Wall clock time and date at job start Tue Mar 31 2020 03:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.50697 * 109.47431 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99626 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00066 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00059 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 C 1.53781 * 113.61609 * 175.00005 * 8 7 6 10 10 C 1.53781 * 87.08070 * 139.98229 * 9 8 7 11 11 N 1.46900 * 113.61428 * 219.93557 * 10 9 8 12 12 C 1.46895 * 110.99924 * 203.46824 * 11 10 9 13 13 C 1.50700 * 109.47106 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00101 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00188 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00693 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99366 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00595 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99765 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00044 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46971 * 90.00384 * 20 18 16 22 22 H 1.48500 * 109.47214 * 210.00448 * 20 18 16 23 23 H 1.48501 * 109.46973 * 330.00376 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 10 9 8 25 25 H 1.09000 * 109.46833 * 299.99650 * 1 2 3 26 26 H 1.08997 * 109.47355 * 59.99617 * 1 2 3 27 27 H 1.08999 * 109.46613 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47148 * 240.00687 * 2 1 3 29 29 H 1.08995 * 109.47298 * 119.99834 * 2 1 3 30 30 H 1.09005 * 109.47358 * 59.99831 * 3 2 1 31 31 H 1.09006 * 109.47182 * 300.00516 * 3 2 1 32 32 H 0.96996 * 120.00586 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47114 * 60.00231 * 7 6 4 34 34 H 1.09006 * 109.47306 * 300.00712 * 7 6 4 35 35 H 1.08996 * 112.84723 * 43.80825 * 8 7 6 36 36 H 1.08999 * 113.61181 * 25.43284 * 9 8 7 37 37 H 1.08998 * 113.61680 * 254.52836 * 9 8 7 38 38 H 1.09002 * 113.61445 * 89.11830 * 10 9 8 39 39 H 1.00902 * 110.99925 * 79.51829 * 11 10 9 40 40 H 1.08994 * 109.47448 * 300.00310 * 12 11 10 41 41 H 1.09001 * 109.47145 * 60.00387 * 12 11 10 42 42 H 0.97006 * 119.99894 * 359.97438 * 15 13 12 43 43 H 0.97003 * 119.99901 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 10 9 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0015 6 7 4.2208 2.6098 -0.0013 7 6 5.6858 2.6099 -0.0025 8 6 6.1958 4.0524 -0.0023 9 6 7.7246 4.1653 0.1193 10 6 7.6437 5.3038 -0.9114 11 7 8.7306 5.2814 -1.8994 12 6 8.9438 6.6148 -2.4777 13 6 10.0632 6.5525 -3.4848 14 8 10.6275 5.5006 -3.7000 15 7 10.4373 7.6655 -4.1463 16 6 11.4552 7.6087 -5.0629 17 1 11.9576 6.6721 -5.2545 18 6 11.8405 8.7561 -5.7453 19 7 12.8166 8.7016 -6.6235 20 14 10.9711 10.3760 -5.4145 21 1 11.6658 11.0954 -4.3167 22 1 10.9921 11.2092 -6.6435 23 1 9.5641 10.1110 -5.0201 24 6 6.3423 4.6554 -1.4123 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7358 3.4499 -0.0009 33 1 6.0484 2.0961 -0.8927 34 1 6.0499 2.0960 0.8872 35 1 5.6540 4.6928 0.6937 36 1 8.2575 3.2860 -0.2424 37 1 8.0615 4.4906 1.1035 38 1 7.4978 6.2874 -0.4649 39 1 8.5497 4.5993 -2.6205 40 1 8.0303 6.9475 -2.9704 41 1 9.2058 7.3166 -1.6858 42 1 9.9858 8.5067 -3.9745 43 1 13.0854 9.5026 -7.1002 44 1 5.5641 5.3759 -1.6637 45 1 6.4981 3.9098 -2.1920 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489374459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:39 Heat of formation + Delta-G solvation = -66.260881 kcal Electronic energy + Delta-G solvation = -22905.438972 eV Core-core repulsion = 19343.934945 eV Total energy + Delta-G solvation = -3561.504027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25565 -39.34797 -38.23586 -35.28919 -34.67428 -34.09242 -33.26133 -31.65180 -29.38273 -27.59464 -26.20022 -25.81836 -23.87859 -22.40177 -21.55814 -20.73626 -19.85857 -19.27129 -18.27929 -17.36453 -16.49814 -16.31034 -16.02678 -15.68937 -15.32497 -14.83956 -14.77427 -14.37645 -14.24204 -13.87232 -13.52259 -13.48282 -13.05129 -12.71648 -12.59405 -12.50275 -12.38907 -12.22764 -12.13648 -11.83498 -11.67017 -11.59220 -11.19393 -11.15072 -11.11385 -10.74568 -10.60912 -10.52963 -10.05213 -9.97507 -9.57842 -9.34895 -8.58064 -8.19197 -8.09025 -6.31394 -3.82857 2.36205 2.86814 3.01178 3.05985 3.14063 3.73751 4.07299 4.10666 4.27248 4.33089 4.42900 4.52135 4.58215 4.60696 4.74263 4.91103 4.99431 5.04756 5.06231 5.18170 5.19970 5.22707 5.32344 5.43536 5.54684 5.61088 5.62634 5.64717 5.67668 5.74302 5.75960 5.88146 5.91049 5.92639 5.97918 6.13354 6.24249 7.15396 7.17613 7.57025 7.59110 7.93457 8.14455 8.59514 8.94794 9.42140 9.82571 10.81775 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031655 B = 0.001972 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.336457 B =14193.656694 C =14361.669286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.508 3.492 5 O -0.541 6.541 6 N -0.731 5.731 7 C 0.129 3.871 8 C -0.124 4.124 9 C -0.116 4.116 10 C 0.068 3.932 11 N -0.657 5.657 12 C 0.048 3.952 13 C 0.449 3.551 14 O -0.565 6.565 15 N -0.591 5.591 16 C -0.306 4.306 17 H 0.119 0.881 18 C 0.041 3.959 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.166 4.166 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.400 0.600 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.353 0.647 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.066 0.934 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.043 -6.935 15.968 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.294 3.706 5 O -0.418 6.418 6 N -0.383 5.383 7 C 0.006 3.994 8 C -0.144 4.144 9 C -0.155 4.155 10 C -0.043 4.043 11 N -0.289 5.289 12 C -0.085 4.085 13 C 0.234 3.766 14 O -0.446 6.446 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.162 4.162 19 N -0.521 5.521 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.205 4.205 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.234 0.766 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.174 0.826 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.532 -8.230 16.100 29.677 hybrid contribution -1.577 2.072 -0.479 2.648 sum -25.109 -6.158 15.621 30.206 Atomic orbital electron populations 1.21797 0.95452 1.02042 1.01761 1.21285 0.95269 0.94652 1.03632 1.21731 0.91747 1.00310 1.04330 1.20807 0.90398 0.83612 0.75752 1.90721 1.70596 1.31343 1.49142 1.46085 1.07702 1.08639 1.75846 1.21391 0.79060 0.96424 1.02518 1.22708 0.98050 0.95263 0.98332 1.23050 0.93163 0.99743 0.99577 1.22999 0.88438 0.98397 0.94438 1.60002 1.42991 1.06597 1.19280 1.21741 0.97166 0.92108 0.97487 1.19752 0.87071 0.84872 0.84857 1.90570 1.57090 1.29548 1.67436 1.42210 1.33714 1.08916 1.38195 1.19441 1.09928 0.99090 1.14966 0.86289 1.25039 0.96685 0.98049 0.96397 1.69624 1.27572 1.29649 1.25281 0.86662 0.79618 0.84121 0.78909 1.19602 1.20197 1.19570 1.23904 0.99526 1.00577 0.96508 0.92708 0.92657 0.92356 0.91190 0.91253 0.88988 0.88924 0.76629 0.91159 0.91367 0.88742 0.89058 0.91023 0.88601 0.82605 0.93783 0.89519 0.79714 0.91620 0.91557 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.11 -0.74 5.22 -26.73 -0.14 -0.88 16 3 C -0.14 -0.81 5.70 -27.88 -0.16 -0.96 16 4 C 0.51 4.68 7.83 -10.99 -0.09 4.59 16 5 O -0.54 -7.43 15.98 5.56 0.09 -7.34 16 6 N -0.73 -5.31 5.56 -60.29 -0.33 -5.64 16 7 C 0.13 1.11 5.51 -4.04 -0.02 1.09 16 8 C -0.12 -0.92 3.76 -89.67 -0.34 -1.25 16 9 C -0.12 -1.10 7.44 -25.92 -0.19 -1.29 16 10 C 0.07 0.73 4.16 -66.90 -0.28 0.45 16 11 N -0.66 -9.86 6.24 -107.13 -0.67 -10.53 16 12 C 0.05 0.77 6.02 -4.98 -0.03 0.74 16 13 C 0.45 10.17 7.82 -10.99 -0.09 10.09 16 14 O -0.56 -15.26 15.78 5.55 0.09 -15.17 16 15 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 16 C -0.31 -8.68 10.16 -14.93 -0.15 -8.83 16 17 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 20 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 24 C -0.17 -1.44 7.27 -25.77 -0.19 -1.63 16 25 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 1.78 8.47 -40.82 -0.35 1.44 16 33 H 0.07 0.72 7.85 -51.93 -0.41 0.32 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.93 7.88 -51.93 -0.41 0.52 16 39 H 0.35 5.57 7.91 -39.29 -0.31 5.26 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 42 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.85 7.59 -51.93 -0.39 0.45 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -34.95 372.39 -8.18 -43.13 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -7.57 Total: 11.74 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.40 Total: 2.77 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.28 Total: -55.31 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.18 Total: -22.51 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.95 -8.18 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489374459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.135 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds