.25 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 C 0.52 8.33 7.07 -10.98 -0.08 8.25 16 18 O -0.54 -10.30 15.08 5.56 0.08 -10.22 16 19 C -0.15 -1.65 2.40 -91.78 -0.22 -1.87 16 20 H 0.13 1.16 7.78 -51.93 -0.40 0.75 16 21 C -0.12 -0.96 6.48 -24.99 -0.16 -1.13 16 22 C 0.10 0.53 7.79 -3.01 -0.02 0.51 16 23 N -0.73 -5.49 6.24 -59.09 -0.37 -5.86 16 24 C 0.52 5.80 7.35 -10.86 -0.08 5.72 16 25 O -0.50 -6.93 11.52 5.55 0.06 -6.86 16 26 H 0.05 0.80 6.66 -51.93 -0.35 0.45 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.14 6.07 -51.93 -0.32 0.83 16 29 H 0.10 1.21 4.13 -51.93 -0.21 1.00 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 33 H 0.08 1.52 6.43 -51.93 -0.33 1.19 16 34 H 0.07 1.59 7.42 -51.93 -0.39 1.20 16 35 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.05 1.15 5.34 -51.93 -0.28 0.88 16 37 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 38 H 0.04 1.10 7.34 -51.93 -0.38 0.72 16 39 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 1.06 7.02 -51.93 -0.36 0.69 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.41 2.40 8.96 -40.82 -0.37 2.03 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -34.15 345.83 -7.22 -41.37 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.01 Total: 0.43 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 0.16 Total: 11.72 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.70 Total: -58.90 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.15 Total: -17.08 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.15 -7.22 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486372438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.297 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds