Wall clock time and date at job start Tue Mar 31 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47456 * 2 1 4 4 N 1.46502 * 109.46864 * 120.00168 * 2 1 3 5 5 C 1.46499 * 119.99632 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47044 * 269.99880 * 5 4 2 7 7 N 1.46499 * 109.47044 * 179.97438 * 6 5 4 8 8 C 1.46503 * 120.00001 * 89.99973 * 7 6 5 9 9 C 1.36933 * 120.00319 * 270.00406 * 7 6 5 10 10 H 1.07999 * 120.00171 * 23.04645 * 9 7 6 11 11 C 1.38815 * 120.00233 * 203.04945 * 9 7 6 12 12 N 1.31619 * 119.99854 * 12.91772 * 11 9 7 13 13 Si 1.86802 * 120.00053 * 192.92201 * 11 9 7 14 14 H 1.48500 * 109.47130 * 59.99952 * 13 11 9 15 15 H 1.48500 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47139 * 299.99370 * 13 11 9 17 17 C 1.34771 * 120.00398 * 119.99923 * 4 2 1 18 18 O 1.21279 * 120.00415 * 180.02562 * 17 4 2 19 19 C 1.50707 * 119.99861 * 359.72462 * 17 4 2 20 20 H 1.08998 * 110.43789 * 59.57088 * 19 17 4 21 21 C 1.54624 * 110.48739 * 182.12059 * 19 17 4 22 22 C 1.54683 * 101.67299 * 143.39198 * 21 19 17 23 23 N 1.46766 * 105.53318 * 334.73546 * 22 21 19 24 24 C 1.34418 * 111.29639 * 16.92681 * 23 22 21 25 25 O 1.21286 * 124.93525 * 179.55252 * 24 23 22 26 26 H 1.08998 * 109.47291 * 300.00627 * 1 2 3 27 27 H 1.09001 * 109.46445 * 60.00362 * 1 2 3 28 28 H 1.08999 * 109.47239 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47065 * 239.99860 * 2 1 3 30 30 H 1.08996 * 109.47194 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46584 * 299.99954 * 3 2 1 32 32 H 1.08997 * 109.46664 * 59.99624 * 3 2 1 33 33 H 1.08996 * 109.47422 * 30.00041 * 5 4 2 34 34 H 1.08999 * 109.47119 * 150.00231 * 5 4 2 35 35 H 1.08996 * 109.47142 * 300.00332 * 6 5 4 36 36 H 1.08999 * 109.46876 * 60.00202 * 6 5 4 37 37 H 1.09004 * 109.47056 * 95.11918 * 8 7 6 38 38 H 1.08998 * 109.47197 * 215.11930 * 8 7 6 39 39 H 1.09003 * 109.47050 * 335.12672 * 8 7 6 40 40 H 0.97002 * 119.99983 * 180.02562 * 12 11 9 41 41 H 1.09007 * 110.96602 * 261.59685 * 21 19 17 42 42 H 1.09004 * 110.96980 * 25.34887 * 21 19 17 43 43 H 1.09000 * 110.29801 * 215.67452 * 22 21 19 44 44 H 1.08999 * 110.21479 * 93.75553 * 22 21 19 45 45 H 0.96998 * 124.34957 * 196.89992 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6643 -0.1901 2.5267 6 6 2.7190 0.8169 2.9900 7 7 2.3647 1.3180 4.3202 8 6 2.8525 0.6277 5.5168 9 6 1.5776 2.4315 4.4453 10 1 0.9229 2.7235 3.6375 11 6 1.6212 3.1850 5.6103 12 7 2.5857 2.9901 6.4844 13 14 0.3109 4.4757 5.9374 14 1 -1.0239 3.8263 5.9799 15 1 0.5811 5.1364 7.2395 16 1 0.3337 5.4900 4.8531 17 6 2.7931 -1.7865 1.0726 18 8 3.1969 -2.3585 2.0629 19 6 3.1521 -2.3050 -0.2961 20 1 3.6894 -1.5443 -0.8625 21 6 3.9991 -3.5936 -0.1817 22 6 3.4764 -4.4191 -1.3808 23 7 2.1166 -3.9280 -1.6333 24 6 1.9089 -2.7396 -1.0405 25 8 0.8752 -2.1075 -1.0950 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.6904 0.2974 2.4843 34 1 1.6237 -1.0226 3.2291 35 1 3.6929 0.3294 3.0324 36 1 2.7597 1.6494 2.2875 37 1 3.7661 1.1084 5.8666 38 1 2.0944 0.6759 6.2985 39 1 3.0600 -0.4149 5.2756 40 1 2.6159 3.5164 7.2987 41 1 5.0611 -3.3732 -0.2903 42 1 3.8031 -4.1068 0.7598 43 1 3.4538 -5.4794 -1.1288 44 1 4.1058 -4.2533 -2.2552 45 1 1.4533 -4.4001 -2.1605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486372438.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:45 Heat of formation + Delta-G solvation = -53.331953 kcal Electronic energy + Delta-G solvation = -25826.179073 eV Core-core repulsion = 22265.235686 eV Total energy + Delta-G solvation = -3560.943387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20076 -40.11829 -38.37895 -37.45842 -36.82419 -33.80061 -32.59741 -32.48359 -30.13938 -28.68553 -27.92206 -27.88744 -25.44991 -23.46415 -22.85130 -22.36228 -21.77790 -19.49899 -18.90464 -18.53314 -18.33299 -17.61520 -17.09882 -16.64105 -16.07389 -15.67628 -15.41116 -15.26039 -15.03271 -14.88017 -14.56021 -14.52377 -14.13269 -13.99111 -13.82960 -13.39985 -13.23936 -13.12239 -12.82817 -12.77691 -12.75169 -12.59271 -12.46295 -12.15131 -12.12442 -11.99139 -11.91268 -11.71912 -11.43113 -10.95370 -10.72471 -10.66582 -10.01268 -9.76716 -8.76092 -7.82502 -5.33812 1.27364 1.46156 1.49815 1.56022 1.60830 2.02145 2.45930 2.52332 3.25654 3.28862 3.31150 3.66393 3.75452 3.97683 4.04213 4.12579 4.21887 4.26295 4.45382 4.51737 4.57409 4.62470 4.73287 4.80486 4.82262 4.84044 4.91049 5.02936 5.06386 5.10934 5.12013 5.20632 5.25637 5.43075 5.47176 5.58430 5.63458 5.64986 5.79432 6.07041 6.31004 6.48117 7.10543 7.13722 7.23491 7.82734 8.30252 9.21030 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025968 B = 0.003999 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.001222 B = 7000.352833 C = 7708.990634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.136 3.864 3 C -0.168 4.168 4 N -0.589 5.589 5 C 0.113 3.887 6 C 0.147 3.853 7 N -0.616 5.616 8 C 0.180 3.820 9 C -0.265 4.265 10 H 0.074 0.926 11 C -0.052 4.052 12 N -0.940 5.940 13 Si 0.972 3.028 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.271 1.271 17 C 0.516 3.484 18 O -0.577 6.577 19 C -0.148 4.148 20 H 0.158 0.842 21 C -0.117 4.117 22 C 0.104 3.896 23 N -0.716 5.716 24 C 0.517 3.483 25 O -0.538 6.538 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.007 0.993 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.249 0.751 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.066 -14.215 -22.553 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.034 3.966 3 C -0.226 4.226 4 N -0.320 5.320 5 C -0.012 4.012 6 C 0.020 3.980 7 N -0.340 5.340 8 C 0.035 3.965 9 C -0.395 4.395 10 H 0.092 0.908 11 C -0.247 4.247 12 N -0.587 5.587 13 Si 0.799 3.201 14 H -0.205 1.205 15 H -0.220 1.220 16 H -0.197 1.197 17 C 0.304 3.696 18 O -0.457 6.457 19 C -0.172 4.172 20 H 0.176 0.824 21 C -0.155 4.155 22 C -0.020 4.020 23 N -0.372 5.372 24 C 0.302 3.698 25 O -0.417 6.417 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.025 0.975 38 H 0.036 0.964 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.853 -14.047 -21.853 26.045 hybrid contribution -0.882 0.632 0.815 1.356 sum 0.971 -13.416 -21.039 24.971 Atomic orbital electron populations 1.21995 0.94795 1.02049 1.01053 1.21551 0.95218 0.92701 0.87093 1.22372 1.01485 0.96000 1.02776 1.48165 1.49073 1.27369 1.07407 1.21878 0.99504 0.97082 0.82776 1.21225 0.94638 0.95502 0.86651 1.44069 1.59456 1.29701 1.00772 1.20495 0.96994 0.90890 0.88129 1.19484 1.15625 1.02155 1.02205 0.90829 1.25848 0.99792 1.00565 0.98537 1.70247 1.32971 1.43722 1.11726 0.85278 0.78896 0.78941 0.76951 1.20529 1.22029 1.19657 1.20581 0.77904 0.79945 0.91198 1.90683 1.55171 1.59058 1.40784 1.22219 0.98441 1.02706 0.93847 0.82431 1.22709 1.01183 0.91939 0.99719 1.22396 0.81491 0.99851 0.98218 1.46148 1.17007 1.20999 1.53006 1.20526 0.88125 0.82131 0.79045 1.90829 1.30420 1.57692 1.62717 0.94697 0.90617 0.92150 0.86578 0.92209 0.89444 0.93598 0.91121 0.93448 0.95492 0.92025 0.97485 0.96355 0.96460 0.94217 0.86303 0.90713 0.87926 0.87497 0.73692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.27 71.98 0.60 -3.34 16 2 C 0.14 3.66 2.22 44.99 0.10 3.76 16 3 C -0.17 -4.32 8.14 71.98 0.59 -3.74 16 4 N -0.59 -19.29 2.39 -797.82 -1.90 -21.20 16 5 C 0.11 4.58 5.15 86.38 0.44 5.02 16 6 C 0.15 6.63 5.69 86.38 0.49 7.12 16 7 N -0.62 -33.40 2.92 -726.92 -2.12 -35.53 16 8 C 0.18 9.89 8.98 127.77 1.15 11.04 16 9 C -0.26 -15.06 9.65 84.03 0.81 -14.25 16 10 H 0.07 3.99 7.86 -2.91 -0.02 3.97 16 11 C -0.05 -3.03 5.10 84.86 0.43 -2.60 16 12 N -0.94 -57.74 10.71 21.65 0.23 -57.51 16 13 Si 0.97 46.10 29.57 68.60 2.03 48.13 16 14 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 15 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 C 0.52 16.23 7.07 87.66 0.62 16.85 16 18 O -0.58 -22.63 15.08 -3.03 -0.05 -22.68 16 19 C -0.15 -2.90 2.40 -11.55 -0.03 -2.92 16 20 H 0.16 2.23 7.78 -2.39 -0.02 2.22 16 21 C -0.12 -1.62 6.48 31.72 0.21 -1.41 16 22 C 0.10 0.70 7.79 86.90 0.68 1.38 16 23 N -0.72 -8.51 6.24 -459.45 -2.87 -11.38 16 24 C 0.52 10.29 7.35 87.90 0.65 10.93 16 25 O -0.54 -13.92 11.52 -3.05 -0.04 -13.95 16 26 H 0.03 1.06 6.66 -2.39 -0.02 1.05 16 27 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 1.86 6.07 -2.39 -0.01 1.85 16 29 H 0.12 2.69 4.13 -2.39 -0.01 2.68 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.44 6.17 -2.39 -0.01 1.42 16 33 H 0.07 2.92 6.43 -2.39 -0.02 2.90 16 34 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 35 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 36 H 0.06 2.68 5.34 -2.39 -0.01 2.66 16 37 H 0.01 0.41 7.34 -2.39 -0.02 0.39 16 38 H 0.02 1.04 7.34 -2.39 -0.02 1.02 16 39 H 0.02 0.85 8.03 -2.39 -0.02 0.84 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.07 1.49 7.02 -2.38 -0.02 1.47 16 43 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.42 3.60 8.96 -92.71 -0.83 2.77 16 Total: -1.00 -76.32 345.83 2.18 -74.14 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.17 Total: 12.14 kcal Atomic # 6 Polarization: 21.10 SS G_CDS: 6.73 Total: 27.83 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.66 Total: -125.61 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -0.08 Total: -36.63 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.32 2.18 -74.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486372438.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.808 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds