Wall clock time and date at job start Tue Mar 31 2020 03:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99972 * 2 1 4 4 C 1.53001 * 109.46974 * 270.00007 * 3 2 1 5 5 C 1.53004 * 109.47167 * 180.02562 * 4 3 2 6 6 N 1.46893 * 109.46965 * 180.02562 * 5 4 3 7 7 C 1.46901 * 111.00045 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.47313 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00177 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99660 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00365 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99661 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99934 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99869 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47446 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47048 * 120.00144 * 15 13 11 18 18 H 1.48497 * 109.47281 * 239.99727 * 15 13 11 19 19 C 1.34774 * 120.00121 * 179.97438 * 2 1 3 20 20 O 1.21285 * 120.00110 * 176.13734 * 19 2 1 21 21 C 1.50702 * 120.00020 * 356.13752 * 19 2 1 22 22 C 1.53000 * 115.54779 * 68.51992 * 21 19 2 23 23 C 1.52991 * 117.50086 * 282.84913 * 21 19 2 24 24 C 1.53002 * 117.49930 * 214.18684 * 21 19 2 25 25 H 1.09000 * 109.47339 * 95.40728 * 1 2 3 26 26 H 1.09006 * 109.47270 * 215.40948 * 1 2 3 27 27 H 1.08998 * 109.47350 * 335.40433 * 1 2 3 28 28 H 1.08996 * 109.47382 * 149.99965 * 3 2 1 29 29 H 1.08998 * 109.47274 * 29.99842 * 3 2 1 30 30 H 1.08998 * 109.46986 * 300.00012 * 4 3 2 31 31 H 1.08996 * 109.47100 * 59.99786 * 4 3 2 32 32 H 1.08996 * 109.46615 * 299.99565 * 5 4 3 33 33 H 1.09000 * 109.47086 * 59.99440 * 5 4 3 34 34 H 1.00900 * 111.00759 * 56.04263 * 6 5 4 35 35 H 1.08998 * 109.47258 * 299.99949 * 7 6 5 36 36 H 1.09011 * 109.46807 * 59.99923 * 7 6 5 37 37 H 0.97000 * 120.00196 * 0.02562 * 10 8 7 38 38 H 0.97001 * 119.99894 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.46891 * 63.48505 * 22 21 19 40 40 H 1.08998 * 109.47333 * 183.48730 * 22 21 19 41 41 H 1.09001 * 109.46829 * 303.48581 * 22 21 19 42 42 H 1.09004 * 117.49976 * 0.02562 * 23 21 19 43 43 H 1.09004 * 117.50114 * 145.02122 * 23 21 19 44 44 H 1.08995 * 117.49754 * 214.98040 * 24 21 19 45 45 H 1.08998 * 117.49884 * 0.02562 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4426 6 7 3.4622 3.4594 -2.8275 7 6 4.1965 4.7312 -2.8668 8 6 4.4285 5.1332 -4.3005 9 8 4.0219 4.4297 -5.2011 10 7 5.0880 6.2744 -4.5821 11 6 5.2987 6.6403 -5.8864 12 1 4.9366 6.0140 -6.6882 13 6 5.9781 7.8172 -6.1767 14 7 6.4182 8.5795 -5.2010 15 14 6.2658 8.3155 -7.9539 16 1 5.6755 7.2943 -8.8561 17 1 5.6249 9.6306 -8.2092 18 1 7.7250 8.4181 -8.2092 19 6 2.1388 -1.1672 0.0005 20 8 3.3496 -1.1684 -0.0702 21 6 1.3879 -2.4708 0.0890 22 6 0.5470 -2.8324 -1.1369 23 6 0.8521 -2.8857 1.4606 24 6 2.0516 -3.6178 0.8538 25 1 -0.3634 -0.0968 -1.0231 26 1 -0.3634 -0.8376 0.5955 27 1 -0.3634 0.9344 0.4277 28 1 3.1498 1.1385 0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.0415 0.9507 -1.9563 31 1 1.5000 1.8407 -1.9563 32 1 2.6292 3.7949 -0.9287 33 1 4.1704 2.9044 -0.9288 34 1 2.5976 3.5254 -3.3434 35 1 3.6144 5.5025 -2.3625 36 1 5.1560 4.6124 -2.3632 37 1 5.4136 6.8368 -3.8619 38 1 6.8928 9.4009 -5.4037 39 1 1.2007 -2.9700 -1.9982 40 1 0.0013 -3.7559 -0.9437 41 1 -0.1602 -2.0287 -1.3422 42 1 1.0422 -2.2155 2.2990 43 1 -0.0995 -3.4166 1.4897 44 1 1.8887 -4.6300 0.4838 45 1 3.0311 -3.4294 1.2933 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670104718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:21 Heat of formation + Delta-G solvation = -49.830485 kcal Electronic energy + Delta-G solvation = -23316.075572 eV Core-core repulsion = 19755.284021 eV Total energy + Delta-G solvation = -3560.791552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60645 -38.28841 -37.39856 -36.38379 -35.38946 -33.84849 -31.84409 -31.14143 -29.16933 -27.63233 -26.83755 -25.22532 -23.71474 -22.89526 -22.23290 -21.36891 -19.19582 -18.94438 -17.85103 -17.07443 -16.62579 -16.08095 -15.81074 -15.64691 -15.06822 -14.66116 -14.51587 -14.20141 -14.13559 -13.78019 -13.50767 -13.35753 -13.12497 -12.83619 -12.78199 -12.65633 -12.40547 -12.04353 -11.96049 -11.81957 -11.66158 -11.45870 -11.33232 -11.04115 -10.94701 -10.71781 -10.41592 -10.32248 -10.19955 -9.89063 -9.49429 -8.95484 -8.42142 -8.00693 -7.92630 -6.39205 -3.79805 2.31623 2.64648 3.18312 3.27999 3.28601 3.36264 3.94266 4.07415 4.14166 4.25690 4.37579 4.40918 4.56887 4.75682 4.84295 5.01665 5.11608 5.15402 5.17250 5.21447 5.24363 5.27410 5.28919 5.37575 5.41645 5.44801 5.47571 5.50895 5.69132 5.70082 5.75286 5.83187 6.02684 6.09745 6.13711 6.30421 6.36496 7.07765 7.28005 7.57995 7.71954 7.93629 8.09609 8.64432 9.20751 9.57450 10.09142 10.78714 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039535 B = 0.002017 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.071739 B =13876.518197 C =14037.101595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.117 3.883 4 C -0.131 4.131 5 C 0.063 3.937 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.565 5.565 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.549 3.451 20 O -0.529 6.529 21 C -0.159 4.159 22 C -0.114 4.114 23 C -0.162 4.162 24 C -0.145 4.145 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 -18.400 16.830 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C -0.006 4.006 4 C -0.170 4.170 5 C -0.067 4.067 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.202 5.202 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.181 4.181 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 C 0.336 3.664 20 O -0.404 6.404 21 C -0.163 4.163 22 C -0.171 4.171 23 C -0.199 4.199 24 C -0.182 4.182 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.679 -19.061 16.096 28.452 hybrid contribution -0.364 1.460 -0.165 1.513 sum -14.043 -17.601 15.931 27.583 Atomic orbital electron populations 1.21906 0.79391 1.03237 1.02042 1.47770 1.07104 1.05902 1.73683 1.21506 0.97696 0.83872 0.97478 1.21886 1.00708 0.98045 0.96377 1.21856 0.99548 0.94931 0.90337 1.60027 1.27346 1.30945 1.11835 1.21672 0.99417 0.90330 0.96764 1.19835 0.84320 0.83384 0.89787 1.90520 1.55006 1.53583 1.47599 1.41874 1.49632 1.19878 1.08787 1.19761 1.33478 1.05498 0.84019 0.87874 1.25272 0.96951 0.96082 0.99774 1.69624 1.38623 1.14287 1.31848 0.85791 0.77988 0.78430 0.82080 1.19220 1.20804 1.20744 1.19579 0.87134 0.84038 0.75646 1.90730 1.13976 1.87034 1.48707 1.21411 1.04201 0.94865 0.95787 1.21366 0.98746 1.01874 0.95114 1.23129 0.99111 1.03402 0.94286 1.23037 0.97807 0.95823 1.01561 0.92347 0.90791 0.90866 0.89777 0.90489 0.90385 0.91946 0.95628 0.90941 0.83302 0.93920 0.89574 0.77453 0.91955 0.91492 0.91421 0.91374 0.88508 0.87787 0.87831 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 9.16 59.84 0.55 0.99 16 2 N -0.61 -5.69 2.87 -181.57 -0.52 -6.21 16 3 C 0.12 1.15 5.42 -4.04 -0.02 1.13 16 4 C -0.13 -1.55 5.80 -26.73 -0.15 -1.71 16 5 C 0.06 0.83 5.69 -3.83 -0.02 0.81 16 6 N -0.67 -11.56 6.13 -115.06 -0.70 -12.27 16 7 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 8 C 0.44 10.82 7.82 -10.99 -0.09 10.74 16 9 O -0.58 -16.42 15.78 5.55 0.09 -16.34 16 10 N -0.56 -14.73 5.29 -10.96 -0.06 -14.79 16 11 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 12 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 13 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.96 13.05 55.50 0.72 -24.24 16 15 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.55 6.28 6.92 -10.99 -0.08 6.21 16 20 O -0.53 -8.35 16.39 5.55 0.09 -8.26 16 21 C -0.16 -1.30 1.39 -155.66 -0.22 -1.52 16 22 C -0.11 -0.74 9.50 37.16 0.35 -0.39 16 23 C -0.16 -0.94 8.88 -26.70 -0.24 -1.18 16 24 C -0.14 -1.08 9.79 -26.69 -0.26 -1.34 16 25 H 0.06 0.32 7.16 -51.93 -0.37 -0.05 16 26 H 0.07 0.33 6.06 -51.93 -0.31 0.02 16 27 H 0.07 0.32 7.83 -51.93 -0.41 -0.08 16 28 H 0.08 0.94 7.48 -51.93 -0.39 0.56 16 29 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.35 6.09 8.43 -39.29 -0.33 5.76 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.50 8.14 -51.92 -0.42 1.07 16 37 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 41 H 0.07 0.38 5.84 -51.93 -0.30 0.08 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -34.83 373.68 -7.64 -42.47 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -7.42 Total: 11.14 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.45 Total: 6.47 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.56 Total: -57.51 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.18 Total: -24.59 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.83 -7.64 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670104718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.360 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds