Wall clock time and date at job start Tue Mar 31 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.50697 * 109.47431 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99626 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00066 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00059 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47425 * 180.02562 * 7 6 4 9 9 C 1.53781 * 113.61609 * 175.00005 * 8 7 6 10 10 C 1.53781 * 87.08070 * 139.98229 * 9 8 7 11 11 N 1.46900 * 113.61428 * 219.93557 * 10 9 8 12 12 C 1.46895 * 110.99924 * 203.46824 * 11 10 9 13 13 C 1.50700 * 109.47106 * 180.02562 * 12 11 10 14 14 O 1.21294 * 120.00101 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00188 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00693 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99366 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00595 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99765 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00044 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46971 * 90.00384 * 20 18 16 22 22 H 1.48500 * 109.47214 * 210.00448 * 20 18 16 23 23 H 1.48501 * 109.46973 * 330.00376 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 10 9 8 25 25 H 1.09000 * 109.46833 * 299.99650 * 1 2 3 26 26 H 1.08997 * 109.47355 * 59.99617 * 1 2 3 27 27 H 1.08999 * 109.46613 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47148 * 240.00687 * 2 1 3 29 29 H 1.08995 * 109.47298 * 119.99834 * 2 1 3 30 30 H 1.09005 * 109.47358 * 59.99831 * 3 2 1 31 31 H 1.09006 * 109.47182 * 300.00516 * 3 2 1 32 32 H 0.96996 * 120.00586 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47114 * 60.00231 * 7 6 4 34 34 H 1.09006 * 109.47306 * 300.00712 * 7 6 4 35 35 H 1.08996 * 112.84723 * 43.80825 * 8 7 6 36 36 H 1.08999 * 113.61181 * 25.43284 * 9 8 7 37 37 H 1.08998 * 113.61680 * 254.52836 * 9 8 7 38 38 H 1.09002 * 113.61445 * 89.11830 * 10 9 8 39 39 H 1.00902 * 110.99925 * 79.51829 * 11 10 9 40 40 H 1.08994 * 109.47448 * 300.00310 * 12 11 10 41 41 H 1.09001 * 109.47145 * 60.00387 * 12 11 10 42 42 H 0.97006 * 119.99894 * 359.97438 * 15 13 12 43 43 H 0.97003 * 119.99901 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 10 9 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 8 4.1534 0.3923 -0.0015 6 7 4.2208 2.6098 -0.0013 7 6 5.6858 2.6099 -0.0025 8 6 6.1958 4.0524 -0.0023 9 6 7.7246 4.1653 0.1193 10 6 7.6437 5.3038 -0.9114 11 7 8.7306 5.2814 -1.8994 12 6 8.9438 6.6148 -2.4777 13 6 10.0632 6.5525 -3.4848 14 8 10.6275 5.5006 -3.7000 15 7 10.4373 7.6655 -4.1463 16 6 11.4552 7.6087 -5.0629 17 1 11.9576 6.6721 -5.2545 18 6 11.8405 8.7561 -5.7453 19 7 12.8166 8.7016 -6.6235 20 14 10.9711 10.3760 -5.4145 21 1 11.6658 11.0954 -4.3167 22 1 10.9921 11.2092 -6.6435 23 1 9.5641 10.1110 -5.0201 24 6 6.3423 4.6554 -1.4123 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7358 3.4499 -0.0009 33 1 6.0484 2.0961 -0.8927 34 1 6.0499 2.0960 0.8872 35 1 5.6540 4.6928 0.6937 36 1 8.2575 3.2860 -0.2424 37 1 8.0615 4.4906 1.1035 38 1 7.4978 6.2874 -0.4649 39 1 8.5497 4.5993 -2.6205 40 1 8.0303 6.9475 -2.9704 41 1 9.2058 7.3166 -1.6858 42 1 9.9858 8.5067 -3.9745 43 1 13.0854 9.5026 -7.1002 44 1 5.5641 5.3759 -1.6637 45 1 6.4981 3.9098 -2.1920 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489374459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:38 Heat of formation + Delta-G solvation = -94.610112 kcal Electronic energy + Delta-G solvation = -22906.668286 eV Core-core repulsion = 19343.934945 eV Total energy + Delta-G solvation = -3562.733342 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01142 -40.41919 -39.76713 -36.27930 -35.85582 -35.24772 -34.42280 -33.72240 -30.09901 -28.64390 -27.34162 -26.53931 -25.53019 -23.02684 -22.31353 -21.46951 -21.28667 -20.60918 -20.01636 -18.06904 -17.69358 -17.11276 -17.00940 -16.90787 -16.49341 -16.28697 -15.65662 -15.54388 -15.28532 -14.91298 -14.81097 -14.50097 -14.10125 -14.03778 -13.95954 -13.59705 -13.33152 -13.02598 -12.93945 -12.80622 -12.68017 -12.58828 -12.41253 -12.03497 -11.98738 -11.87078 -11.63157 -11.52640 -11.49817 -11.26895 -10.81000 -10.41934 -10.25199 -10.06733 -9.20123 -8.41490 -6.02903 1.30183 1.36524 1.45357 1.66827 1.95841 2.23483 2.25043 2.77129 3.14804 3.41588 3.59794 3.64304 3.85885 3.95434 4.03194 4.06587 4.12642 4.19120 4.30514 4.44767 4.48868 4.57313 4.58557 4.70719 4.74655 4.77540 4.86298 4.89611 4.92085 4.95596 5.14686 5.22782 5.25303 5.27817 5.39232 5.45735 5.52276 5.56490 5.92693 6.18669 6.40769 6.59948 6.60031 6.87909 7.30576 7.39591 7.96901 8.76310 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.031655 B = 0.001972 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.336457 B =14193.656694 C =14361.669286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.500 3.500 5 O -0.596 6.596 6 N -0.716 5.716 7 C 0.132 3.868 8 C -0.100 4.100 9 C -0.123 4.123 10 C 0.064 3.936 11 N -0.681 5.681 12 C 0.063 3.937 13 C 0.445 3.555 14 O -0.618 6.618 15 N -0.590 5.590 16 C -0.332 4.332 17 H 0.052 0.948 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.229 1.229 24 C -0.159 4.159 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.418 0.582 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.343 0.657 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.391 0.609 43 H 0.279 0.721 44 H 0.087 0.913 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.003 -3.518 18.061 34.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.172 4.172 4 C 0.288 3.712 5 O -0.477 6.477 6 N -0.369 5.369 7 C 0.007 3.993 8 C -0.119 4.119 9 C -0.162 4.162 10 C -0.046 4.046 11 N -0.312 5.312 12 C -0.069 4.069 13 C 0.233 3.767 14 O -0.503 6.503 15 N -0.232 5.232 16 C -0.461 4.461 17 H 0.070 0.930 18 C -0.215 4.215 19 N -0.576 5.576 20 Si 0.788 3.212 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.152 1.152 24 C -0.198 4.198 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.255 0.745 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.162 0.838 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.539 -4.779 18.224 33.367 hybrid contribution -0.255 0.849 -1.132 1.438 sum -27.794 -3.930 17.092 32.865 Atomic orbital electron populations 1.21757 0.93628 1.02294 1.02820 1.21271 0.96778 0.95262 1.01773 1.21761 0.88772 0.99933 1.06707 1.21528 0.91946 0.83122 0.74557 1.90702 1.71911 1.33362 1.51765 1.45963 1.07118 1.09128 1.74650 1.21246 0.80003 0.97133 1.00878 1.22592 0.96612 0.94508 0.98189 1.23056 0.94695 0.98688 0.99718 1.23212 0.87910 0.99854 0.93579 1.60020 1.45775 1.05815 1.19582 1.21677 0.95260 0.93529 0.96405 1.21140 0.87459 0.83497 0.84592 1.90548 1.59129 1.31628 1.68973 1.42026 1.33051 1.10374 1.37721 1.19014 1.12051 0.97379 1.17667 0.92955 1.26163 0.97193 1.02962 0.95150 1.69814 1.29612 1.31543 1.26596 0.85326 0.80138 0.76656 0.79129 1.18118 1.20039 1.15209 1.23804 0.99012 1.00402 0.96604 0.91420 0.91714 0.92632 0.93371 0.92998 0.86156 0.86613 0.74482 0.93623 0.92481 0.85686 0.91338 0.90050 0.86312 0.83766 0.90377 0.86619 0.77371 0.91135 0.89420 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.11 -1.45 5.22 30.60 0.16 -1.29 16 3 C -0.13 -1.21 5.70 29.85 0.17 -1.04 16 4 C 0.50 8.77 7.83 87.66 0.69 9.45 16 5 O -0.60 -16.99 15.98 -3.04 -0.05 -17.04 16 6 N -0.72 -8.96 5.56 -463.06 -2.57 -11.53 16 7 C 0.13 2.14 5.51 86.38 0.48 2.62 16 8 C -0.10 -1.19 3.76 -10.18 -0.04 -1.23 16 9 C -0.12 -2.10 7.44 31.12 0.23 -1.87 16 10 C 0.06 1.17 4.16 45.44 0.19 1.36 16 11 N -0.68 -19.44 6.24 -492.86 -3.07 -22.51 16 12 C 0.06 1.86 6.02 85.56 0.52 2.38 16 13 C 0.44 20.12 7.82 87.66 0.69 20.81 16 14 O -0.62 -34.89 15.78 -3.07 -0.05 -34.94 16 15 N -0.59 -27.76 5.09 -306.99 -1.56 -29.32 16 16 C -0.33 -19.61 10.16 84.04 0.85 -18.75 16 17 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 18 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 19 N -0.94 -56.65 13.96 21.66 0.30 -56.34 16 20 Si 0.97 38.36 27.74 68.60 1.90 40.26 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 24 C -0.16 -2.30 7.27 31.21 0.23 -2.07 16 25 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.81 8.10 -2.38 -0.02 0.79 16 29 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 30 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.42 2.16 8.47 -92.71 -0.79 1.37 16 33 H 0.05 0.98 7.85 -2.39 -0.02 0.96 16 34 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.12 1.67 7.88 -2.39 -0.02 1.65 16 39 H 0.34 10.87 7.91 -89.69 -0.71 10.16 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.12 2.79 8.13 -2.39 -0.02 2.77 16 42 H 0.39 14.96 5.76 -92.70 -0.53 14.43 16 43 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 1.27 7.59 -2.39 -0.02 1.26 16 Total: -1.00 -85.01 372.39 -0.85 -85.87 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -1.09 Total: 36.08 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.34 Total: 9.47 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -6.91 Total: -119.71 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -0.10 Total: -51.98 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 1.90 Total: 40.26 kcal Total: -85.01 -0.85 -85.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489374459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.744 kcal (2) G-P(sol) polarization free energy of solvation -85.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds